Physiological and biotechnological implications of transcript-level variation under abiotic stress

Patterns of population epigenomic diversity

(2013) Robert J. Schmitz et al.   NATURE

Transcriptome Responses to Combinations of Stresses in Arabidopsis

(2013) S. Rasmussen et al.   PLANT PHYSIOLOGY

Deciphering and Prediction of Transcriptome Dynamics under Fluctuating Field Conditions

(2012) Atsushi J. Nagano et al.   CELL

Plant tolerance to drought and salinity: stress regulating transcription factors and their functional significance in the cellular transcriptional network

(2011) Dortje Golldack et al.   PLANT CELL REPORTS

Comparative Functional Genomics of Salt Stress in Related Model and Cultivated Plants Identifies and Overcomes Limitations to Translational Genomics

(2011) Diego H. Sanchez et al.   PLoS One

Genomic Analysis of QTLs and Genes Altering Natural Variation in Stochastic Noise

(2011) Jose M. Jimenez-Gomez et al.   PLoS Genetics

Common and distinct organ and stress responsive transcriptomic patterns in Oryza sativa and Arabidopsis thaliana

(2010) Reena Narsai et al.   BMC PLANT BIOLOGY

Small RNAs are on the move

(2010) Daniel H. Chitwood et al.   NATURE

Time of day shapes Arabidopsis drought transcriptomes

(2010) Olivia Wilkins et al.   PLANT JOURNAL

Arabidopsis Plants Acclimate to Water Deficit at Low Cost through Changes of Carbon Usage: An Integrated Perspective Using Growth, Metabolite, Enzyme, and Gene Expression Analysis

(2010) Irène Hummel et al.   PLANT PHYSIOLOGY

Molecular Basis of Plant Cold Acclimation: Insights Gained from Studying the CBF Cold Response Pathway

(2010) M. F. Thomashow   PLANT PHYSIOLOGY

Natural Genetic Variation in Selected Populations of Arabidopsis thaliana Is Associated with Ionomic Differences

(2010) Elizabeth Buescher et al.   PLoS One

Comparing genomic expression patterns across plant species reveals highly diverged transcriptional dynamics in response to salt stress

(2009) Harkamal Walia et al.   BMC GENOMICS

cis-Regulatory elements in plant cell signaling

(2009) Henry D Priest et al.   CURRENT OPINION IN PLANT BIOLOGY

Epigenetic regulation of stress responses in plants

(2009) Viswanathan Chinnusamy et al.   CURRENT OPINION IN PLANT BIOLOGY

Complementary regulation of four Eucalyptus CBF genes under various cold conditions

(2009) M. Navarro et al.   JOURNAL OF EXPERIMENTAL BOTANY

System-wide molecular evidence for phenotypic buffering in Arabidopsis

(2009) Jingyuan Fu et al.   NATURE GENETICS

Analysis of the salt-stress response at cell-type resolution

(2009) JOSÉ R. DINNENY   PLANT CELL AND ENVIRONMENT

Making the most of drought and salinity transcriptomics

(2009) MICHAEL K. DEYHOLOS   PLANT CELL AND ENVIRONMENT

Mining for robust transcriptional and metabolic responses to long-term salt stress: a case study on the model legumeLotus japonicus

(2009) DIEGO H. SANCHEZ et al.   PLANT CELL AND ENVIRONMENT

Genotype and time of day shape thePopulusdrought response

(2009) Olivia Wilkins et al.   PLANT JOURNAL

Leaf proteome analysis of eightPopulus ×euramericanagenotypes: Genetic variation in drought response and in water-use efficiency involves photosynthesis-related proteins

(2009) Ludovic Bonhomme et al.   PROTEOMICS

Quantitative Genomics: Analyzing Intraspecific Variation Using Global Gene Expression Polymorphisms or eQTLs

(2008) Dan Kliebenstein   Annual Review of Plant Biology

The balance of reproducibility, sensitivity, and specificity of lists of differentially expressed genes in microarray studies

(2008) Leming Shi et al.   BMC BIOINFORMATICS

Connecting Genes, Coexpression Modules, and Molecular Signatures to Environmental Stress Phenotypes in Plants

(2008) David J Weston et al.   BMC Systems Biology

Nature, Nurture, or Chance: Stochastic Gene Expression and Its Consequences

(2008) Arjun Raj et al.   CELL

The relationship of drought-related gene expression in Arabidopsis thaliana to hormonal and environmental factors

(2008) Daiqing Huang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Multilevel genomic analysis of the response of transcripts, enzyme activities and metabolites in Arabidopsis rosettes to a progressive decrease of temperature in the non-freezing range

(2008) BJÖRN USADEL et al.   PLANT CELL AND ENVIRONMENT

Arabidopsistranscript and metabolite profiles: ecotype-specific responses to open-air elevated [CO2]

(2008) PINGHUA LI et al.   PLANT CELL AND ENVIRONMENT

Disruption of the Arabidopsis Circadian Clock Is Responsible for Extensive Variation in the Cold-Responsive Transcriptome

(2008) Z. Bieniawska et al.   PLANT PHYSIOLOGY

Quantitative Trait Loci and Crop Performance under Abiotic Stress: Where Do We Stand?

(2008) N. C. Collins et al.   PLANT PHYSIOLOGY