The private life of environmental bacteria: pollutant biodegradation at the single cell level

Microbial heterogeneity affects bioprocess robustness: Dynamic single-cell analysis contributes to understanding of microbial populations

(2013) Frank Delvigne et al.   Biotechnology Journal

Analysis of fluorescent reporters indicates heterogeneity in glucose uptake and utilization in clonal bacterial populations

(2013) Nela Nikolic et al.   BMC MICROBIOLOGY

Mass spectrometry-based metabolomics of single yeast cells

(2013) A. J. Ibanez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

In situ identification and N2 and C fixation rates of uncultivated cyanobacteria populations

(2013) Andreas Krupke et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Engineering Multicellular Logic in Bacteria with Metabolic Wires

(2013) Rafael Silva-Rocha et al.   ACS Synthetic Biology

Construction of a Broad-Host-Range Tn7-Based Vector for Single-Copy PBAD-Controlled Gene Expression in Gram-Negative Bacteria

(2012) F. Heath Damron et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Industrial biotechnology of Pseudomonas putida and related species

(2012) Ignacio Poblete-Castro et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

The TOL network ofPseudomonas putidamt-2 processes multiple environmental inputs into a narrowresponse space

(2012) Rafael Silva-Rocha et al.   ENVIRONMENTAL MICROBIOLOGY

The Entner-Doudoroff pathway empowersPseudomonas putida KT2440 with a high tolerance to oxidative stress

(2012) Max Chavarría et al.   ENVIRONMENTAL MICROBIOLOGY

Microbial individuality in the natural environment

(2012) M Ackermann   ISME Journal

Decoding the genetic networks of environmental bacteria: regulatory moonlighting of the TOL system of Pseudomonas putida mt-2

(2012) Rafael Silva-Rocha et al.   ISME Journal

Recent advances in laser tweezers Raman spectroscopy (LTRS) for label-free analysis of single cells

(2012) James W. Chan   Journal of Biophotonics

Implantation of unmarked regulatory and metabolic modules in Gram-negative bacteria with specialised mini-transposon delivery vectors

(2012) Pablo I. Nikel et al.   JOURNAL OF BIOTECHNOLOGY

Picoliter nDEP traps enable time-resolved contactless single bacterial cell analysis in controlled microenvironments

(2012) Frederik S. O. Fritzsch et al.   LAB ON A CHIP

Culture History and Population Heterogeneity as Determinants of Bacterial Adaptation: the Adaptomics of a Single Environmental Transition

(2012) B. Ryall et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Atomic force microscopy: A nanoscopic view of microbial cell surfaces

(2012) Loredana S. Dorobantu et al.   MICRON

Stochasticity of TOL plasmid catabolic promoters sets a bimodal expression regime inPseudomonas putidamt-2 exposed tom-xylene

(2012) Rafael Silva-Rocha et al.   MOLECULAR MICROBIOLOGY

Competition between species can stabilize public-goods cooperation within a species

(2012) Hasan Celiker et al.   Molecular Systems Biology

The Standard European Vector Architecture (SEVA): a coherent platform for the analysis and deployment of complex prokaryotic phenotypes

(2012) Rafael Silva-Rocha et al.   NUCLEIC ACIDS RESEARCH

A GFP-lacZ Bicistronic Reporter System for Promoter Analysis in Environmental Gram-Negative Bacteria

(2012) Rafael Silva-Rocha et al.   PLoS One

Quantitative, Non-Disruptive Monitoring of Transcription in Single Cells with a Broad-Host Range GFP-luxCDABE Dual Reporter System

(2012) Ilaria Maria Benedetti et al.   PLoS One

Ultrasensitivity of the Bacillus subtilis sporulation decision

(2012) J. Narula et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Applications and perspectives of multi-parameter flow cytometry to microbial biofuels production processes

(2012) Teresa Lopes da Silva et al.   TRENDS IN BIOTECHNOLOGY

Life, Death, and In-Between: Meanings and Methods in Microbiology

(2011) Hazel M. Davey   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

pBAM1: an all-synthetic genetic tool for analysis and construction of complex bacterial phenotypes

(2011) Esteban Martínez-García et al.   BMC MICROBIOLOGY

The logic layout of the TOL network of Pseudomonas putida pWW0 plasmid stems from a metabolic amplifier motif (MAM) that optimizes biodegradation of m-xylene

(2011) Rafael Silva-Rocha et al.   BMC Systems Biology

Optical trapping for analytical biotechnology

(2011) Praveen C Ashok et al.   CURRENT OPINION IN BIOTECHNOLOGY

Towards a fast, high specific and reliable discrimination of bacteria on strain level by means of SERS in a microfluidic device

(2011) Angela Walter et al.   LAB ON A CHIP

The evolutionary emergence of stochastic phenotype switching in bacteria

(2011) Paul B Rainey et al.   Microbial Cell Factories

Carbon-13 labelling strategy for studying the ATP metabolism in individual yeast cells by micro-arrays for mass spectrometry

(2011) Pawel L. Urban et al.   Molecular BioSystems

Measuring single-cell gene expression dynamics in bacteria using fluorescence time-lapse microscopy

(2011) Jonathan W Young et al.   Nature Protocols

Experimental evolution of selfish policing in social bacteria

(2011) P. Manhes et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Noise and Robustness in Prokaryotic Regulatory Networks

(2010) Rafael Silva-Rocha et al.   Annual Review of Microbiology

Single-cell analysis and isolation for microbiology and biotechnology: methods and applications

(2010) Satoshi Ishii et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Single cell metabolomics

(2010) Matthias Heinemann et al.   CURRENT OPINION IN BIOTECHNOLOGY

The Crc Global Regulator Inhibits thePseudomonas putidapWW0 Toluene/Xylene Assimilation Pathway by Repressing the Translation of Regulatory and Structural Genes

(2010) Renata Moreno et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Raman microspectroscopy reveals long-term extracellular activity of chlamydiae

(2010) Susanne Haider et al.   MOLECULAR MICROBIOLOGY

The role of physiological heterogeneity in microbial population behavior

(2010) Mary E Lidstrom et al.   Nature Chemical Biology

Where microbiology meets microengineering: design and applications of reporter bacteria

(2010) Jan Roelof van der Meer et al.   NATURE REVIEWS MICROBIOLOGY

Co-Swarming and Local Collapse: Quorum Sensing Conveys Resilience to Bacterial Communities by Localizing Cheater Mutants in Pseudomonas aeruginosa

(2010) Vittorio Venturi et al.   PLoS One

Application of atomic force microscopy in bacterial research

(2010) Loredana S. Dorobantu et al.   SCANNING

A synthetic three-color scaffold for monitoring genetic regulation and noise

(2010) Robert Cox et al.   Journal of Biological Engineering

Single-Cell Ecophysiology of Microbes as Revealed by Raman Microspectroscopy or Secondary Ion Mass Spectrometry Imaging

(2009) Michael Wagner   Annual Review of Microbiology

Architecture-Dependent Noise Discriminates Functionally Analogous Differentiation Circuits

(2009) Tolga Çağatay et al.   CELL

Applications of flow cytometry in environmental microbiology and biotechnology

(2009) Peter L. Bergquist et al.   EXTREMOPHILES

Applications of Transposon-Based Gene Delivery System in Bacteria

(2009) Kyoung-Hee Choi   JOURNAL OF MICROBIOLOGY AND BIOTECHNOLOGY

Experimental evolution of bet hedging

(2009) Hubertus J. E. Beaumont et al.   NATURE

Seeing things: from microcinematography to live cell imaging

(2009) Hannah Landecker   NATURE METHODS

Using movies to analyse gene circuit dynamics in single cells

(2009) James C. W. Locke et al.   NATURE REVIEWS MICROBIOLOGY

Raman tweezers sorting of single microbial cells

(2009) Wei E. Huang et al.   Environmental Microbiology Reports

Mass Spectrometric Method for Analyzing Metabolites in Yeast with Single Cell Sensitivity

(2008) Andrea Amantonico et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Bistability, Epigenetics, and Bet-Hedging in Bacteria

(2008) Jan-Willem Veening et al.   Annual Review of Microbiology

Resolving Genetic Functions within Microbial Populations: In Situ Analyses Using rRNA and mRNA Stable Isotope Probing Coupled with Single-Cell Raman-Fluorescence In Situ Hybridization

(2008) W. E. Huang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Use of flow cytometric methods for single-cell analysis in environmental microbiology

(2008) Kamila Czechowska et al.   CURRENT OPINION IN MICROBIOLOGY

Real-time detection of actively metabolizing microbes by redox sensing as applied to methylotroph populations in Lake Washington

(2008) Marina G Kalyuzhnaya et al.   ISME Journal

Bet-hedging and epigenetic inheritance in bacterial cell development

(2008) J.-W. Veening et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Simultaneous analysis of microbial identity and function using NanoSIMS

(2007) Tianlun Li et al.   ENVIRONMENTAL MICROBIOLOGY