The Progress of Multi-Omics Technologies: Determining Function in Lactic Acid Bacteria Using a Systems Level Approach

Systems Biology and Multi-Omics Integration: Viewpoints from the Metabolomics Research Community

(2019) Farhana R. Pinu et al.   Metabolites

Multi-omics Analyses Reveal Synergistic Carbohydrate Metabolism in Streptococcus mutans-Candida albicans Mixed-Species Biofilms

(2019) K. Ellepola et al.   INFECTION AND IMMUNITY

Characterization and comparison of metaproteomes in traditional and commercial dajiang, a fermented soybean paste in northeast China

(2019) Mengxi Xie et al.   FOOD CHEMISTRY

Single-Cell Mass Spectrometry Approaches to Explore Cellular Heterogeneity

(2018) Linwen Zhang et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Clustering of Pan- and Core-genome of Lactobacillus provides Novel Evolutionary Insights for Differentiation

(2018) Raffael C. Inglin et al.   BMC GENOMICS

Metabolic and functional paths of lactic acid bacteria in plant foods: get out of the labyrinth

(2018) Pasquale Filannino et al.   CURRENT OPINION IN BIOTECHNOLOGY

Omics and multi-omics approaches to study the biosynthesis of secondary metabolites in microorganisms

(2018) Emilia Palazzotto et al.   CURRENT OPINION IN MICROBIOLOGY

Proteomic analysis of Lactobacillus pentosus for the identification of potential markers involved in acid resistance and their influence on other probiotic features

(2018) Beatriz Pérez Montoro et al.   FOOD MICROBIOLOGY

Metatranscriptome of the Oral Microbiome in Health and Disease

(2018) J. Solbiati et al.   JOURNAL OF DENTAL RESEARCH

Challenges and emergent solutions for LC-MS/MS based untargeted metabolomics in diseases

(2018) Liang Cui et al.   MASS SPECTROMETRY REVIEWS

Comprehensive overview and recent advances in proteomics MS based methods for food allergens analysis

(2018) Linda Monaci et al.   TRAC-TRENDS IN ANALYTICAL CHEMISTRY

The Third Revolution in Sequencing Technology

(2018) Erwin L. van Dijk et al.   TRENDS IN GENETICS

Long-Read Sequencing Revealed an Extensive Transcript Complexity in Herpesviruses

(2018) Dóra Tombácz et al.   Frontiers in Genetics

Stability of the human faecal microbiome in a cohort of adult men

(2018) Raaj S. Mehta et al.   Nature Microbiology

The Development of an Effective Bacterial Single-Cell Lysis Method Suitable for Whole Genome Amplification in Microfluidic Platforms

(2018) Yuguang Liu et al.   Micromachines

An integrated metagenomic/metaproteomic investigation of microbiota in dajiang-meju, a traditional fermented soybean product in Northeast China

(2018) Mengxi Xie et al.   FOOD RESEARCH INTERNATIONAL

Functional analysis of the role of CcpA in Lactobacillus plantarum grown on fructooligosaccharides or glucose: a transcriptomic perspective

(2018) Yanqing Lu et al.   Microbial Cell Factories

Multi-omics and potential applications in wine production

(2018) Kimmo Sirén et al.   CURRENT OPINION IN BIOTECHNOLOGY

Systems biology of robustness and flexibility: Lactobacillus buchneri —A show case

(2017) Stefan Heinl et al.   JOURNAL OF BIOTECHNOLOGY

316 Universal transcriptomic analysis of host-microbiome interactions in psoriasis

(2017) T. Furnholm et al.   JOURNAL OF INVESTIGATIVE DERMATOLOGY

Genomics, transcriptomics and proteomics: enabling insights into social evolution and disease challenges for managed and wild bees

(2017) Judith Trapp et al.   MOLECULAR ECOLOGY

Single-cell genome sequencing at ultra-high-throughput with microfluidic droplet barcoding

(2017) Freeman Lan et al.   NATURE BIOTECHNOLOGY

PECAN: library-free peptide detection for data-independent acquisition tandem mass spectrometry data

(2017) Ying S Ting et al.   NATURE METHODS

Tumour heterogeneity and resistance to cancer therapies

(2017) Ibiayi Dagogo-Jack et al.   Nature Reviews Clinical Oncology

PRISM 3: expanded prediction of natural product chemical structures from microbial genomes

(2017) Michael A. Skinnider et al.   NUCLEIC ACIDS RESEARCH

antiSMASH 4.0—improvements in chemistry prediction and gene cluster boundary identification

(2017) Kai Blin et al.   NUCLEIC ACIDS RESEARCH

A subcellular map of the human proteome

(2017) Peter J. Thul et al.   SCIENCE

Unprecedented large inverted repeats at the replication terminus of circular bacterial chromosomes suggest a novel mode of chromosome rescue

(2017) Hela El Kafsi et al.   Scientific Reports

Commensal-to-pathogen transition: One-single transposon insertion results in two pathoadaptive traits in Escherichia coli -macrophage interaction

(2017) João T. Proença et al.   Scientific Reports

mixOmics: An R package for ‘omics feature selection and multiple data integration

(2017) Florian Rohart et al.   PLoS Computational Biology

A Perspective Study of Koumiss Microbiome by Metagenomics Analysis Based on Single-Cell Amplification Technique

(2017) Guoqiang Yao et al.   Frontiers in Microbiology

Transcriptome Profiling Using Single-Molecule Direct RNA Sequencing Approach for In-depth Understanding of Genes in Secondary Metabolism Pathways of Camellia sinensis

(2017) Qingshan Xu et al.   Frontiers in Plant Science

More Is Better: Recent Progress in Multi-Omics Data Integration Methods

(2017) Sijia Huang et al.   Frontiers in Genetics

Current perspectives in food-based studies exploiting multi-omics approaches

(2017) Ilario Ferrocino et al.   Current Opinion in Food Science

Multicolor Fluorescence Detection-Based Microfluidic Device for Single-Cell Metabolomics: Simultaneous Quantitation of Multiple Small Molecules in Primary Liver Cells

(2016) Qingling Li et al.   ANALYTICAL CHEMISTRY

Mass Spectrometry Applied to Bottom-Up Proteomics: Entering the High-Throughput Era for Hypothesis Testing

(2016) Ludovic C. Gillet et al.   Annual Review of Analytical Chemistry

Discovery of pentangular polyphenols hexaricins A–C from marine Streptosporangium sp. CGMCC 4.7309 by genome mining

(2016) Jun Tian et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Deciphering bifidobacterial-mediated metabolic interactions and their impact on gut microbiota by a multi-omics approach

(2016) Francesca Turroni et al.   ISME Journal

Polyketide and nonribosomal peptide retro-biosynthesis and global gene cluster matching

(2016) Chris A Dejong et al.   Nature Chemical Biology

Single-cell genome sequencing: current state of the science

(2016) Charles Gawad et al.   NATURE REVIEWS GENETICS

Functional proteomics within the genusLactobacillus

(2016) Maria De Angelis et al.   PROTEOMICS

The impact of next-generation sequencing on the DNA methylation–based translational cancer research

(2016) Javier Soto et al.   Translational Research

A Multi-Omics Approach to Evaluate the Quality of Milk Whey Used in Ricotta Cheese Production

(2016) Eleonora Sattin et al.   Frontiers in Microbiology

Using “Omics” and Integrated Multi-Omics Approaches to Guide Probiotic Selection to Mitigate Chytridiomycosis and Other Emerging Infectious Diseases

(2016) Eria A. Rebollar et al.   Frontiers in Microbiology

Heavy Metal Tolerance in Plants: Role of Transcriptomics, Proteomics, Metabolomics, and Ionomics

(2016) Samiksha Singh et al.   Frontiers in Plant Science

Rumen metagenome and metatranscriptome analyses of low methane yield sheep reveals a Sharpea-enriched microbiome characterised by lactic acid formation and utilisation

(2016) Janine Kamke et al.   Microbiome

Oxford Nanopore MinION Sequencing and Genome Assembly

(2016) Hengyun Lu et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

Metatranscriptomics reveals temperature-driven functional changes in microbiome impacting cheese maturation rate

(2016) Francesca De Filippis et al.   Scientific Reports

Genome-Directed Lead Discovery: Biosynthesis, Structure Elucidation, and Biological Evaluation of Two Families of Polyene Macrolactams against Trypanosoma brucei

(2015) Christopher J. Schulze et al.   ACS Chemical Biology

Solid-Phase Extraction and Nanoflow Liquid Chromatography-Nanoelectrospray Ionization Mass Spectrometry for Improved Global Urine Metabolomics

(2015) Andrew J. Chetwynd et al.   ANALYTICAL CHEMISTRY

Genome Sequence and Transcriptome Analysis of Meat-Spoilage-Associated Lactic Acid Bacterium Lactococcus piscium MKFS47

(2015) Margarita Andreevskaya et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

CASSIS and SMIPS: promoter-based prediction of secondary metabolite gene clusters in eukaryotic genomes

(2015) Thomas Wolf et al.   BIOINFORMATICS

Droplet Barcoding for Single-Cell Transcriptomics Applied to Embryonic Stem Cells

(2015) Allon M. Klein et al.   CELL

Single Cell RNA-Sequencing of Pluripotent States Unlocks Modular Transcriptional Variation

(2015) Aleksandra A. Kolodziejczyk et al.   Cell Stem Cell

Genome level analysis of bacteriocins of lactic acid bacteria

(2015) Neetigyata Pratap Singh et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

Technologies for Single-Cell Isolation

(2015) Andre Gross et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Multi -omics and metabolic modelling pipelines: Challenges and tools for systems microbiology

(2015) Marco Fondi et al.   MICROBIOLOGICAL RESEARCH

Advances and Applications of Single-Cell Sequencing Technologies

(2015) Yong Wang et al.   MOLECULAR CELL

G&T-seq: parallel sequencing of single-cell genomes and transcriptomes

(2015) Iain C Macaulay et al.   NATURE METHODS

Direct metabolomics for plant cells by live single-cell mass spectrometry

(2015) Takashi Fujii et al.   Nature Protocols

Babelomics 5.0: functional interpretation for new generations of genomic data

(2015) Roberto Alonso et al.   NUCLEIC ACIDS RESEARCH

antiSMASH 3.0—a comprehensive resource for the genome mining of biosynthetic gene clusters

(2015) Tilmann Weber et al.   NUCLEIC ACIDS RESEARCH

A Genomic, Transcriptomic and Proteomic Look at the GE2270 Producer Planobispora rosea, an Uncommon Actinomycete

(2015) Arianna Tocchetti et al.   PLoS One

Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq

(2015) A. Zeisel et al.   SCIENCE

Mechanism of cisplatin proximal tubule toxicity revealed by integrating transcriptomics, proteomics, metabolomics and biokinetics

(2015) Anja Wilmes et al.   TOXICOLOGY IN VITRO

Where Next for Microbiome Research?

(2015) Matthew K. Waldor et al.   PLOS BIOLOGY

PacBio Sequencing and Its Applications

(2015) Anthony Rhoads et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

Data integration in the era of omics: current and future challenges

(2014) David Gomez-Cabrero et al.   BMC Systems Biology

Diet and the Intestinal Microbiome: Associations, Functions, and Implications for Health and Disease

(2014) Lindsey G. Albenberg et al.   GASTROENTEROLOGY

Novel bacteriocins from lactic acid bacteria (LAB): various structures and applications

(2014) Rodney H Perez et al.   Microbial Cell Factories

A draft map of the human proteome

(2014) Min-Sik Kim et al.   NATURE

Microfluidic high-throughput culturing of single cells for selection based on extracellular metabolite production or consumption

(2014) Benjamin L Wang et al.   NATURE BIOTECHNOLOGY

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

Sequencing depth and coverage: key considerations in genomic analyses

(2014) David Sims et al.   NATURE REVIEWS GENETICS

Power analysis and sample size estimation for RNA-Seq differential expression

(2014) Travers Ching et al.   RNA

Single-cell RNA-seq highlights intratumoral heterogeneity in primary glioblastoma

(2014) A. P. Patel et al.   SCIENCE

Cancer Cell Profiling by Barcoding Allows Multiplexed Protein Analysis in Fine-Needle Aspirates

(2014) A. V. Ullal et al.   Science Translational Medicine

Theoretical and practical interest in UHPLC technology for 2D-LC

(2014) Morgan Sarrut et al.   TRAC-TRENDS IN ANALYTICAL CHEMISTRY

Large-Scale Genomic Analysis Suggests a Neutral Punctuated Dynamics of Transposable Elements in Bacterial Genomes

(2014) Jaime Iranzo et al.   PLoS Computational Biology

The Past, Present, and Future of Human Centromere Genomics

(2014) Megan Aldrup-MacDonald et al.   Genes

Comparative Genomic and Functional Analysis of Lactobacillus casei and Lactobacillus rhamnosus Strains Marketed as Probiotics

(2013) François P. Douillard et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Antimicrobial activity, antibiotic susceptibility and virulence factors of Lactic Acid Bacteria of aquatic origin intended for use as probiotics in aquaculture

(2013) Estefanía Muñoz-Atienza et al.   BMC MICROBIOLOGY

Application of ’omics technologies to biomarker discovery in inflammatory lung diseases

(2013) Craig E. Wheelock et al.   EUROPEAN RESPIRATORY JOURNAL

Metatranscriptomic analysis of lactic acid bacterial gene expression during kimchi fermentation

(2013) Ji Young Jung et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Strain-specific proteogenomics accelerates the discovery of natural products via their biosynthetic pathways

(2013) Jessica C. Albright et al.   JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY

The Metabolic Regulation of Sporulation and Parasporal Crystal Formation inBacillus thuringiensisRevealed by Transcriptomics and Proteomics

(2013) Jieping Wang et al.   MOLECULAR & CELLULAR PROTEOMICS

Insights into the phylogeny and coding potential of microbial dark matter

(2013) Christian Rinke et al.   NATURE

Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells

(2013) Alex K. Shalek et al.   NATURE

Transcriptome and genome sequencing uncovers functional variation in humans

(2013) Tuuli Lappalainen et al.   NATURE

Using population admixture to help complete maps of the human genome

(2013) Giulio Genovese et al.   NATURE GENETICS

Single-cell sequencing-based technologies will revolutionize whole-organism science

(2013) Ehud Shapiro et al.   NATURE REVIEWS GENETICS

Computational solutions for omics data

(2013) Bonnie Berger et al.   NATURE REVIEWS GENETICS

Single-cell RNA-Seq profiling of human preimplantation embryos and embryonic stem cells

(2013) Liying Yan et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

The Transcriptional and Gene Regulatory Network of Lactococcus lactis MG1363 during Growth in Milk

(2013) Anne de Jong et al.   PLoS One

Gut–brain axis: how the microbiome influences anxiety and depression

(2013) Jane A. Foster et al.   TRENDS IN NEUROSCIENCES

ATHENA: Identifying interactions between different levels of genomic data associated with cancer clinical outcomes using grammatical evolution neural network

(2013) Dokyoon Kim et al.   BioData Mining

Comparative meta-RNA-seq of the vaginal microbiota and differential expression by Lactobacillus iners in health and dysbiosis

(2013) Jean M Macklaim et al.   Microbiome

Antibacterial metabolites of lactic acid bacteria: Their diversity and properties

(2012) L. G. Stoyanova et al.   APPLIED BIOCHEMISTRY AND MICROBIOLOGY

Microfluidic single cell analysis: from promise to practice

(2012) Véronique Lecault et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Metabolomics as a tool for the comprehensive understanding of fermented and functional foods with lactic acid bacteria

(2012) Fernanda Mozzi et al.   FOOD RESEARCH INTERNATIONAL

A Bayesian Integrative Genomic Model for Pathway Analysis of Complex Traits

(2012) Brooke L. Fridley et al.   GENETIC EPIDEMIOLOGY

Single-cell sequencing provides clues about the host interactions of segmented filamentous bacteria (SFB)

(2012) Sünje J. Pamp et al.   GENOME RESEARCH

Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill

(2012) Olivia U Mason et al.   ISME Journal

Transcriptional and Metabolomic Consequences of luxS Inactivation Reveal a Metabolic Rather than Quorum-Sensing Role for LuxS in Lactobacillus reuteri 100-23

(2012) C. M. Wilson et al.   JOURNAL OF BACTERIOLOGY

Photocleavable DNA Barcode–Antibody Conjugates Allow Sensitive and Multiplexed Protein Analysis in Single Cells

(2012) Sarit S. Agasti et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Genome and Transcriptome Sequencing in Prospective Metastatic Triple-Negative Breast Cancer Uncovers Therapeutic Vulnerabilities

(2012) D. W. Craig et al.   MOLECULAR CANCER THERAPEUTICS

Structure, function and diversity of the healthy human microbiome

(2012)   NATURE

The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups

(2012) Christina Curtis et al.   NATURE

Insights into the regulation of protein abundance from proteomic and transcriptomic analyses

(2012) Christine Vogel et al.   NATURE REVIEWS GENETICS

RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics

(2012) M. Lohse et al.   NUCLEIC ACIDS RESEARCH

Characterization of Pro-Inflammatory Flagellin Proteins Produced by Lactobacillus ruminis and Related Motile Lactobacilli

(2012) B. Anne Neville et al.   PLoS One

Lactic acid bacteria contribution to gut microbiota complexity: lights and shadows

(2012) Enrica Pessione   Frontiers in Cellular and Infection Microbiology

Immune Modulation Capability of Exopolysaccharides Synthesised by Lactic Acid Bacteria and Bifidobacteria

(2012) Claudio Hidalgo-Cantabrana et al.   Probiotics and Antimicrobial Proteins

A combined physiological and proteomic approach to reveal lactic-acid-induced alterations in Lactobacillus casei Zhang and its mutant with enhanced lactic acid tolerance

(2011) Chongde Wu et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Sequence-Specific Ultrasonic Cleavage of DNA

(2011) Sergei L. Grokhovsky et al.   BIOPHYSICAL JOURNAL

Comparative proteomic analysis of Lactobacillus plantarum for the identification of key proteins in bile tolerance

(2011) Erwann Hamon et al.   BMC MICROBIOLOGY

Characterization of complex chromosomal rearrangements by targeted capture and next-generation sequencing

(2011) N. L. M. Sobreira et al.   GENOME RESEARCH

A transforming KIF5B and RET gene fusion in lung adenocarcinoma revealed from whole-genome and transcriptome sequencing

(2011) Y. S. Ju et al.   GENOME RESEARCH

Metabonomic Understanding of Probiotic Effects in Humans With Irritable Bowel Syndrome

(2011) Young-Shick Hong et al.   JOURNAL OF CLINICAL GASTROENTEROLOGY

Multi-omics approach to study the growth efficiency and amino acid metabolism in Lactococcus lactis at various specific growth rates

(2011) Petri-Jaan Lahtvee et al.   Microbial Cell Factories

Investigation of the adaptation of Lactococcus lactis to isoleucine starvation integrating dynamic transcriptome and proteome information

(2011) Clémentine Dressaire et al.   Microbial Cell Factories

Ultra High Resolution Linear Ion Trap Orbitrap Mass Spectrometer (Orbitrap Elite) Facilitates Top Down LC MS/MS and Versatile Peptide Fragmentation Modes

(2011) Annette Michalski et al.   MOLECULAR & CELLULAR PROTEOMICS

Exploring Metabolic Pathway Reconstruction and Genome-Wide Expression Profiling in Lactobacillus reuteri to Define Functional Probiotic Features

(2011) Delphine M. Saulnier et al.   PLoS One

Gut Microbiome Metagenomics Analysis Suggests a Functional Model for the Development of Autoimmunity for Type 1 Diabetes

(2011) Christopher T. Brown et al.   PLoS One

Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries

(2011) Daniel Aird et al.   GENOME BIOLOGY

Proteomic Analyses To Reveal the Protective Role of Glutathione in Resistance of Lactococcus lactis to Osmotic Stress

(2010) Y. Zhang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Mixed-Culture Transcriptome Analysis Reveals the Molecular Basis of Mixed-Culture Growth in Streptococcus thermophilus and Lactobacillus bulgaricus

(2010) S. Sieuwerts et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

LAB-Secretome: a genome-scale comparative analysis of the predicted extracellular and surface-associated proteins of Lactic Acid Bacteria

(2010) Miaomiao Zhou et al.   BMC GENOMICS

A Microfluidic Platform for Systems Pathology: Multiparameter Single-Cell Signaling Measurements of Clinical Brain Tumor Specimens

(2010) J. Sun et al.   CANCER RESEARCH

An Integrated Approach to Uncover Drivers of Cancer

(2010) Uri David Akavia et al.   CELL

Lactic acid bacteria community dynamics and metabolite production of rye sourdough fermentations share characteristics of wheat and spelt sourdough fermentations

(2010) Stefan Weckx et al.   FOOD MICROBIOLOGY

Integrated metatranscriptomic and metagenomic analyses of stratified microbial assemblages in the open ocean

(2010) Yanmei Shi et al.   ISME Journal

Proteomics of the bacterial cross-talk by quorum sensing

(2010) Raffaella Di Cagno et al.   Journal of Proteomics

Proteomics and Transcriptomics Characterization of Bile Stress Response in ProbioticLactobacillus rhamnosusGG

(2010) Kerttu Koskenniemi et al.   MOLECULAR & CELLULAR PROTEOMICS

Proteomics as a tool for studying energy metabolism in lactic acid bacteria

(2010) Alessandro Pessione et al.   Molecular BioSystems

The challenges of integrating multi-omic data sets

(2010) Bernhard Palsson et al.   Nature Chemical Biology

Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling

(2010) Ignacio Medina et al.   NUCLEIC ACIDS RESEARCH

An integrated proteomics and transcriptomics reference data set provides new insights into the Bradyrhizobium japonicum bacteroid metabolism in soybean root nodules

(2010) Nathanaël Delmotte et al.   PROTEOMICS

Comparative genomics of Lactobacillus

(2010) Ravi Kant et al.   Microbial Biotechnology

Transfer of Antibiotic Resistance Marker Genes between Lactic Acid Bacteria in Model Rumen and Plant Environments

(2009) N. Toomey et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Strategies for the Discovery of New Natural Products by Genome Mining

(2009) Malek Zerikly et al.   CHEMBIOCHEM

Assessing the impact of transcriptomics, proteomics and metabolomics on fungal phytopathology

(2009) KAR-CHUN TAN et al.   MOLECULAR PLANT PATHOLOGY

mRNA-Seq whole-transcriptome analysis of a single cell

(2009) Fuchou Tang et al.   NATURE METHODS

Comparative genomic analysis of Lactobacillus rhamnosus GG reveals pili containing a human- mucus binding protein

(2009) M. Kankainen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evaluation of the Potential Excess of Statistically Significant Findings in Published Genetic Association Studies: Application to Alzheimer's Disease

(2008) Fotini K. Kavvoura et al.   AMERICAN JOURNAL OF EPIDEMIOLOGY

Postgenomic Analysis of Streptococcus thermophilus Cocultivated in Milk with Lactobacillus delbrueckii subsp. bulgaricus: Involvement of Nitrogen, Purine, and Iron Metabolism

(2008) L. Herve-Jimenez et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Correlation of mRNA and protein levels: Cell type-specific gene expression of cluster designation antigens in the prostate

(2008) Laura E Pascal et al.   BMC GENOMICS

Shotgun metaproteomics of the human distal gut microbiota

(2008) Nathan C Verberkmoes et al.   ISME Journal

Dynamics of Genome Rearrangement in Bacterial Populations

(2008) Aaron E. Darling et al.   PLoS Genetics