Using “Omics” and Integrated Multi-Omics Approaches to Guide Probiotic Selection to Mitigate Chytridiomycosis and Other Emerging Infectious Diseases

Skin bacterial diversity of Panamanian frogs is associated with host susceptibility and presence of Batrachochytrium dendrobatidis

(2016) Eria A Rebollar et al.   ISME Journal

Most of the Dominant Members of Amphibian Skin Bacterial Communities Can Be Readily Cultured

(2015) Jenifer B. Walke et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Amphibian Symbiotic Bacteria Do Not Show a Universal Ability To Inhibit Growth of the Global Panzootic Lineage of Batrachochytrium dendrobatidis

(2015) Rachael E. Antwis et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Skin bacteria provide early protection for newly metamorphosed southern leopard frogs ( Rana sphenocephala ) against the frog-killing fungus, Batrachochytrium dendrobatidis

(2015) Whitney M. Holden et al.   BIOLOGICAL CONSERVATION

Antifungal isolates database of amphibian skin-associated bacteria and function against emerging fungal pathogens

(2015) Douglas C. Woodhams et al.   ECOLOGY

Resilience vs. historical contingency in microbial responses to environmental change

(2015) Christine V. Hawkes et al.   ECOLOGY LETTERS

Probiotics and prebiotics associated with aquaculture: A review

(2015) Najeeb Akhter et al.   FISH & SHELLFISH IMMUNOLOGY

Context-dependent conservation responses to emerging wildlife diseases

(2015) Kate E Langwig et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT

Inhibitory bacteria reduce fungi on early life stages of endangered Colorado boreal toads (Anaxyrus boreas)

(2015) Jordan G Kueneman et al.   ISME Journal

Personalized microbial network inference via co-regularized spectral clustering

(2015) Sultan Imangaliyev et al.   METHODS

Effect of Probiotics/Prebiotics on Cattle Health and Productivity

(2015) Yutaka Uyeno et al.   MICROBES AND ENVIRONMENTS

Phylogenetic distribution of symbiotic bacteria from Panamanian amphibians that inhibit growth of the lethal fungal pathogenBatrachochytrium dendrobatidis

(2015) Matthew H. Becker et al.   MOLECULAR ECOLOGY

Counteraction of antibiotic production and degradation stabilizes microbial communities

(2015) Eric D. Kelsic et al.   NATURE

Systematic discovery of probiotics

(2015) Samuel C Forster et al.   NATURE BIOTECHNOLOGY

Twenty years of bacterial genome sequencing

(2015) Nicholas J. Loman et al.   NATURE REVIEWS MICROBIOLOGY

Sequencing and beyond: integrating molecular 'omics' for microbial community profiling

(2015) Eric A. Franzosa et al.   NATURE REVIEWS MICROBIOLOGY

Molecular cartography of the human skin surface in 3D

(2015) Amina Bouslimani et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Composition of symbiotic bacteria predicts survival in Panamanian golden frogs infected with a lethal fungus

(2015) M. H. Becker et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Susceptibility of amphibians to chytridiomycosis is associated with MHC class II conformation

(2015) A. Bataille et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Averting a North American biodiversity crisis

(2015) T. A. Yap et al.   SCIENCE

Co-infection alters population dynamics of infectious disease

(2015) Hanna Susi et al.   Nature Communications

The bacterial communities associated with fecal types and body weight of rex rabbits

(2015) Bo Zeng et al.   Scientific Reports

Future challenges and perspectives for applying microbial biotechnology in sustainable agriculture based on a better understanding of plant-microbiome interactions

(2015) J. M Barea   Journal of Soil Science and Plant Nutrition

Explaining Diversity in Metagenomic Datasets by Phylogenetic-Based Feature Weighting

(2015) Davide Albanese et al.   PLoS Computational Biology

Computational prediction of molecular pathogen-host interactions based on dual transcriptome data

(2015) Sylvie Schulze et al.   Frontiers in Microbiology

Discovering probiotic microorganisms: in vitro, in vivo, genetic and omics approaches

(2015) Konstantinos Papadimitriou et al.   Frontiers in Microbiology

Microbiota and Mucosal Immunity in Amphibians

(2015) Bruno M. Colombo et al.   Frontiers in Immunology

Bacteriophage and their potential roles in the human oral cavity

(2015) Anna Edlund et al.   Journal of Oral Microbiology

The microbiome of uncontacted Amerindians

(2015) J. C. Clemente et al.   Science Advances

A de novo Assembly of the Common Frog (Rana temporaria) Transcriptome and Comparison of Transcription Following Exposure to Ranavirus and Batrachochytrium dendrobatidis

(2015) Stephen J. Price et al.   PLoS One

Bacteria Isolated from Bats Inhibit the Growth of Pseudogymnoascus destructans, the Causative Agent of White-Nose Syndrome

(2015) Joseph R. Hoyt et al.   PLoS One

Widespread presence of the pathogenic fungus Batrachochytrium dendrobatidis in wild amphibian communities in Madagascar

(2015) Molly C. Bletz et al.   Scientific Reports

Treatment of urodelans based on temperature dependent infection dynamics of Batrachochytrium salamandrivorans

(2015) M. Blooi et al.   Scientific Reports

Nonlethal amphibian skin swabbing of cutaneous natural products for HPLC fingerprinting

(2014) Thomas P. Umile et al.   Analytical Methods

A multivariate approach to the integration of multi-omics datasets

(2014) Chen Meng et al.   BMC BIOINFORMATICS

Coral-zooxanthellae meta-transcriptomics reveals integrated response to pollutant stress

(2014) Kurt A Gust et al.   BMC GENOMICS

Mapping the Inner Workings of the Microbiome: Genomic- and Metagenomic-Based Study of Metabolism and Metabolic Interactions in the Human Microbiome

(2014) Ohad Manor et al.   Cell Metabolism

Collapse of Amphibian Communities Due to an Introduced Ranavirus

(2014) Stephen J. Price et al.   CURRENT BIOLOGY

Metatranscriptomic analysis of ectomycorrhizal roots reveals genes associated withPiloderma-Pinussymbiosis: improved methodologies for assessing gene expressionin situ

(2014) H.-L. Liao et al.   ENVIRONMENTAL MICROBIOLOGY

Skin sloughing rate increases with chytrid fungus infection load in a susceptible amphibian

(2014) Michel E.B. Ohmer et al.   FUNCTIONAL ECOLOGY

Conservation and divergence in the frog immunome: pyrosequencing and de novo assembly of immune tissue transcriptomes

(2014) Anna E. Savage et al.   GENE

More than Skin Deep: Functional Genomic Basis for Resistance to Amphibian Chytridiomycosis

(2014) Amy R. Ellison et al.   Genome Biology and Evolution

Amphibian skin may select for rare environmental microbes

(2014) Jenifer B Walke et al.   ISME Journal

Bacteria–bacteria interactions within the microbiota of the ancestral metazoan Hydra contribute to fungal resistance

(2014) Sebastian Fraune et al.   ISME Journal

Regulation of the Rana sylvatica brevinin-1SY antimicrobial peptide during development and in dorsal and ventral skin in response to freezing, anoxia and dehydration

(2014) B. A. Katzenback et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Biofertilizers function as key player in sustainable agriculture by improving soil fertility, plant tolerance and crop productivity

(2014) Deepak Bhardwaj et al.   Microbial Cell Factories

Major Histocompatibility Complex class IIb polymorphism influences gut microbiota composition and diversity

(2014) Daniel I. Bolnick et al.   MOLECULAR ECOLOGY

Amphibians acquire resistance to live and dead fungus overcoming fungal immunosuppression

(2014) Taegan A. McMahon et al.   NATURE

Precision microbiome reconstitution restores bile acid mediated resistance to Clostridium difficile

(2014) Charlie G. Buffie et al.   NATURE

Functional Soil Microbiome: Belowground Solutions to an Aboveground Problem

(2014) V. Lakshmanan et al.   PLANT PHYSIOLOGY

Stability of Microbiota Facilitated by Host Immune Regulation: Informing Probiotic Strategies to Manage Amphibian Disease

(2014) Denise Küng et al.   PLoS One

Interacting Symbionts and Immunity in the Amphibian Skin Mucosome Predict Disease Risk and Probiotic Effectiveness

(2014) Douglas C. Woodhams et al.   PLoS One

Bioinformatic Approaches Reveal Metagenomic Characterization of Soil Microbial Community

(2014) Zhuofei Xu et al.   PLoS One

Impact of Plant Cover on Fitness and Behavioural Traits of Captive Red-Eyed Tree Frogs (Agalychnis callidryas)

(2014) Christopher J. Michaels et al.   PLoS One

Cool Temperatures Reduce Antifungal Activity of Symbiotic Bacteria of Threatened Amphibians – Implications for Disease Management and Patterns of Decline

(2014) Joshua H. Daskin et al.   PLoS One

Sea star wasting

(2014) M. Schrope   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The pathogenBatrachochytrium dendrobatidisdisturbs the frog skin microbiome during a natural epidemic and experimental infection

(2014) Andrea J. Jani et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Recent introduction of a chytrid fungus endangers Western Palearctic salamanders

(2014) A. Martel et al.   SCIENCE

Metatranscriptomics of the Human Oral Microbiome during Health and Disease

(2014) P. Jorth et al.   mBio

Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible

(2014) Paul J. McMurdie et al.   PLoS Computational Biology

Interactions between amphibians' symbiotic bacteria cause the production of emergent anti-fungal metabolites

(2014) Andrew H. Loudon et al.   Frontiers in Microbiology

Communities of microbial eukaryotes in the mammalian gut within the context of environmental eukaryotic diversity

(2014) Laura Wegener Parfrey et al.   Frontiers in Microbiology

Therapeutic Use of Prebiotics, Probiotics, and Postbiotics to Prevent Necrotizing Enterocolitis

(2013) Ravi Mangal Patel et al.   CLINICS IN PERINATOLOGY

Transcriptomics in the RNA-seq era

(2013) Paul A McGettigan   CURRENT OPINION IN CHEMICAL BIOLOGY

Mitigating amphibian chytridiomycosis with bioaugmentation: characteristics of effective probiotics and strategies for their selection and use

(2013) Molly C. Bletz et al.   ECOLOGY LETTERS

Omics for the study of probiotic microorganisms

(2013) Borja Sánchez et al.   FOOD RESEARCH INTERNATIONAL

Microbial community dynamics and effect of environmental microbial reservoirs on red-backed salamanders (Plethodon cinereus)

(2013) Andrew H Loudon et al.   ISME Journal

IMMUNIZATION IS INEFFECTIVE AT PREVENTING INFECTION AND MORTALITY DUE TO THE AMPHIBIAN CHYTRID FUNGUS BATRACHOCHYTRIUM DENDROBATIDIS

(2013) Mary J. Stice et al.   JOURNAL OF WILDLIFE DISEASES

Genetic evidence for a high diversity and wide distribution of endemic strains of the pathogenic chytrid fungus Batrachochytrium dendrobatidis in wild Asian amphibians

(2013) Arnaud Bataille et al.   MOLECULAR ECOLOGY

The amphibian skin-associated microbiome across species, space and life history stages

(2013) Jordan G. Kueneman et al.   MOLECULAR ECOLOGY

Stability and phylogenetic correlation in gut microbiota: lessons from ants and apes

(2013) Jon G. Sanders et al.   MOLECULAR ECOLOGY

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

Variation in Thermal Performance of a Widespread Pathogen, the Amphibian Chytrid Fungus Batrachochytrium dendrobatidis

(2013) Lisa A. Stevenson et al.   PLoS One

Batrachochytrium salamandrivorans sp. nov. causes lethal chytridiomycosis in amphibians

(2013) A. Martel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metabolic modeling of species interaction in the human microbiome elucidates community-level assembly rules

(2013) R. Levy et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Distinct antimicrobial peptide expression determines host species-specific bacterial associations

(2013) S. Franzenburg et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Hologenomic Basis of Speciation: Gut Bacteria Cause Hybrid Lethality in the Genus Nasonia

(2013) R. M. Brucker et al.   SCIENCE

The microbiome extends to subepidermal compartments of normal skin

(2013) Teruaki Nakatsuji et al.   Nature Communications

Hot bodies protect amphibians against chytrid infection in nature

(2013) Jodi J. L. Rowley et al.   Scientific Reports

Chromosomal Copy Number Variation, Selection and Uneven Rates of Recombination Reveal Cryptic Genome Diversity Linked to Pathogenicity

(2013) Rhys A. Farrer et al.   PLoS Genetics

Proteinaceous determinants of surface colonization in bacteria: bacterial adhesion and biofilm formation from a protein secretion perspective

(2013) Caroline Chagnot et al.   Frontiers in Microbiology

A comprehensive evaluation of multicategory classification methods for microbiomic data

(2013) Alexander Statnikov et al.   Microbiome

Integrative analysis of the microbiome and metabolome of the human intestinal mucosal surface reveals exquisite inter-relationships

(2013) Ian H McHardy et al.   Microbiome

A View from Above: Cloud Plots to Visualize Global Metabolomic Data

(2012) Gary J. Patti et al.   ANALYTICAL CHEMISTRY

From Animalcules to an Ecosystem: Application of Ecological Concepts to the Human Microbiome

(2012) Noah Fierer et al.   Annual Review of Ecology Evolution and Systematics

Efficient statistical significance approximation for local similarity analysis of high-throughput time series data

(2012) Li C. Xia et al.   BIOINFORMATICS

Soil bioaugmentation with amphibian cutaneous bacteria protects amphibian hosts from infection by Batrachochytrium dendrobatidis

(2012) Carly R. Muletz et al.   BIOLOGICAL CONSERVATION

Molecular ecological network analyses

(2012) Ye Deng et al.   BMC BIOINFORMATICS

Tolerance of fungal infection in European water frogs exposed to Batrachochytrium dendrobatidis after experimental reduction of innate immune defenses

(2012) Douglas C Woodhams et al.   BMC Veterinary Research

Computational systems biology and in silico modeling of the human microbiome

(2012) E. Borenstein   BRIEFINGS IN BIOINFORMATICS

Changes in cutaneous microbial abundance with sloughing: possible implications for infection and disease in amphibians

(2012) EA Meyer et al.   DISEASES OF AQUATIC ORGANISMS

Screening bacterial metabolites for inhibitory effects against Batrachochytrium dendrobatidis using a spectrophotometric assay

(2012) SC Bell et al.   DISEASES OF AQUATIC ORGANISMS

Towards a Better Understanding of the Use of Probiotics for Preventing Chytridiomycosis in Panamanian Golden Frogs

(2012) Matthew H. Becker et al.   EcoHealth

Hybrid advantage in skin peptide immune defenses of water frogs (Pelophylax esculentus) at risk from emerging pathogens

(2012) Janine M. Daum et al.   INFECTION GENETICS AND EVOLUTION

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Synergistic Inhibition of the Lethal Fungal Pathogen Batrachochytrium dendrobatidis: The Combined Effect of Symbiotic Bacterial Metabolites and Antimicrobial Peptides of the Frog Rana muscosa

(2012) Jillian M. Myers et al.   JOURNAL OF CHEMICAL ECOLOGY

Novel, panzootic and hybrid genotypes of amphibian chytridiomycosis associated with the bullfrog trade

(2012) LISA M. SCHLOEGEL et al.   MOLECULAR ECOLOGY

Emerging fungal threats to animal, plant and ecosystem health

(2012) Matthew C. Fisher et al.   NATURE

Next-generation proteomics: towards an integrative view of proteome dynamics

(2012) A. F. Maarten Altelaar et al.   NATURE REVIEWS GENETICS

Dual RNA-seq of pathogen and host

(2012) Alexander J. Westermann et al.   NATURE REVIEWS MICROBIOLOGY

Microbial interactions: from networks to models

(2012) Karoline Faust et al.   NATURE REVIEWS MICROBIOLOGY

HMDB 3.0—The Human Metabolome Database in 2013

(2012) David S. Wishart et al.   NUCLEIC ACIDS RESEARCH

Novel techniques and findings in the study of plant microbiota: Search for plant probiotics

(2012) Aleš Berlec   PLANT SCIENCE

Mass spectral molecular networking of living microbial colonies

(2012) J. Watrous et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Temperature alters reproductive life history patterns in Batrachochytrium dendrobatidis, a lethal pathogen associated with the global loss of amphibians

(2012) Jamie Voyles et al.   Ecology and Evolution

Microbial Co-occurrence Relationships in the Human Microbiome

(2012) Karoline Faust et al.   PLoS Computational Biology

Inferring Correlation Networks from Genomic Survey Data

(2012) Jonathan Friedman et al.   PLoS Computational Biology

Targeted Restoration of the Intestinal Microbiota with a Simple, Defined Bacteriotherapy Resolves Relapsing Clostridium difficile Disease in Mice

(2012) Trevor D. Lawley et al.   PLoS Pathogens

Efficient and robust RNA-seq process for cultured bacteria and complex community transcriptomes

(2012) Georgia Giannoukos et al.   GENOME BIOLOGY

Social Immunity in Amphibians: Evidence for Vertical Transmission of Innate Defenses

(2011) Jenifer B. Walke et al.   BIOTROPICA

Human-Associated Microbial Signatures: Examining Their Predictive Value

(2011) Dan Knights et al.   Cell Host & Microbe

Structural diversity and species distribution of host-defense peptides in frog skin secretions

(2011) J. Michael Conlon   CELLULAR AND MOLECULAR LIFE SCIENCES

Differential Host Susceptibility to Batrachochytrium dendrobatidis, an Emerging Amphibian Pathogen

(2011) C. L. SEARLE et al.   CONSERVATION BIOLOGY

THE ROLES OF HOST EVOLUTIONARY RELATIONSHIPS (GENUS: NASONIA) AND DEVELOPMENT IN STRUCTURING MICROBIAL COMMUNITIES

(2011) Robert M. Brucker et al.   EVOLUTION

The ebb and flow of antimicrobial skin peptides defends northern leopard frogs (Rana pipiens) against chytridiomycosis

(2011) James D. Pask et al.   GLOBAL CHANGE BIOLOGY

Amphibian Immune Defenses against Chytridiomycosis: Impacts of Changing Environments

(2011) L. A. Rollins-Smith et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

Co-occurrence patterns for abundant marine archaeal and bacterial lineages in the deep chlorophyll maximum of coastal California

(2011) J Michael Beman et al.   ISME Journal

Marine bacterial, archaeal and protistan association networks reveal ecological linkages

(2011) Joshua A Steele et al.   ISME Journal

Co-habiting amphibian species harbor unique skin bacterial communities in wild populations

(2011) Valerie J McKenzie et al.   ISME Journal

Metaproteogenomic analysis of microbial communities in the phyllosphere and rhizosphere of rice

(2011) Claudia Knief et al.   ISME Journal

Using network analysis to explore co-occurrence patterns in soil microbial communities

(2011) Albert Barberán et al.   ISME Journal

Gut of Red-backed Salamanders (Plethodon cinereus) May Serve as a Reservoir for an Antifungal Cutaneous Bacterium

(2011) Patrick J. Wiggins et al.   JOURNAL OF HERPETOLOGY

Probiotics, prebiotics, and synbiotics: impact on the gut immune system and allergic reactions

(2011) P. Gourbeyre et al.   JOURNAL OF LEUKOCYTE BIOLOGY

Exploration of community traits as ecological markers in microbial metagenomes

(2011) ALBERT BARBERÁN et al.   MOLECULAR ECOLOGY

Enterotypes of the human gut microbiome

(2011) Manimozhiyan Arumugam et al.   NATURE

The skin microbiome

(2011) Elizabeth A. Grice et al.   NATURE REVIEWS MICROBIOLOGY

Unravelling the effects of the environment and host genotype on the gut microbiome

(2011) Aymé Spor et al.   NATURE REVIEWS MICROBIOLOGY

Multiple emergences of genetically diverse amphibian-infecting chytrids include a globalized hypervirulent recombinant lineage

(2011) R. A. Farrer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metagenomic systems biology of the human gut microbiome reveals topological shifts associated with obesity and inflammatory bowel disease

(2011) S. Greenblum et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

MHC genotypes associate with resistance to a frog-killing fungus

(2011) A. E. Savage et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Detecting Novel Associations in Large Data Sets

(2011) D. N. Reshef et al.   SCIENCE

Phylogenetic Molecular Ecological Network of Soil Microbial Communities in Response to Elevated CO2

(2011) J. Zhou et al.   mBio

Community transcriptomics reveals universal patterns of protein sequence conservation in natural microbial communities

(2011) Frank J Stewart et al.   GENOME BIOLOGY

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

Mycolic Acid-Containing Bacteria Induce Natural-Product Biosynthesis inStreptomycesSpecies

(2010) Hiroyasu Onaka et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Prebiotics in aquaculture: a review

(2010) E. RINGØ et al.   AQUACULTURE NUTRITION

Psychrotrophic Strain of Janthinobacterium lividum from a Cold Alaskan Soil Produces Prodigiosin

(2010) Patrick D. Schloss et al.   DNA AND CELL BIOLOGY

Strategies for culture of ‘unculturable’ bacteria

(2010) Sonia R. Vartoukian et al.   FEMS MICROBIOLOGY LETTERS

Immune Defenses against Batrachochytrium dendrobatidis, a Fungus Linked to Global Amphibian Declines, in the South African Clawed Frog, Xenopus laevis

(2010) J. P. Ramsey et al.   INFECTION AND IMMUNITY

Supervised classification of microbiota mitigates mislabeling errors

(2010) Dan Knights et al.   ISME Journal

Microbiota restoration: natural and supplemented recovery of human microbial communities

(2010) Gregor Reid et al.   NATURE REVIEWS MICROBIOLOGY

Mapping Change in Large Networks

(2010) Martin Rosvall et al.   PLoS One

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Global Emergence ofBatrachochytrium dendrobatidisand Amphibian Chytridiomycosis in Space, Time, and Host

(2009) Matthew C. Fisher et al.   Annual Review of Microbiology

The Bacterially Produced Metabolite Violacein Is Associated with Survival of Amphibians Infected with a Lethal Fungus

(2009) M. H. Becker et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Bacterial Adhesins in Host-Microbe Interactions

(2009) Kimberly A. Kline et al.   Cell Host & Microbe

Variations in the expressed antimicrobial peptide repertoire of northern leopard frog (Rana pipiens) populations suggest intraspecies differences in resistance to pathogens

(2009) Jacob A. Tennessen et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Skin microbes on frogs prevent morbidity and mortality caused by a lethal skin fungus

(2009) Reid N Harris et al.   ISME Journal

Topological Signatures of Species Interactions in Metabolic Networks

(2009) Elhanan Borenstein et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Sequencing technologies — the next generation

(2009) Michael L. Metzker   NATURE REVIEWS GENETICS

Metabolic-network-driven analysis of bacterial ecological strategies

(2009) Shiri Freilich et al.   GENOME BIOLOGY

LIFE-HISTORY TRADE-OFFS INFLUENCE DISEASE IN CHANGING CLIMATES: STRATEGIES OF AN AMPHIBIAN PATHOGEN

(2008) Douglas C. Woodhams et al.   ECOLOGY

Amphibian Chemical Defense: Antifungal Metabolites of the Microsymbiont Janthinobacterium lividum on the Salamander Plethodon cinereus

(2008) Robert M. Brucker et al.   JOURNAL OF CHEMICAL ECOLOGY

HMDB: a knowledgebase for the human metabolome

(2008) D. S. Wishart et al.   NUCLEIC ACIDS RESEARCH

Are we in the midst of the sixth mass extinction? A view from the world of amphibians

(2008) D. B. Wake et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Large-scale reconstruction and phylogenetic analysis of metabolic environments

(2008) E. Borenstein et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metagenome analysis of an extreme microbial symbiosis reveals eurythermal adaptation and metabolic flexibility

(2008) J. J. Grzymski et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bat White-Nose Syndrome: An Emerging Fungal Pathogen?

(2008) D. S. Blehert et al.   SCIENCE

Probiotics in aquaculture: The need, principles and mechanisms of action and screening processes

(2007) Aditya Kesarcodi-Watson et al.   AQUACULTURE