Pseudomonas putidaKT2440 Strain Metabolizes Glucose through a Cycle Formed by Enzymes of the Entner-Doudoroff, Embden-Meyerhof-Parnas, and Pentose Phosphate Pathways

Large-Scale13C Flux Profiling Reveals Conservation of the Entner-Doudoroff Pathway as a Glycolytic Strategy among Marine Bacteria That Use Glucose

(2015) Arne Klingner et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Mutational Analyses of Glucose Dehydrogenase and Glucose-6-Phosphate Dehydrogenase Genes in Pseudomonas fluorescens Reveal Their Effects on Growth and Alginate Production

(2015) Susan Maleki et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Entner–Doudoroff pathway for sulfoquinovose degradation inPseudomonas putidaSQ1

(2015) Ann-Katrin Felux et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Glycerol-Dependent Metabolic Persistence of Pseudomonas putida KT2440 Reflects the Regulatory Logic of the GlpR Repressor

(2015) Pablo I. Nikel et al.   mBio

The Functional Structure of Central Carbon Metabolism in Pseudomonas putida KT2440

(2014) Suresh Sudarsan et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Oxidative stress response in Pseudomonas putida

(2014) Jisun Kim et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Role of Intracellular Carbon Metabolism Pathways in Shigella flexneri Virulence

(2014) E. A. Waligora et al.   INFECTION AND IMMUNITY

Metabolic flux pattern of glucose utilization by Xanthomonas campestris pv. campestris: prevalent role of the Entner–Doudoroff pathway and minor fluxes through the pentose phosphate pathway and glycolysis

(2014) Sarah Schatschneider et al.   Molecular BioSystems

Biotechnological domestication of pseudomonads using synthetic biology

(2014) Pablo I. Nikel et al.   NATURE REVIEWS MICROBIOLOGY

Coordination of microbial metabolism

(2014) Victor Chubukov et al.   NATURE REVIEWS MICROBIOLOGY

Robustness and Plasticity of Metabolic Pathway Flux among Uropathogenic Isolates of Pseudomonas aeruginosa

(2014) Antje Berger et al.   PLoS One

Combined Fluxomics and Transcriptomics Analysis of Glucose Catabolism via a Partially Cyclic Pentose Phosphate Pathway in Gluconobacter oxydans 621H

(2013) Tanja Hanke et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Impact of Expression of EMP Enzymes on Glucose Metabolism in Zymomonas mobilis

(2013) Rachel Ruizhen Chen et al.   APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY

Metabolic and regulatory rearrangements underlying glycerol metabolism inPseudomonas putida KT2440

(2013) Pablo I. Nikel et al.   ENVIRONMENTAL MICROBIOLOGY

The private life of environmental bacteria: pollutant biodegradation at the single cell level

(2013) Pablo Iván Nikel et al.   ENVIRONMENTAL MICROBIOLOGY

Metabolite Profiling to Characterize Disease-related Bacteria

(2013) Volker Behrends et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Accumulation of inorganic polyphosphate enables stress endurance and catalytic vigour in Pseudomonas putida KT2440

(2013) Pablo I Nikel et al.   Microbial Cell Factories

Why are chlorinated pollutants so difficult to degrade aerobically? Redox stress limits 1,3-dichloprop-1-ene metabolism by Pseudomonas pavonaceae

(2013) P. I. Nikel et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The cost of efficiency in energy metabolism

(2013) A. I. Stettner et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Glycolytic strategy as a tradeoff between energy yield and protein cost

(2013) A. Flamholz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Manipulation of the Anoxic Metabolism in Escherichia coli by ArcB Deletion Variants in the ArcBA Two-Component System

(2012) Gonzalo N. Bidart et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The Entner-Doudoroff pathway empowersPseudomonas putida KT2440 with a high tolerance to oxidative stress

(2012) Max Chavarría et al.   ENVIRONMENTAL MICROBIOLOGY

The Entner-Doudoroff Pathway Is Obligatory for Gluconate Utilization and Contributes to the Pathogenicity of Vibrio cholerae

(2012) T. Patra et al.   JOURNAL OF BACTERIOLOGY

Engineering an anaerobic metabolic regime in Pseudomonas putida KT2440 for the anoxic biodegradation of 1,3-dichloroprop-1-ene

(2012) Pablo I. Nikel et al.   METABOLIC ENGINEERING

Rethinking glycolysis: on the biochemical logic of metabolic pathways

(2012) Arren Bar-Even et al.   Nature Chemical Biology

Regulatory Tasks of the Phosphoenolpyruvate-Phosphotransferase System of Pseudomonas putida in Central Carbon Metabolism

(2012) M. Chavarria et al.   mBio

Response of Pseudomonas putida KT2440 to Increased NADH and ATP Demand

(2011) Birgitta E. Ebert et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Collisional fragmentation of central carbon metabolites in LC-MS/MS increases precision of 13C metabolic flux analysis

(2011) Martin Rühl et al.   BIOTECHNOLOGY AND BIOENGINEERING

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases

(2011) R. Caspi et al.   NUCLEIC ACIDS RESEARCH

Ultrahigh Performance Liquid Chromatography−Tandem Mass Spectrometry Method for Fast and Robust Quantification of Anionic and Aromatic Metabolites

(2010) Joerg Martin Buescher et al.   ANALYTICAL CHEMISTRY

Elimination of D-Lactate Synthesis Increases Poly(3-Hydroxybutyrate) and Ethanol Synthesis from Glycerol and Affects Cofactor Distribution in Recombinant Escherichia coli

(2010) P. I. Nikel et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

In silicogenome-scale metabolic analysis ofPseudomonas putidaKT2440 for polyhydroxyalkanoate synthesis, degradation of aromatics and anaerobic survival

(2010) Seung Bum Sohn et al.   Biotechnology Journal

Central Carbon Metabolism as a Minimal Biochemical Walk between Precursors for Biomass and Energy

(2010) Elad Noor et al.   MOLECULAR CELL

Pseudomonas Genome Database: improved comparative analysis and population genomics capability for Pseudomonas genomes

(2010) G. L. Winsor et al.   NUCLEIC ACIDS RESEARCH

Different Biochemical Mechanisms Ensure Network-Wide Balancing of Reducing Equivalents in Microbial Metabolism

(2009) T. Fuhrer et al.   JOURNAL OF BACTERIOLOGY

Metabolic Flux Analysis of Escherichia coli creB and arcA Mutants Reveals Shared Control of Carbon Catabolism under Microaerobic Growth Conditions

(2009) P. I. Nikel et al.   JOURNAL OF BACTERIOLOGY

The Nonphosphorylative Entner-Doudoroff Pathway in the Thermoacidophilic Euryarchaeon Picrophilus torridus Involves a Novel 2-Keto-3-Deoxygluconate- Specific Aldolase

(2009) M. Reher et al.   JOURNAL OF BACTERIOLOGY

Physiological states and energetic adaptation during growth of Pseudomonas putida mt-2 on glucose

(2008) Leith Latrach Tlemçani et al.   ARCHIVES OF MICROBIOLOGY

A genome-scale metabolic reconstruction of Pseudomonas putida KT2440: iJN746 as a cell factory

(2008) Juan Nogales et al.   BMC Systems Biology

Metabolic response of Pseudomonas putida during redox biocatalysis in the presence of a second octanol phase

(2008) Lars M. Blank et al.   FEBS Journal

A Set of Activators and Repressors Control Peripheral Glucose Pathways in Pseudomonas putida To Yield a Common Central Intermediate

(2008) T. del Castillo et al.   JOURNAL OF BACTERIOLOGY

Comprehensive analysis of the metabolome of Pseudomonas putida S12 grown on different carbon sources

(2008) Mariët J. van der Werf et al.   Molecular BioSystems

Genome-Scale Reconstruction and Analysis of the Pseudomonas putida KT2440 Metabolic Network Facilitates Applications in Biotechnology

(2008) Jacek Puchałka et al.   PLoS Computational Biology