Biochemistry, genetics and biotechnology of glycerol utilization in Pseudomonas species

Phenazine production promotes antibiotic tolerance and metabolic heterogeneity in Pseudomonas aeruginosa biofilms

(2019) Konstanze T. Schiessl et al.   Nature Communications

Characterization of medium-chain-length polyhydroxyalkanoate biosynthesis by Pseudomonas mosselii TO7 using crude glycerol

(2018) Ming-Hsu Liu et al.   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

Engineering and systems-level analysis of Pseudomonas chlororaphis for production of phenazine-1-carboxamide using glycerol as the cost-effective carbon source

(2018) Ruilian Yao et al.   Biotechnology for Biofuels

Engineering microorganisms for improving polyhydroxyalkanoate biosynthesis

(2018) Guo-Qiang Chen et al.   CURRENT OPINION IN BIOTECHNOLOGY

The power of synthetic biology for bioproduction, remediation and pollution control

(2018) Víctor de Lorenzo et al.   EMBO REPORTS

Maximize rhamnolipid production with low foaming and high yield

(2018) Maysam Sodagari et al.   ENZYME AND MICROBIAL TECHNOLOGY

Lysine production from the sugar alcohol mannitol: Design of the cell factory Corynebacterium glutamicum SEA-3 through integrated analysis and engineering of metabolic pathway fluxes

(2018) Sarah Lisa Hoffmann et al.   METABOLIC ENGINEERING

Pseudomonas putida as a functional chassis for industrial biocatalysis: From native biochemistry to trans -metabolism

(2018) Pablo I. Nikel et al.   METABOLIC ENGINEERING

Metabolic engineering of Pseudomonas taiwanensis VLB120 with minimal genomic modifications for high-yield phenol production

(2018) Benedikt Wynands et al.   METABOLIC ENGINEERING

Enabling the valorization of guaiacol-based lignin: Integrated chemical and biochemical production of cis , cis -muconic acid using metabolically engineered Amycolatopsis sp ATCC 39116

(2018) Nadja Barton et al.   METABOLIC ENGINEERING

From lignin to nylon: Cascaded chemical and biochemical conversion using metabolically engineered Pseudomonas putida

(2018) Michael Kohlstedt et al.   METABOLIC ENGINEERING

Oxygen effects on rhamnolipids production by Pseudomonas aeruginosa

(2018) Feng Zhao et al.   Microbial Cell Factories

Destination bioeconomy – The path towards a smarter, more sustainable future

(2018) Joanna Dupont-Inglis et al.   New Biotechnology

Convergent Metabolic Specialization through Distinct Evolutionary Paths in Pseudomonas aeruginosa

(2018) Ruggero La Rosa et al.   mBio

In Vivo Assimilation of One-Carbon via a Synthetic Reductive Glycine Pathway in Escherichia coli

(2018) Oren Yishai et al.   ACS Synthetic Biology

Development of a Plasmid-Free Biosynthetic Pathway for Enhanced Muconic Acid Production in Pseudomonas chlororaphis HT66

(2018) Songwei Wang et al.   ACS Synthetic Biology

Regulation of carbohydrate degradation pathways in Pseudomonas involves a versatile set of transcriptional regulators

(2018) Zulema Udaondo et al.   Microbial Biotechnology

Chasing bacterial chassis for metabolic engineering: a perspective review from classical to non-traditional microorganisms

(2018) Patricia Calero et al.   Microbial Biotechnology

On the road towards tailor-made rhamnolipids: current state and perspectives

(2018) Andreas Wittgens et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Deciphering bacterial xylose metabolism and metabolic engineering of industrial microorganisms for use as efficient microbial cell factories

(2018) Donghyuk Kim et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

From systems biology to metabolically engineered cells — an omics perspective on the development of industrial microbes

(2018) Judith Becker et al.   CURRENT OPINION IN MICROBIOLOGY

High-throughput optimization of medium components and culture conditions for the efficient production of a lipopeptide pseudofactin by Pseudomonas fluorescens BD5

(2018) Piotr Biniarz et al.   Microbial Cell Factories

The growing U.S. bioeconomy: Drivers, development and constraints

(2018) Mingxin Guo et al.   New Biotechnology

Enhanced biosynthesis of phenazine-1-carboxamide by Pseudomonas chlororaphis strains using statistical experimental designs

(2018) Huasong Peng et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Oxygen Limitation Enhances the Antimicrobial Activity of Fosfomycin in Pseudomonas aeruginosa Following Overexpression of glpT Which Encodes Glycerol-3-Phosphate/Fosfomycin Symporter

(2018) Hidetada Hirakawa et al.   Frontiers in Microbiology

Microbial biosurfactants for oil spill remediation: pitfalls and potentials

(2018) Seema Patel et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

A Post-translational Metabolic Switch Enables Complete Decoupling of Bacterial Growth from Biopolymer Production in Engineered Escherichia coli

(2018) Gonzalo Durante-Rodríguez et al.   ACS Synthetic Biology

Chemistry as biology by design

(2018) Kristala L. J. Prather   Microbial Biotechnology

The important versus the exciting: reining contradictions in contemporary biotechnology

(2018) Víctor de Lorenzo et al.   Microbial Biotechnology

Biotechnological production of aromatic compounds of the extended shikimate pathway from renewable biomass

(2017) Jin-Ho Lee et al.   JOURNAL OF BIOTECHNOLOGY

Designer rhamnolipids by reduction of congener diversity: production and characterization

(2017) Till Tiso et al.   Microbial Cell Factories

Utilization of biodiesel derived-glycerol for 1,3-PD and citric acid production

(2017) Laura Mitrea et al.   Microbial Cell Factories

Transcriptome analysis of Pseudomonas mediterranea and P. corrugata plant pathogens during accumulation of medium-chain-length PHAs by glycerol bioconversion

(2017) Grazia Licciardello et al.   New Biotechnology

Producing microbial polyhydroxyalkanoate (PHA) biopolyesters in a sustainable manner

(2017) Martin Koller et al.   New Biotechnology

New insights into Pseudomonas fluorescens alginate biosynthesis relevant for the establishment of an efficient production process for microbial alginates

(2017) Susan Maleki et al.   New Biotechnology

Step by Step, Cell by Cell: Quantification of the Bacterial Cell Cycle

(2017) Matteo Osella et al.   TRENDS IN MICROBIOLOGY

Experimental validation of in silico estimated biomass yields of Pseudomonas putida KT2440

(2017) Sarah Beate Hintermayer et al.   Biotechnology Journal

Phenotype inference in an Escherichia coli strain panel

(2017) Marco Galardini et al.   eLife

A novel programmable lysozyme-based lysis system in Pseudomonas putida for biopolymer production

(2017) José Manuel Borrero-de Acuña et al.   Scientific Reports

Phasins, Multifaceted Polyhydroxyalkanoate Granule-Associated Proteins

(2016) Mariela P. Mezzina et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Glycerol metabolism promotes biofilm formation by Pseudomonas aeruginosa

(2016) Jessica Scoffield et al.   CANADIAN JOURNAL OF MICROBIOLOGY

Sugar Synthesis from CO2 in Escherichia coli

(2016) Niv Antonovsky et al.   CELL

Gene expression variability in clonal populations: Causes and consequences

(2016) Stefanie Roberfroid et al.   CRITICAL REVIEWS IN MICROBIOLOGY

Opportunities and challenges in biological lignin valorization

(2016) Gregg T Beckham et al.   CURRENT OPINION IN BIOTECHNOLOGY

The revisited genome of Pseudomonas putida KT2440 enlightens its value as a robust metabolic chassis

(2016) Eugeni Belda et al.   ENVIRONMENTAL MICROBIOLOGY

Metabolic networks to generate pyruvate, PEP and ATP from glycerol in Pseudomonas fluorescens

(2016) Azhar Alhasawi et al.   ENZYME AND MICROBIAL TECHNOLOGY

Integrated analysis of gene expression and metabolic fluxes in PHA-producing Pseudomonas putida grown on glycerol

(2016) Veronique Beckers et al.   Microbial Cell Factories

Pseudomonas putida as a platform for the synthesis of aromatic compounds

(2016) Carlos Molina-Santiago et al.   MICROBIOLOGY-SGM

A Metabolic Widget Adjusts the Phosphoenolpyruvate-Dependent Fructose Influx in Pseudomonas putida

(2016) Max Chavarría et al.   mSystems

A novel biocatalyst for efficient production of 2-oxo-carboxylates using glycerol as the cost-effective carbon source

(2015) Yujiao Wang et al.   Biotechnology for Biofuels

High-throughput bacterial functional genomics in the sequencing era

(2015) Andrew N Gray et al.   CURRENT OPINION IN MICROBIOLOGY

Applying systems biology tools to studyn-butanol degradation inPseudomonas putidaKT2440

(2015) Tobias Vallon et al.   ENGINEERING IN LIFE SCIENCES

The RNA chaperone Hfq enables the environmental stress tolerance super-phenotype of P seudomonas putida

(2015) Alejandro Arce-Rodríguez et al.   ENVIRONMENTAL MICROBIOLOGY

A holistic view of polyhydroxyalkanoate metabolism in Pseudomonas putida

(2015) Auxiliadora Prieto et al.   ENVIRONMENTAL MICROBIOLOGY

Pseudomonas putidaKT2440 Strain Metabolizes Glucose through a Cycle Formed by Enzymes of the Entner-Doudoroff, Embden-Meyerhof-Parnas, and Pentose Phosphate Pathways

(2015) Pablo I. Nikel et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Lipopeptide biosurfactant viscosin enhances dispersal of Pseudomonas fluorescens SBW25 biofilms

(2015) Lise Bonnichsen et al.   MICROBIOLOGY-SGM

A functional perspective on phenotypic heterogeneity in microorganisms

(2015) Martin Ackermann   NATURE REVIEWS MICROBIOLOGY

Enhanced annotations and features for comparing thousands ofPseudomonasgenomes in the Pseudomonas genome database

(2015) Geoffrey L. Winsor et al.   NUCLEIC ACIDS RESEARCH

The Glycerol-Dependent Metabolic Persistence of Pseudomonas putida KT2440 Reflects the Regulatory Logic of the GlpR Repressor

(2015) Pablo I. Nikel et al.   mBio

Metabolic Engineering of Pseudomonas putida KT2440 to Produce Anthranilate from Glucose

(2015) Jannis Kuepper et al.   Frontiers in Microbiology

Quantitative ‘Omics Analyses of Medium Chain Length Polyhydroxyalkanaote Metabolism in Pseudomonas putida LS46 Cultured with Waste Glycerol and Waste Fatty Acids

(2015) Jilagamazhi Fu et al.   PLoS One

Comparison of mcl-Poly(3-hydroxyalkanoates) synthesis by different Pseudomonas putida strains from crude glycerol: citrate accumulates at high titer under PHA-producing conditions

(2014) Ignacio Poblete-Castro et al.   BMC BIOTECHNOLOGY

Evaluation of medium-chain-length polyhydroxyalkanoate production by Pseudomonas putida LS46 using biodiesel by-product streams

(2014) Jilagamazhi Fu et al.   CANADIAN JOURNAL OF MICROBIOLOGY

Polyhydroxyalkanoate Synthesis Affects Biosurfactant Production and Cell Attachment to Hydrocarbons in Pseudomonas sp. KA-08

(2014) Carla Di Martino et al.   CURRENT MICROBIOLOGY

Engineering the diversity of polyesters

(2014) De-Chuan Meng et al.   CURRENT OPINION IN BIOTECHNOLOGY

Adaptation ofBacillus subtiliscarbon core metabolism to simultaneous nutrient limitation and osmotic challenge: a multi-omics perspective

(2014) Michael Kohlstedt et al.   ENVIRONMENTAL MICROBIOLOGY

From the phosphoenolpyruvate phosphotransferase system to selfish metabolism: a story retraced inPseudomonas putida

(2014) Katharina Pflüger-Grau et al.   FEMS MICROBIOLOGY LETTERS

Gene expression analysis of E. coli strains provides insights into the role of gene regulation in diversification

(2014) Marius Vital et al.   ISME Journal

Current trends in polyhydroxyalkanoates (PHAs) biosynthesis: Insights from the recombinant Escherichia coli

(2014) Yoong Kit Leong et al.   JOURNAL OF BIOTECHNOLOGY

Biotechnological domestication of pseudomonads using synthetic biology

(2014) Pablo I. Nikel et al.   NATURE REVIEWS MICROBIOLOGY

Biofuel production: an odyssey from metabolic engineering to fermentation scale-up

(2014) Whitney Hollinshead et al.   Frontiers in Microbiology

Expression of genes involved in rhamnolipid synthesis in Pseudomonas aeruginosa PAO1 in a bioreactor cultivation

(2013) Anke Schmidberger et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Production of 3-hydroxypropionic acid from glycerol by recombinantPseudomonas denitrificans

(2013) Shengfang Zhou et al.   BIOTECHNOLOGY AND BIOENGINEERING

Fermentation of glycerol and production of valuable chemical and biofuel molecules

(2013) Anu Jose Mattam et al.   BIOTECHNOLOGY LETTERS

Metabolic and regulatory rearrangements underlying glycerol metabolism inPseudomonas putida KT2440

(2013) Pablo I. Nikel et al.   ENVIRONMENTAL MICROBIOLOGY

The private life of environmental bacteria: pollutant biodegradation at the single cell level

(2013) Pablo Iván Nikel et al.   ENVIRONMENTAL MICROBIOLOGY

Transcriptional regulation is insufficient to explain substrate-induced flux changes in Bacillus subtilis

(2013) V. Chubukov et al.   Molecular Systems Biology

Transcriptomic fingerprinting ofPseudomonas putidaunder alternative physiological regimes

(2013) Juhyun Kim et al.   Environmental Microbiology Reports

Development of a bioprocess to convert PET derived terephthalic acid and biodiesel derived glycerol to medium chain length polyhydroxyalkanoate

(2012) Shane T. Kenny et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Industrial biotechnology of Pseudomonas putida and related species

(2012) Ignacio Poblete-Castro et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

The role of GlpR repressor inPseudomonas putidaKT2440 growth and PHA production from glycerol

(2012) I. F. Escapa et al.   ENVIRONMENTAL MICROBIOLOGY

The polyhydroxyalkanoate metabolism controls carbon and energy spillage in Pseudomonas putida

(2012) I. F. Escapa et al.   ENVIRONMENTAL MICROBIOLOGY

Characterization of Crude Glycerol from Biodiesel Plants

(2012) Shengjun Hu et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Responses of Pseudomonas putida to toxic aromatic carbon sources

(2012) Tino Krell et al.   JOURNAL OF BIOTECHNOLOGY

Engineering an anaerobic metabolic regime in Pseudomonas putida KT2440 for the anoxic biodegradation of 1,3-dichloroprop-1-ene

(2012) Pablo I. Nikel et al.   METABOLIC ENGINEERING

Growth independent rhamnolipid production from glucose using the non-pathogenic Pseudomonas putida KT2440

(2012) Andreas Wittgens et al.   Microbial Cell Factories

The metabolic response of P. putida KT2442 producing high levels of polyhydroxyalkanoate under single- and multiple-nutrient-limited growth: Highlights from a multi-level omics approach

(2012) Ignacio Poblete-Castro et al.   Microbial Cell Factories

Anr, the anaerobic global regulator, modulates the redox state and oxidative stress resistance in Pseudomonas extremaustralis

(2012) P. M. Tribelli et al.   MICROBIOLOGY-SGM

Multidimensional Optimality of Microbial Metabolism

(2012) R. Schuetz et al.   SCIENCE

Response of Pseudomonas putida KT2440 to Increased NADH and ATP Demand

(2011) Birgitta E. Ebert et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Development of yeast cell factories for consolidated bioprocessing of lignocellulose to bioethanol through cell surface engineering

(2011) Tomohisa Hasunuma et al.   BIOTECHNOLOGY ADVANCES

Functional and Metabolic Effects of Adaptive Glycerol Kinase (GLPK) Mutants inEscherichia coli

(2011) M. Kenyon Applebee et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Microbial utilization of crude glycerol for the production of value-added products

(2011) Rosemary Dobson et al.   JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY

Synthesis and Biosynthetic Trafficking of Membrane Lipids

(2011) T. Blom et al.   Cold Spring Harbor Perspectives in Biology

Elimination of D-Lactate Synthesis Increases Poly(3-Hydroxybutyrate) and Ethanol Synthesis from Glycerol and Affects Cofactor Distribution in Recombinant Escherichia coli

(2010) P. I. Nikel et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Effects of calorie restriction on life span of microorganisms

(2010) Craig Skinner et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

In silicogenome-scale metabolic analysis ofPseudomonas putidaKT2440 for polyhydroxyalkanoate synthesis, degradation of aromatics and anaerobic survival

(2010) Seung Bum Sohn et al.   Biotechnology Journal

Global Regulation of Food Supply by Pseudomonas putida DOT-T1E

(2010) C. Daniels et al.   JOURNAL OF BACTERIOLOGY

Monitoring differences in gene expression levels and polyhydroxyalkanoate (PHA) production in Pseudomonas putida KT2440 grown on different carbon sources

(2010) Qin Wang et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

Selected Pseudomonas putida Strains Able To Grow in the Presence of High Butanol Concentrations

(2009) J. Ruhl et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Bacterial Polyhydroxyalkanoate Granules: Biogenesis, Structure, and Potential Use as Nano-/Micro-Beads in Biotechnological and Biomedical Applications

(2009) Katrin Grage et al.   BIOMACROMOLECULES

Towards the Sustainable Production of Acrolein by Glycerol Dehydration

(2009) Benjamin Katryniok et al.   ChemSusChem

Production of aromatic compounds in bacteria

(2009) Guillermo Gosset   CURRENT OPINION IN BIOTECHNOLOGY

Regulation of Glucose Metabolism inPseudomonas

(2009) Abdelali Daddaoua et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Engineering alternative butanol production platforms in heterologous bacteria

(2009) David R. Nielsen et al.   METABOLIC ENGINEERING

Probing the basis for genotype-phenotype relationships

(2009) Byung-Kwan Cho et al.   NATURE METHODS

Glycerol: A promising and abundant carbon source for industrial microbiology

(2008) Gervásio Paulo da Silva et al.   BIOTECHNOLOGY ADVANCES

A Set of Activators and Repressors Control Peripheral Glucose Pathways in Pseudomonas putida To Yield a Common Central Intermediate

(2008) T. del Castillo et al.   JOURNAL OF BACTERIOLOGY

Regulation of Cyclic Lipopeptide Biosynthesis in Pseudomonas fluorescens by the ClpP Protease

(2008) I. de Bruijn et al.   JOURNAL OF BACTERIOLOGY

Escherichia coli arcA Mutants: Metabolic Profile Characterization of Microaerobic Cultures using Glycerol as a Carbon Source

(2008) Pablo I. Nikel et al.   JOURNAL OF MOLECULAR MICROBIOLOGY AND BIOTECHNOLOGY

A new model for the anaerobic fermentation of glycerol in enteric bacteria: Trunk and auxiliary pathways in Escherichia coli

(2008) Ramon Gonzalez et al.   METABOLIC ENGINEERING

Structure of glycerol-3-phosphate dehydrogenase, an essential monotopic membrane enzyme involved in respiration and metabolism

(2008) J. I. Yeh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA