antiSMASH 4.0—improvements in chemistry prediction and gene cluster boundary identification

A new genome-mining tool redefines the lasso peptide biosynthetic landscape

(2017) Jonathan I Tietz et al.   Nature Chemical Biology

The evolution of genome mining in microbes – a review

(2016) Nadine Ziemert et al.   NATURAL PRODUCT REPORTS

Bacterial terpene cyclases

(2016) Jeroen S. Dickschat   NATURAL PRODUCT REPORTS

MicroScope in 2017: an expanding and evolving integrated resource for community expertise of microbial genomes

(2016) David Vallenet et al.   NUCLEIC ACIDS RESEARCH

The antiSMASH database, a comprehensive database of microbial secondary metabolite biosynthetic gene clusters

(2016) Kai Blin et al.   NUCLEIC ACIDS RESEARCH

Indexing the Pseudomonas specialized metabolome enabled the discovery of poaeamide B and the bananamides

(2016) Don D. Nguyen et al.   Nature Microbiology

The GenebldA, a Regulator of Morphological Differentiation and Antibiotic Production inStreptomyces

(2015) Stefanie Hackl et al.   ARCHIV DER PHARMAZIE

Enzyme Function Initiative-Enzyme Similarity Tool (EFI-EST): A web tool for generating protein sequence similarity networks

(2015) John A. Gerlt et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

CASSIS and SMIPS: promoter-based prediction of secondary metabolite gene clusters in eukaryotic genomes

(2015) Thomas Wolf et al.   BIOINFORMATICS

Minimum Information about a Biosynthetic Gene cluster

(2015) Marnix H Medema et al.   Nature Chemical Biology

Computational approaches to natural product discovery

(2015) Marnix H Medema et al.   Nature Chemical Biology

antiSMASH 3.0—a comprehensive resource for the genome mining of biosynthetic gene clusters

(2015) Tilmann Weber et al.   NUCLEIC ACIDS RESEARCH

The Pfam protein families database: towards a more sustainable future

(2015) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

An automated Genomes-to-Natural Products platform (GNP) for the discovery of modular natural products

(2015) Chad W. Johnston et al.   Nature Communications

Insights into Secondary Metabolism from a Global Analysis of Prokaryotic Biosynthetic Gene Clusters

(2014) Peter Cimermancic et al.   CELL

In silico tools for the analysis of antibiotic biosynthetic pathways

(2014) Tilmann Weber   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

Predicting substrate specificity of adenylation domains of nonribosomal peptide synthetases and other protein properties by latent semantic indexing

(2013) Damir Baranašić et al.   JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY

antiSMASH 2.0—a versatile platform for genome mining of secondary metabolite producers

(2013) Kai Blin et al.   NUCLEIC ACIDS RESEARCH

Classification of the Adenylation and Acyl-Transferase Activity of NRPS and PKS Systems Using Ensembles of Substrate Specific Hidden Markov Models

(2013) Barzan I. Khayatt et al.   PLoS One

The Natural Product Domain Seeker NaPDoS: A Phylogeny Based Bioinformatic Tool to Classify Secondary Metabolite Gene Diversity

(2012) Nadine Ziemert et al.   PLoS One

NRPSsp: non-ribosomal peptide synthase substrate predictor

(2011) Carlos Prieto et al.   BIOINFORMATICS

NRPSpredictor2—a web server for predicting NRPS adenylation domain specificity

(2011) Marc Röttig et al.   NUCLEIC ACIDS RESEARCH

antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences

(2011) Marnix H. Medema et al.   NUCLEIC ACIDS RESEARCH

Automated genome mining for natural products

(2009) Michael HT Li et al.   BMC BIOINFORMATICS