Gene expression variability in clonal populations: Causes and consequences
Published 2016 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Gene expression variability in clonal populations: Causes and consequences
Authors
Keywords
-
Journal
CRITICAL REVIEWS IN MICROBIOLOGY
Volume 42, Issue 6, Pages 969-984
Publisher
Informa UK Limited
Online
2016-01-05
DOI
10.3109/1040841x.2015.1122571
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- RNA-seq based transcriptomic analysis of single bacterial cells
- (2015) Jiangxin Wang et al. Integrative Biology
- The volumes and transcript counts of single cells reveal concentration homeostasis and capture biological noise
- (2015) Hermannus Kempe et al. MOLECULAR BIOLOGY OF THE CELL
- Single Mammalian Cells Compensate for Differences in Cellular Volume and DNA Copy Number through Independent Global Transcriptional Mechanisms
- (2015) Olivia Padovan-Merhar et al. MOLECULAR CELL
- Single prokaryotic cell isolation and total transcript amplification protocol for transcriptomic analysis
- (2015) Yun Kang et al. Nature Protocols
- A GFP promoter fusion library for the study ofSalmonellabiofilm formation and the mode of action of biofilm inhibitors
- (2014) S.C.A. Robijns et al. BIOFOULING
- Single cell sequencing approaches for complex biological systems
- (2014) Timour Baslan et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
- Acute myeloid leukaemia: a paradigm for the clonal evolution of cancer?
- (2014) C. S. Grove et al. Disease Models & Mechanisms
- Massive Diversification in Aging Colonies of Escherichia coli
- (2014) C. Saint-Ruf et al. JOURNAL OF BACTERIOLOGY
- Dynamic Heterogeneity and DNA Methylation in Embryonic Stem Cells
- (2014) Zakary S. Singer et al. MOLECULAR CELL
- Clonal evolution in breast cancer revealed by single nucleus genome sequencing
- (2014) Yong Wang et al. NATURE
- Reconstructing lineage hierarchies of the distal lung epithelium using single-cell RNA-seq
- (2014) Barbara Treutlein et al. NATURE
- Validation of noise models for single-cell transcriptomics
- (2014) Dominic Grün et al. NATURE METHODS
- Recent advances in genomic DNA sequencing of microbial species from single cells
- (2014) Roger S. Lasken et al. NATURE REVIEWS GENETICS
- In the right place at the right time: visualizing and understanding mRNA localization
- (2014) Adina R. Buxbaum et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Single-cell RNA-seq: advances and future challenges
- (2014) Antoine-Emmanuel Saliba et al. NUCLEIC ACIDS RESEARCH
- Highly Multiplexed Subcellular RNA Sequencing in Situ
- (2014) J. H. Lee et al. SCIENCE
- Single-cell analysis reveals gene-expression heterogeneity in syntrophic dual-culture of Desulfovibrio vulgaris with Methanosarcina barkeri
- (2014) Zhenhua Qi et al. Scientific Reports
- Bistable Expression of Virulence Genes in Salmonella Leads to the Formation of an Antibiotic-Tolerant Subpopulation
- (2014) Markus Arnoldini et al. PLOS BIOLOGY
- Analysis of fluorescent reporters indicates heterogeneity in glucose uptake and utilization in clonal bacterial populations
- (2013) Nela Nikolic et al. BMC MICROBIOLOGY
- Frequency determination of rare populations by flow cytometry: A hematopoietic stem cell perspective
- (2013) Alexandra Rundberg Nilsson et al. CYTOMETRY PART A
- Chromatin occupancy patterns of the ETS repressor Yan
- (2013) Jemma L. Webber et al. FLY
- Genetic programs in human and mouse early embryos revealed by single-cell RNA sequencing
- (2013) Zhigang Xue et al. NATURE
- Stabilization of cooperative virulence by the expression of an avirulent phenotype
- (2013) Médéric Diard et al. NATURE
- Quantifying RNA allelic ratios by microfluidic multiplex PCR and sequencing
- (2013) Rui Zhang et al. NATURE METHODS
- Quantitative single-cell RNA-seq with unique molecular identifiers
- (2013) Saiful Islam et al. NATURE METHODS
- Dissecting genomic diversity, one cell at a time
- (2013) Paul C Blainey et al. NATURE METHODS
- Genome dynamics during experimental evolution
- (2013) Jeffrey E. Barrick et al. NATURE REVIEWS GENETICS
- Single-cell RNA-Seq profiling of human preimplantation embryos and embryonic stem cells
- (2013) Liying Yan et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Adaptive noise
- (2013) M. Viney et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Genetic Determinants and Cellular Constraints in Noisy Gene Expression
- (2013) A. Sanchez et al. SCIENCE
- Functional Roles of Pulsing in Genetic Circuits
- (2013) J. H. Levine et al. SCIENCE
- Microanatomy at Cellular Resolution and Spatial Order of Physiological Differentiation in a Bacterial Biofilm
- (2013) D. O. Serra et al. mBio
- A Stimuli-Responsive Nanopore Based on a Photoresponsive Host-Guest System
- (2013) Yi-Lun Ying et al. Scientific Reports
- Coupling Between Noise and Plasticity in E. coli
- (2013) Gajinder Pal Singh G3-Genes Genomes Genetics
- High-Throughput Single-Cell Analysis for Wound Healing Applications
- (2013) Michael Januszyk et al. Advances in Wound Care
- Turning single cells into microarrays by super-resolution barcoding
- (2012) L. Cai Briefings in Functional Genomics
- Quantitative PCR Analysis of DNA, RNAs, and Proteins in the Same Single Cell
- (2012) A. Stahlberg et al. CLINICAL CHEMISTRY
- Clonal evolution in cancer
- (2012) Mel Greaves et al. NATURE
- Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells
- (2012) Daniel Ramsköld et al. NATURE BIOTECHNOLOGY
- Ecological and evolutionary dynamics of coexisting lineages during a long-term experiment with Escherichia coli
- (2012) M. Le Gac et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Two methods for full-length RNA sequencing for low quantities of cells and single cells
- (2012) X. Pan et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Tangled bank of experimentally evolved Burkholderia biofilms reflects selection during chronic infections
- (2012) C. C. Traverse et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Genome-Wide Detection of Single-Nucleotide and Copy-Number Variations of a Single Human Cell
- (2012) C. Zong et al. SCIENCE
- Using Gene Expression Noise to Understand Gene Regulation
- (2012) B. Munsky et al. SCIENCE
- Interplay between gene expression noise and regulatory network architecture
- (2012) Guilhem Chalancon et al. TRENDS IN GENETICS
- CEL-Seq: Single-Cell RNA-Seq by Multiplexed Linear Amplification
- (2012) Tamar Hashimshony et al. Cell Reports
- A Genome-Wide Analysis of Promoter-Mediated Phenotypic Noise in Escherichia coli
- (2012) Olin K. Silander et al. PLoS Genetics
- Salmonella biofilms: An overview on occurrence, structure, regulation and eradication
- (2011) Hans Steenackers et al. FOOD RESEARCH INTERNATIONAL
- Interfering Waves of Adaptation Promote Spatial Mixing
- (2011) Erik A. Martens et al. GENETICS
- Characterization of the single-cell transcriptional landscape by highly multiplex RNA-seq
- (2011) S. Islam et al. GENOME RESEARCH
- Transcript amplification from single bacterium for transcriptome analysis
- (2011) Y. Kang et al. GENOME RESEARCH
- Gene expression analysis of monospecies Salmonella Typhimurium biofilms using Differential Fluorescence Induction
- (2011) Kim Hermans et al. JOURNAL OF MICROBIOLOGICAL METHODS
- RT-qPCR based quantitative analysis of gene expression in single bacterial cells
- (2011) Weimin Gao et al. JOURNAL OF MICROBIOLOGICAL METHODS
- Microbial environments confound antibiotic efficacy
- (2011) Henry H Lee et al. Nature Chemical Biology
- Measuring single-cell gene expression dynamics in bacteria using fluorescence time-lapse microscopy
- (2011) Jonathan W Young et al. Nature Protocols
- Spatial structure increases the waiting time for cancer
- (2011) Erik A Martens et al. NEW JOURNAL OF PHYSICS
- An Information Theoretic, Microfluidic-Based Single Cell Analysis Permits Identification of Subpopulations among Putatively Homogeneous Stem Cells
- (2011) Jason P. Glotzbach et al. PLoS One
- On the spontaneous stochastic dynamics of a single gene: complexity of the molecular interplay at the promoter
- (2010) Antoine Coulon et al. BMC Systems Biology
- Ecological succession in long-term experimentally evolved biofilms produces synergistic communities
- (2010) Steffen R Poltak et al. ISME Journal
- Functional roles for noise in genetic circuits
- (2010) Avigdor Eldar et al. NATURE
- The role of physiological heterogeneity in microbial population behavior
- (2010) Mary E Lidstrom et al. Nature Chemical Biology
- Noise Can Induce Bimodality in Positive Transcriptional Feedback Loops Without Bistability
- (2010) T.-L. To et al. SCIENCE
- The transcriptional programme of Salmonella enterica serovar Typhimurium reveals a key role for tryptophan metabolism in biofilms
- (2009) Shea Hamilton et al. BMC GENOMICS
- Stochastic gene expression as a molecular switch for viral latency
- (2009) Abhyudai Singh et al. CURRENT OPINION IN MICROBIOLOGY
- Novel persistence genes inPseudomonas aeruginosaidentified by high-throughput screening
- (2009) Valerie N. De Groote et al. FEMS MICROBIOLOGY LETTERS
- Simultaneous assay of every Salmonella Typhi gene using one million transposon mutants
- (2009) G. C. Langridge et al. GENOME RESEARCH
- mRNA-Seq whole-transcriptome analysis of a single cell
- (2009) Fuchou Tang et al. NATURE METHODS
- Localized Gene Expression in Pseudomonas aeruginosa Biofilms
- (2008) A. P. Lenz et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Nature, Nurture, or Chance: Stochastic Gene Expression and Its Consequences
- (2008) Arjun Raj et al. CELL
- Selection to minimise noise in living systems and its implications for the evolution of gene expression
- (2008) Ben Lehner Molecular Systems Biology
- Self-destructive cooperation mediated by phenotypic noise
- (2008) Martin Ackermann et al. NATURE
- Imaging individual mRNA molecules using multiple singly labeled probes
- (2008) Arjun Raj et al. NATURE METHODS
- Physiological heterogeneity in biofilms
- (2008) Philip S. Stewart et al. NATURE REVIEWS MICROBIOLOGY
Become a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get StartedAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started