Transcriptomic analysis of submergence-tolerant and sensitive Brachypodium distachyon ecotypes reveals oxidative stress as a major tolerance factor
Published 2016 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Transcriptomic analysis of submergence-tolerant and sensitive Brachypodium distachyon ecotypes reveals oxidative stress as a major tolerance factor
Authors
Keywords
-
Journal
Scientific Reports
Volume 6, Issue 1, Pages -
Publisher
Springer Nature
Online
2016-06-10
DOI
10.1038/srep27686
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Oxygen Sensing and Signaling
- (2015) Joost T. van Dongen et al. Annual Review of Plant Biology
- Core clock,SUB1, andABARgenes mediate flooding and drought responses via alternative splicing in soybean
- (2015) Naeem H. Syed et al. JOURNAL OF EXPERIMENTAL BOTANY
- Flood adaptive traits and processes: an overview
- (2015) Laurentius A. C. J. Voesenek et al. NEW PHYTOLOGIST
- Enhanced waterlogging tolerance in barley by manipulation of expression of the N-end rule pathway E3 ligase PROTEOLYSIS6
- (2015) Guillermina M. Mendiondo et al. PLANT BIOTECHNOLOGY JOURNAL
- The low oxygen, oxidative and osmotic stress responses synergistically act through the ethylene response factor VII genesRAP2.12,RAP2.2andRAP2.3
- (2015) Csaba Papdi et al. PLANT JOURNAL
- Group VII Ethylene Response Factors Coordinate Oxygen and Nitric Oxide Signal Transduction and Stress Responses in Plants
- (2015) Daniel J. Gibbs et al. PLANT PHYSIOLOGY
- Ethylene-Mediated Regulation of A2-Type CYCLINs Modulates Hyponastic Growth in Arabidopsis
- (2015) Joanna K. Polko et al. PLANT PHYSIOLOGY
- Constitutively expressed ERF-VII transcription factors redundantly activate the core anaerobic response in Arabidopsis thaliana
- (2015) Liem T. Bui et al. PLANT SCIENCE
- Improvement of enzymatic saccharification yield inArabidopsis thalianaby ectopic expression of the riceSUB1A-1transcription factor
- (2015) Lizeth Núñez-López et al. PeerJ
- A trehalose-6-phosphate phosphatase enhances anaerobic germination tolerance in rice
- (2015) Tobias Kretzschmar et al. Nature Plants
- Genetic and Molecular Characterization of Submergence Response Identifies Subtol6 as a Major Submergence Tolerance Locus in Maize
- (2015) Malachy T. Campbell et al. PLoS One
- HTSeq--a Python framework to work with high-throughput sequencing data
- (2014) S. Anders et al. BIOINFORMATICS
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- Nitric Oxide Sensing in Plants Is Mediated by Proteolytic Control of Group VII ERF Transcription Factors
- (2014) Daniel J. Gibbs et al. MOLECULAR CELL
- Efficient use of energy in anoxia-tolerant plants with focus on germinating rice seedlings
- (2014) Brian J. Atwell et al. NEW PHYTOLOGIST
- Photoperiodic Control of Carbon Distribution during the Floral Transition in Arabidopsis
- (2014) M. I. Ortiz-Marchena et al. PLANT CELL
- Arabidopsis acyl-CoA-binding protein ACBP3 participates in plant response to hypoxia by modulating very-long-chain fatty acid metabolism
- (2014) Li-Juan Xie et al. PLANT JOURNAL
- A Secreted Protein with Plant-Specific Cysteine-Rich Motif Functions as a Mannose-Binding Lectin That Exhibits Antifungal Activity
- (2014) T. Miyakawa et al. PLANT PHYSIOLOGY
- Plant cysteine oxidases control the oxygen-dependent branch of the N-end-rule pathway
- (2014) Daan A. Weits et al. Nature Communications
- A Trihelix DNA Binding Protein Counterbalances Hypoxia-Responsive Transcriptional Activation in Arabidopsis
- (2014) Beatrice Giuntoli et al. PLOS BIOLOGY
- Adaptive Responses of Sugarcane to Waterlogging Stress: An Over View
- (2014) R. Gomathi et al. Sugar Tech
- Alternative Oxidase: A Mitochondrial Respiratory Pathway to Maintain Metabolic and Signaling Homeostasis during Abiotic and Biotic Stress in Plants
- (2013) Greg Vanlerberghe INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0
- (2013) Koichiro Tamura et al. MOLECULAR BIOLOGY AND EVOLUTION
- Two Rumex Species from Contrasting Hydrological Niches Regulate Flooding Tolerance through Distinct Mechanisms
- (2013) H. van Veen et al. PLANT CELL
- Submergence Confers Immunity Mediated by the WRKY22 Transcription Factor in Arabidopsis
- (2013) F.-C. Hsu et al. PLANT CELL
- Root Transcript Profiling of Two Rorippa Species Reveals Gene Clusters Associated with Extreme Submergence Tolerance
- (2013) R. Sasidharan et al. PLANT PHYSIOLOGY
- Translational dynamics revealed by genome-wide profiling of ribosome footprints in Arabidopsis
- (2013) P. Juntawong et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Quiescence in rice submergence tolerance: an evolutionary hypothesis
- (2013) Chiara Pucciariello et al. TRENDS IN PLANT SCIENCE
- Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon
- (2013) Dong-Hoon Jeong et al. GENOME BIOLOGY
- Inhibition of aconitase by nitric oxide leads to induction of the alternative oxidase and to a shift of metabolism towards biosynthesis of amino acids
- (2012) Kapuganti J. Gupta et al. JOURNAL OF EXPERIMENTAL BOTANY
- Comparison of GC-MS and NMR for Metabolite Profiling of Rice Subjected to Submergence Stress
- (2012) Gregory A. Barding et al. JOURNAL OF PROTEOME RESEARCH
- SUB1A-dependent and -independent mechanisms are involved in the flooding tolerance of wild rice species
- (2012) Raj Kumar Niroula et al. PLANT JOURNAL
- The Submergence Tolerance Gene SUB1A Delays Leaf Senescence under Prolonged Darkness through Hormonal Regulation in Rice
- (2012) T. Fukao et al. PLANT PHYSIOLOGY
- Waterproofing Crops: Effective Flooding Survival Strategies
- (2012) J. Bailey-Serres et al. PLANT PHYSIOLOGY
- Non-symbiotic haemoglobins—What's happening beyond nitric oxide scavenging?
- (2012) Robert D. Hill AoB Plants
- Differential Metabolic Regulation Governed by the Rice SUB1A Gene during Submergence Stress and Identification of Alanylglycine by 1H NMR Spectroscopy
- (2011) Gregory A. Barding et al. JOURNAL OF PROTEOME RESEARCH
- Oxygen sensing in plants is mediated by an N-end rule pathway for protein destabilization
- (2011) Francesco Licausi et al. NATURE
- Homeostatic response to hypoxia is regulated by the N-end rule pathway in plants
- (2011) Daniel J. Gibbs et al. NATURE
- Comparative analysis between plant species of transcriptional and metabolic responses to hypoxia
- (2011) Reena Narsai et al. NEW PHYTOLOGIST
- Molecular characterization of the submergence response of the Arabidopsis thaliana ecotype Columbia
- (2011) Seung Cho Lee et al. NEW PHYTOLOGIST
- The Submergence Tolerance Regulator SUB1A Mediates Crosstalk between Submergence and Drought Tolerance in Rice
- (2011) Takeshi Fukao et al. PLANT CELL
- Expression of rice SUB1A and SUB1C transcription factors in Arabidopsis uncovers flowering inhibition as a submergence tolerance mechanism
- (2011) Julián M. Peña-Castro et al. PLANT JOURNAL
- Natural Variation of Flowering Time and Vernalization Responsiveness in Brachypodium distachyon
- (2010) Christopher J. Schwartz et al. BioEnergy Research
- Transcriptional regulation of the CRK/DUF26 group of Receptor-like protein kinases by ozone and plant hormones in Arabidopsis
- (2010) Michael Wrzaczek et al. BMC PLANT BIOLOGY
- On the Relevance and Control of Leaf Angle
- (2010) M. van Zanten et al. CRITICAL REVIEWS IN PLANT SCIENCES
- The mitochondrial protein frataxin is essential for heme biosynthesis in plants
- (2010) María V. Maliandi et al. FEBS Journal
- Genome sequencing and analysis of the model grass Brachypodium distachyon
- (2010) John P. Vogel et al. NATURE
- Natural variation of submergence tolerance among Arabidopsis thaliana accessions
- (2010) D. Vashisht et al. NEW PHYTOLOGIST
- Natural variation of drought response in Brachypodium distachyon
- (2010) Na Luo et al. PHYSIOLOGIA PLANTARUM
- HRE1 and HRE2, two hypoxia-inducible ethylene response factors, affect anaerobic responses in Arabidopsis thaliana
- (2010) Francesco Licausi et al. PLANT JOURNAL
- The Submergence Tolerance Regulator Sub1A Mediates Stress-Responsive Expression of AP2/ERF Transcription Factors
- (2010) K.-H. Jung et al. PLANT PHYSIOLOGY
- Cross-Kingdom Comparison of Transcriptomic Adjustments to Low-Oxygen Stress Highlights Conserved and Plant-Specific Responses
- (2010) A. Mustroph et al. PLANT PHYSIOLOGY
- Comparative Genomics of Flowering Time Pathways Using Brachypodium distachyon as a Model for the Temperate Grasses
- (2010) Janet A. Higgins et al. PLoS One
- Submergence Tolerant Rice: SUB1’s Journey from Landrace to Modern Cultivar
- (2010) Julia Bailey-Serres et al. Rice
- The ethylene response factors SNORKEL1 and SNORKEL2 allow rice to adapt to deep water
- (2009) Yoko Hattori et al. NATURE
- MEME SUITE: tools for motif discovery and searching
- (2009) T. L. Bailey et al. NUCLEIC ACIDS RESEARCH
- Evolutionary analysis of the Sub1 gene cluster that confers submergence tolerance to domesticated rice
- (2008) Takeshi Fukao et al. ANNALS OF BOTANY
- Review of wheat improvement for waterlogging tolerance in Australia and India: the importance of anaerobiosis and element toxicities associated with different soils
- (2008) T. L. Setter et al. ANNALS OF BOTANY
- Development of submergence-tolerant rice cultivars: the Sub1 locus and beyond
- (2008) Endang M. Septiningsih et al. ANNALS OF BOTANY
- Stakeholders’ views in reducing rural vulnerability to natural disasters in Southern Mexico: Hazard exposure and coping and adaptive capacity
- (2008) Sergio O. Saldaña-Zorrilla GLOBAL ENVIRONMENTAL CHANGE-HUMAN AND POLICY DIMENSIONS
- Selective mRNA translation coordinates energetic and metabolic adjustments to cellular oxygen deprivation and reoxygenation inArabidopsis thaliana
- (2008) Cristina Branco-Price et al. PLANT JOURNAL
- Submergence tolerance conferred by Sub1A is mediated by SLR1 and SLRL1 restriction of gibberellin responses in rice
- (2008) T. Fukao et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Add your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload NowAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started