Adaptation ofBacillus subtiliscarbon core metabolism to simultaneous nutrient limitation and osmotic challenge: a multi-omics perspective

FactoMineR: AnRPackage for Multivariate Analysis

(2015) Sébastien Lê et al.   Journal of Statistical Software

Complex formation between malate dehydrogenase and isocitrate dehydrogenase fromBacillus subtilisis regulated by tricarboxylic acid cycle metabolites

(2013) Maike Bartholomae et al.   FEBS Journal

Bacillus subtilis: from soil bacterium to super-secreting cell factory

(2013) Jan Maarten van Dijl et al.   Microbial Cell Factories

Transcriptional regulation is insufficient to explain substrate-induced flux changes in Bacillus subtilis

(2013) V. Chubukov et al.   Molecular Systems Biology

Rate of environmental change determines stress response specificity

(2013) J. W. Young et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Synthesis, Release, and Recapture of Compatible Solute Proline by Osmotically Stressed Bacillus subtilis Cells

(2012) Tamara Hoffmann et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Osmoprotection of Bacillus subtilis through Import and Proteolysis of Proline-Containing Peptides

(2012) Adrienne Zaprasis et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

FluxMap: A VANTED add-on for the visual exploration of flux distributions in biological networks

(2012) Hendrik Rohn et al.   BMC Systems Biology

Osmotic Control of opuA Expression in Bacillus subtilis and Its Modulation in Response to Intracellular Glycine Betaine and Proline Pools

(2012) T. Hoffmann et al.   JOURNAL OF BACTERIOLOGY

Genetic Control of Osmoadaptive Glycine Betaine Synthesis in Bacillus subtilis through the Choline-Sensing and Glycine Betaine-Responsive GbsR Repressor

(2012) G. Nau-Wagner et al.   JOURNAL OF BACTERIOLOGY

13C-flux Analysis Reveals NADPH-balancing Transhydrogenation Cycles in Stationary Phase of Nitrogen-starvingBacillus subtilis

(2012) Martin Rühl et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Control of glutamate homeostasis in Bacillus subtilis: a complex interplay between ammonium assimilation, glutamate biosynthesis and degradation

(2012) Katrin Gunka et al.   MOLECULAR MICROBIOLOGY

Selected reaction monitoring–based proteomics: workflows, potential, pitfalls and future directions

(2012) Paola Picotti et al.   NATURE METHODS

Global Network Reorganization During Dynamic Adaptations of Bacillus subtilis Metabolism

(2012) J. M. Buescher et al.   SCIENCE

Condition-Dependent Transcriptome Reveals High-Level Regulatory Architecture in Bacillus subtilis

(2012) P. Nicolas et al.   SCIENCE

Efficient, Global-Scale Quantification of Absolute Protein Amounts by Integration of Targeted Mass Spectrometry and Two-Dimensional Gel-Based Proteomics

(2011) Sandra Maass et al.   ANALYTICAL CHEMISTRY

Bacterial growth rate reflects a bottleneck in resource allocation

(2011) A. Goelzer et al.   BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS

Osmotically Controlled Synthesis of the Compatible Solute Proline Is Critical for Cellular Defense of Bacillus subtilis against High Osmolarity

(2011) J. Brill et al.   JOURNAL OF BACTERIOLOGY

Proline Utilization by Bacillus subtilis: Uptake and Catabolism

(2011) S. Moses et al.   JOURNAL OF BACTERIOLOGY

T-box-mediated control of the anabolic proline biosynthetic genes of Bacillus subtilis

(2011) J. Brill et al.   MICROBIOLOGY-SGM

Defining the structure of the general stress regulon of Bacillus subtilis using targeted microarray analysis and random forest classification

(2011) P. Nannapaneni et al.   MICROBIOLOGY-SGM

A metabolomics and proteomics study of the adaptation of Staphylococcus aureus to glucose starvation

(2011) Manuel Liebeke et al.   Molecular BioSystems

SubtiWiki--a comprehensive community resource for the model organism Bacillus subtilis

(2011) U. Mader et al.   NUCLEIC ACIDS RESEARCH

Characterization of the global impact of low temperature gas plasma on vegetative microorganisms

(2011) Theresa Winter et al.   PROTEOMICS

A protocol for the investigation of the intracellular Staphylococcus aureus metabolome

(2010) Hanna Meyer et al.   ANALYTICAL BIOCHEMISTRY

Bacterial Osmoregulation: A Paradigm for the Study of Cellular Homeostasis

(2010) Janet M. Wood   Annual Review of Microbiology

Metabolic fluxes and beyond—systems biology understanding and engineering of microbial metabolism

(2010) Michael Kohlstedt et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Skyline: an open source document editor for creating and analyzing targeted proteomics experiments

(2010) Brendan MacLean et al.   BIOINFORMATICS

A Metabolomic View of Staphylococcus aureus and Its Ser/Thr Kinase and Phosphatase Deletion Mutants: Involvement in Cell Wall Biosynthesis

(2010) Manuel Liebeke et al.   CHEMISTRY & BIOLOGY

Physical interactions between tricarboxylic acid cycle enzymes in Bacillus subtilis: Evidence for a metabolon

(2010) Frederik M. Meyer et al.   METABOLIC ENGINEERING

Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis

(2010) Andreas Otto et al.   Nature Communications

Metabolic Engineering of the Tricarboxylic Acid Cycle for Improved Lysine Production by Corynebacterium glutamicum

(2009) J. Becker et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

integrOmics: an R package to unravel relationships between two omics datasets

(2009) Kim-Anh Lê Cao et al.   BIOINFORMATICS

Visualizing post genomics data-sets on customized pathway maps by ProMeTra – aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an example

(2009) Heiko Neuweger et al.   BMC Systems Biology

A Comprehensive Proteomics and Transcriptomics Analysis of Bacillus subtilis Salt Stress Adaptation

(2009) H. Hahne et al.   JOURNAL OF BACTERIOLOGY

OpenFLUX: efficient modelling software for 13C-based metabolic flux analysis

(2009) Lake-Ee Quek et al.   Microbial Cell Factories

Reconstruction and analysis of the genetic and metabolic regulatory networks of the central metabolism of Bacillus subtilis

(2008) Anne Goelzer et al.   BMC Systems Biology

The Global Repressor SugR Controls Expression of Genes of Glycolysis and of the L-Lactate Dehydrogenase LdhA in Corynebacterium glutamicum

(2008) V. Engels et al.   JOURNAL OF BACTERIOLOGY

Carbon Catabolite Repression in Bacillus subtilis: Quantitative Analysis of Repression Exerted by Different Carbon Sources

(2008) K. D. Singh et al.   JOURNAL OF BACTERIOLOGY

Glutamate Metabolism in Bacillus subtilis: Gene Expression and Enzyme Activities Evolved To Avoid Futile Cycles and To Allow Rapid Responses to Perturbations of the System

(2008) F. M. Commichau et al.   JOURNAL OF BACTERIOLOGY

Maintenance metabolism and carbon fluxes in Bacillus species

(2008) Simon Tännler et al.   Microbial Cell Factories

Physiological response of Corynebacterium glutamicum to oxidative stress induced by deletion of the transcriptional repressor McbR

(2008) J. O. Kromer et al.   MICROBIOLOGY-SGM

Depletion of thiol-containing proteins in response to quinones inBacillus subtilis

(2008) Manuel Liebeke et al.   MOLECULAR MICROBIOLOGY

Ecology and genomics of Bacillus subtilis

(2008) Ashlee M. Earl et al.   TRENDS IN MICROBIOLOGY