Metatranscriptome of the Oral Microbiome in Health and Disease

Potassium is a key signal in host-microbiome dysbiosis in periodontitis

(2017) Susan Yost et al.   PLoS Pathogens

Genomic characterization and assessment of the virulence and antibiotic resistance of the novel species Paenibacillus sp. strain VT-400, a potentially pathogenic bacterium in the oral cavity of patients with hematological malignancies

(2016) George Tetz et al.   Gut Pathogens

Small RNA Transcriptome of the Oral Microbiome during Periodontitis Progression

(2015) Ana E. Duran-Pinedo et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

metaModules identifies key functional subnetworks in microbiome-related disease

(2015) Ali May et al.   BIOINFORMATICS

Solving the etiology of dental caries

(2015) Aurea Simón-Soro et al.   TRENDS IN MICROBIOLOGY

Metagenomic sequencing reveals altered metabolic pathways in the oral microbiota of sailors during a long sea voyage

(2015) Weiwei Zheng et al.   Scientific Reports

Functional signatures of oral dysbiosis during periodontitis progression revealed by microbial metatranscriptome analysis

(2015) Susan Yost et al.   Genome Medicine

Functional biomarkers for chronic periodontitis and insights into the roles of Prevotella nigrescens and Fusobacterium nucleatum; a metatranscriptome analysis

(2015) Szymon P Szafrański et al.   npj Biofilms and Microbiomes

Microbiota diversity and gene expression dynamics in human oral biofilms

(2014) Alfonso Benítez-Páez et al.   BMC GENOMICS

The Integrative Human Microbiome Project: Dynamic Analysis of Microbiome-Host Omics Profiles during Periods of Human Health and Disease

(2014)   Cell Host & Microbe

Cytokines and chemokines are differentially expressed in patients with periodontitis: Possible role for TGF-β1 as a marker for disease progression

(2014) Hazem Khalaf et al.   CYTOKINE

Community-wide transcriptome of the oral microbiome in subjects with and without periodontitis

(2014) Ana E Duran-Pinedo et al.   ISME Journal

The Prevalence of Species and Strains in the Human Microbiome: A Resource for Experimental Efforts

(2014) Laurens Kraal et al.   PLoS One

Relating the metatranscriptome and metagenome of the human gut

(2014) E. A. Franzosa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Power analysis and sample size estimation for RNA-Seq differential expression

(2014) Travers Ching et al.   RNA

Metatranscriptomics of the Human Oral Microbiome during Health and Disease

(2014) P. Jorth et al.   mBio

Functional expression of dental plaque microbiota

(2014) Scott N. Peterson et al.   Frontiers in Cellular and Infection Microbiology

Advancements toward a systems level understanding of the human oral microbiome

(2014) Jeffrey S. McLean   Frontiers in Cellular and Infection Microbiology

Metatranscriptomics reveals overall active bacterial composition in caries lesions

(2014) Aurea Simón-Soro et al.   Journal of Oral Microbiology

RNA-seq differential expression studies: more sequence or more replication?

(2013) Yuwen Liu et al.   BIOINFORMATICS

Bacterial markers vs. clinical markers to predict progression of chronic periodontitis: a 2-yr prospective observational study

(2013) Georgios Charalampakis et al.   EUROPEAN JOURNAL OF ORAL SCIENCES

Calculating Sample Size Estimates for RNA Sequencing Data

(2013) Steven N. Hart et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

The Dental Plaque Microbiome in Health and Disease

(2013) Scott N. Peterson et al.   PLoS One

The keystone-pathogen hypothesis

(2012) George Hajishengallis et al.   NATURE REVIEWS MICROBIOLOGY

The human microbiome: ecosystem resilience and health

(2012) David A Relman   NUTRITION REVIEWS

Association between genetic risk score and periodontitis onset and progression: A pilot study

(2011) M. Ricci et al.   ARCHIVES OF ORAL BIOLOGY

Microbiota of Severe Early Childhood Caries before and after Therapy

(2011) A.C.R. Tanner et al.   JOURNAL OF DENTAL RESEARCH

Linear amplification for deep sequencing

(2011) Wieteke A M Hoeijmakers et al.   Nature Protocols

Metatranscriptome Analysis of the Human Fecal Microbiota Reveals Subject-Specific Expression Profiles, with Genes Encoding Proteins Involved in Carbohydrate Metabolism Being Dominantly Expressed

(2010) C. C. G. M. Booijink et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microbial shift and periodontitis

(2010) Alex B. Berezow et al.   PERIODONTOLOGY 2000

The Oral Microbial Consortium's Interaction with the Periodontal Innate Defense System

(2009) Richard P. Darveau   DNA AND CELL BIOLOGY

Comparisons of Subgingival Microbial Profiles of Refractory Periodontitis, Severe Periodontitis, and Periodontal Health Using the Human Oral Microbe Identification Microarray

(2009) Ana Paula V. Colombo et al.   JOURNAL OF PERIODONTOLOGY

Progression of chronic periodontitis can be predicted by the levels ofPorphyromonas gingivalisandTreponema denticolain subgingival plaque

(2009) S. J. Byrne et al.   Oral microbiology and immunology

Streptococcal Antagonism in Oral Biofilms: Streptococcus sanguinis and Streptococcus gordonii Interference with Streptococcus mutans

(2008) J. Kreth et al.   JOURNAL OF BACTERIOLOGY

Disease Progression in Periodontally Healthy and Maintenance Subjects

(2008) R.P. Teles et al.   JOURNAL OF PERIODONTOLOGY