A Trihelix DNA Binding Protein Counterbalances Hypoxia-Responsive Transcriptional Activation in Arabidopsis

Nitric Oxide Sensing in Plants Is Mediated by Proteolytic Control of Group VII ERF Transcription Factors

(2014) Daniel J. Gibbs et al.   MOLECULAR CELL

Plant cysteine oxidases control the oxygen-dependent branch of the N-end-rule pathway

(2014) Daan A. Weits et al.   Nature Communications

Translational dynamics revealed by genome-wide profiling of ribosome footprints in Arabidopsis

(2013) P. Juntawong et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Molecular elements of low-oxygen signaling in plants

(2012) Francesco Licausi   PHYSIOLOGIA PLANTARUM

Misexpression of a Chloroplast Aspartyl Protease Leads to Severe Growth Defects and Alters Carbohydrate Metabolism in Arabidopsis

(2012) E. Paparelli et al.   PLANT PHYSIOLOGY

Hypoxia Triggers Meiotic Fate Acquisition in Maize

(2012) T. Kelliher et al.   SCIENCE

The trihelix family of transcription factors – light, stress and development

(2012) Ruth N. Kaplan-Levy et al.   TRENDS IN PLANT SCIENCE

Making sense of low oxygen sensing

(2012) Julia Bailey-Serres et al.   TRENDS IN PLANT SCIENCE

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Oxygen sensing in plants is mediated by an N-end rule pathway for protein destabilization

(2011) Francesco Licausi et al.   NATURE

Homeostatic response to hypoxia is regulated by the N-end rule pathway in plants

(2011) Daniel J. Gibbs et al.   NATURE

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

Molecular characterization of the submergence response of the Arabidopsis thaliana ecotype Columbia

(2011) Seung Cho Lee et al.   NEW PHYTOLOGIST

Towards Establishment of a Rice Stress Response Interactome

(2011) Young-Su Seo et al.   PLoS Genetics

ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data

(2010) Lihua J Zhu et al.   BMC BIOINFORMATICS

Temporal Dynamics in Soil Oxygen and Greenhouse Gases in Two Humid Tropical Forests

(2010) Daniel Liptzin et al.   ECOSYSTEMS

Chromatin immunoprecipitation (ChIP) of plant transcription factors followed by sequencing (ChIP-SEQ) or hybridization to whole genome arrays (ChIP-CHIP)

(2010) Kerstin Kaufmann et al.   Nature Protocols

Natural variation of submergence tolerance among Arabidopsis thaliana accessions

(2010) D. Vashisht et al.   NEW PHYTOLOGIST

Hypoxia responsive gene expression is mediated by various subsets of transcription factors and miRNAs that are determined by the actual oxygen availability

(2010) Francesco Licausi et al.   NEW PHYTOLOGIST

PlantTFDB 2.0: update and improvement of the comprehensive plant transcription factor database

(2010) He Zhang et al.   NUCLEIC ACIDS RESEARCH

HRE1 and HRE2, two hypoxia-inducible ethylene response factors, affect anaerobic responses in Arabidopsis thaliana

(2010) Francesco Licausi et al.   PLANT JOURNAL

Cross-Kingdom Comparison of Transcriptomic Adjustments to Low-Oxygen Stress Highlights Conserved and Plant-Specific Responses

(2010) A. Mustroph et al.   PLANT PHYSIOLOGY

ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data

(2009) M. Morgan et al.   BIOINFORMATICS

Profiling translatomes of discrete cell populations resolves altered cellular priorities during hypoxia in Arabidopsis

(2009) A. Mustroph et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Flooding Stress: Acclimations and Genetic Diversity

(2008) J. Bailey-Serres et al.   Annual Review of Plant Biology

Analyzing real-time PCR data by the comparative CT method

(2008) Thomas D Schmittgen et al.   Nature Protocols

Selective mRNA translation coordinates energetic and metabolic adjustments to cellular oxygen deprivation and reoxygenation inArabidopsis thaliana

(2008) Cristina Branco-Price et al.   PLANT JOURNAL

Regulation of Respiration and Fermentation to Control the Plant Internal Oxygen Concentration

(2008) A. Zabalza et al.   PLANT PHYSIOLOGY

Improved plant transformation vectors for fluorescent protein tagging

(2008) Silin Zhong et al.   TRANSGENIC RESEARCH

Model-based Analysis of ChIP-Seq (MACS)

(2008) Yong Zhang et al.   GENOME BIOLOGY