Integrated analysis of gene expression and metabolic fluxes in PHA-producing Pseudomonas putida grown on glycerol

Advanced Biotechnology: Metabolically Engineered Cells for the Bio-Based Production of Chemicals and Fuels, Materials, and Health-Care Products

(2015) Judith Becker et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

A holistic view of polyhydroxyalkanoate metabolism in Pseudomonas putida

(2015) Auxiliadora Prieto et al.   ENVIRONMENTAL MICROBIOLOGY

Comparison of mcl-Poly(3-hydroxyalkanoates) synthesis by different Pseudomonas putida strains from crude glycerol: citrate accumulates at high titer under PHA-producing conditions

(2014) Ignacio Poblete-Castro et al.   BMC BIOTECHNOLOGY

Evaluation of medium-chain-length polyhydroxyalkanoate production by Pseudomonas putida LS46 using biodiesel by-product streams

(2014) Jilagamazhi Fu et al.   CANADIAN JOURNAL OF MICROBIOLOGY

Microbial community dynamics alleviate stoichiometric constraints during litter decay

(2014) Christina Kaiser et al.   ECOLOGY LETTERS

Adaptation ofBacillus subtiliscarbon core metabolism to simultaneous nutrient limitation and osmotic challenge: a multi-omics perspective

(2014) Michael Kohlstedt et al.   ENVIRONMENTAL MICROBIOLOGY

The Pyruvate-Tricarboxylic Acid Cycle Node

(2014) René Bücker et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Improved Production of Medium-Chain-Length Polyhydroxyalkanoates in Glucose-Based Fed-Batch Cultivations of Metabolically Engineered Pseudomonas putida Strains

(2014) Ignacio Poblete-Castro et al.   JOURNAL OF MICROBIOLOGY AND BIOTECHNOLOGY

Production of medium chain length polyhydroxyalkanoate in metabolic flux optimized Pseudomonas putida

(2014) José Borrero-de Acuña et al.   Microbial Cell Factories

Conversion of Corynebacterium glutamicum from an aerobic respiring to an aerobic fermenting bacterium by inactivation of the respiratory chain

(2013) Abigail Koch-Koerfges et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Swapping of Phasin Modules To Optimize the In Vivo Immobilization of Proteins to Medium-Chain-Length Polyhydroxyalkanoate Granules in Pseudomonas putida

(2013) Nina Dinjaski et al.   BIOMACROMOLECULES

Reconciling in vivo and in silico key biological parameters of Pseudomonas putida KT2440 during growth on glucose under carbon-limited condition

(2013) Jozef BJH van Duuren et al.   BMC BIOTECHNOLOGY

Metabolic and regulatory rearrangements underlying glycerol metabolism inPseudomonas putida KT2440

(2013) Pablo I. Nikel et al.   ENVIRONMENTAL MICROBIOLOGY

Novel Description of mcl-PHA Biosynthesis by Pseudomonas chlororaphis from Animal-Derived Waste

(2013) Alexander Muhr et al.   JOURNAL OF BIOTECHNOLOGY

Advances in the Applications of Polyhydroxyalkanoate Nanoparticles for Novel Drug Delivery System

(2013) Anupama Shrivastav et al.   Biomed Research International

Development of a bioprocess to convert PET derived terephthalic acid and biodiesel derived glycerol to medium chain length polyhydroxyalkanoate

(2012) Shane T. Kenny et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Systems and synthetic metabolic engineering for amino acid production – the heartbeat of industrial strain development

(2012) Judith Becker et al.   CURRENT OPINION IN BIOTECHNOLOGY

The role of GlpR repressor inPseudomonas putidaKT2440 growth and PHA production from glycerol

(2012) I. F. Escapa et al.   ENVIRONMENTAL MICROBIOLOGY

A theoretical reassessment of microbial maintenance and implications for microbial ecology modeling

(2012) Gangsheng Wang et al.   FEMS MICROBIOLOGY ECOLOGY

Physiological and Proteomic Adaptation of "Aromatoleum aromaticum" EbN1 to Low Growth Rates in Benzoate-Limited, Anoxic Chemostats

(2012) K. Trautwein et al.   JOURNAL OF BACTERIOLOGY

In-silico-driven metabolic engineering of Pseudomonas putida for enhanced production of poly-hydroxyalkanoates

(2012) Ignacio Poblete-Castro et al.   METABOLIC ENGINEERING

The metabolic response of P. putida KT2442 producing high levels of polyhydroxyalkanoate under single- and multiple-nutrient-limited growth: Highlights from a multi-level omics approach

(2012) Ignacio Poblete-Castro et al.   Microbial Cell Factories

Systems metabolic engineering of microorganisms for natural and non-natural chemicals

(2012) Jeong Wook Lee et al.   Nature Chemical Biology

Response of Pseudomonas putida KT2440 to Increased NADH and ATP Demand

(2011) Birgitta E. Ebert et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Disruption of β-oxidation pathway in Pseudomonas putida KT2442 to produce new functionalized PHAs with thioester groups

(2011) Isabel F. Escapa et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

From zero to hero—Design-based systems metabolic engineering of Corynebacterium glutamicum for l-lysine production

(2011) Judith Becker et al.   METABOLIC ENGINEERING

In silicogenome-scale metabolic analysis ofPseudomonas putidaKT2440 for polyhydroxyalkanoate synthesis, degradation of aromatics and anaerobic survival

(2010) Seung Bum Sohn et al.   Biotechnology Journal

Monitoring differences in gene expression levels and polyhydroxyalkanoate (PHA) production in Pseudomonas putida KT2440 grown on different carbon sources

(2010) Qin Wang et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

Synergy between 13C-metabolic flux analysis and flux balance analysis for understanding metabolic adaption to anaerobiosis in E. coli

(2010) Xuewen Chen et al.   METABOLIC ENGINEERING

Biosynthesis of poly(3-hydroxydecanoate) and 3-hydroxydodecanoate dominating polyhydroxyalkanoates by β-oxidation pathway inhibited Pseudomonas putida

(2010) Qian Liu et al.   METABOLIC ENGINEERING

Nucleoid-associated PhaF phasin drives intracellular location and segregation of polyhydroxyalkanoate granules in Pseudomonas putida KT2442

(2010) B. Galán et al.   MOLECULAR MICROBIOLOGY

Simultaneous Accumulation and Degradation of Polyhydroxyalkanoates: Futile Cycle or Clever Regulation?

(2009) Qun Ren et al.   BIOMACROMOLECULES

Production of polyhydroxyalkanoates (PHAs) from waste materials and by-products by submerged and solid-state fermentation

(2009) Leda R. Castilho et al.   BIORESOURCE TECHNOLOGY

Understanding and harnessing the microaerobic metabolism of glycerol inEscherichia coli

(2009) Guyton Durnin et al.   BIOTECHNOLOGY AND BIOENGINEERING

Flux Design: In silico design of cell factories based on correlation of pathway fluxes to desired properties

(2009) Guido Melzer et al.   BMC Systems Biology

A microbial polyhydroxyalkanoates (PHA) based bio- and materials industry

(2009) Guo-Qiang Chen   CHEMICAL SOCIETY REVIEWS

Analysis of polyhydroxybutyrate flux limitations by systematic genetic and metabolic perturbations

(2009) Keith E.J. Tyo et al.   METABOLIC ENGINEERING

arrayQualityMetrics—a bioconductor package for quality assessment of microarray data

(2008) Audrey Kauffmann et al.   BIOINFORMATICS

Large-scale computation of elementary flux modes with bit pattern trees

(2008) Marco Terzer et al.   BIOINFORMATICS

A specific drug targeting system based on polyhydroxyalkanoate granule binding protein PhaP fused with targeted cell ligands

(2008) Yong-Chao Yao et al.   BIOMATERIALS

A genome-scale metabolic reconstruction of Pseudomonas putida KT2440: iJN746 as a cell factory

(2008) Juan Nogales et al.   BMC Systems Biology

Maintenance metabolism and carbon fluxes in Bacillus species

(2008) Simon Tännler et al.   Microbial Cell Factories

Carbon catabolite repression in bacteria: many ways to make the most out of nutrients

(2008) Boris Görke et al.   NATURE REVIEWS MICROBIOLOGY

Genome-Scale Reconstruction and Analysis of the Pseudomonas putida KT2440 Metabolic Network Facilitates Applications in Biotechnology

(2008) Jacek Puchałka et al.   PLoS Computational Biology