Rice SUB1A constrains remodelling of the transcriptome and metabolome during submergence to facilitate post-submergence recovery

A Tale of Two Sugars: Trehalose 6-Phosphate and Sucrose

(2016) Carlos M. Figueroa et al.   PLANT PHYSIOLOGY

Flood adaptive traits and processes: an overview

(2015) Laurentius A. C. J. Voesenek et al.   NEW PHYTOLOGIST

The key regulator of submergence tolerance, SUB1A , promotes photosynthetic and metabolic recovery from submergence damage in rice leaves

(2015) Jasper Benedict Alpuerto et al.   PLANT CELL AND ENVIRONMENT

Regulation of Primary Metabolism in Response to Low Oxygen Availability as Revealed by Carbon and Nitrogen Isotope Redistribution

(2015) Carla António et al.   PLANT PHYSIOLOGY

Living to Die and Dying to Live: The Survival Strategy behind Leaf Senescence

(2015) Jos H.M. Schippers et al.   PLANT PHYSIOLOGY

A trehalose-6-phosphate phosphatase enhances anaerobic germination tolerance in rice

(2015) Tobias Kretzschmar et al.   Nature Plants

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Gas film retention and underwater photosynthesis during field submergence of four contrasting rice genotypes

(2014) Anders Winkel et al.   JOURNAL OF EXPERIMENTAL BOTANY

Stress-Induced Chloroplast Degradation inArabidopsisIs Regulated via a Process Independent of Autophagy and Senescence-Associated Vacuoles

(2014) Songhu Wang et al.   PLANT CELL

Physiological basis of tolerance to complete submergence in rice involves genetic factors in addition to the SUB1 gene

(2014) Sudhanshu Singh et al.   AoB Plants

Trehalose-6-phosphate and SnRK1 kinases in plant development and signaling: the emerging picture

(2014) Allen Y.-L. Tsai et al.   Frontiers in Plant Science

The Regulation of Brassinosteroid Biosynthesis in Arabidopsis

(2013) Yuhee Chung et al.   CRITICAL REVIEWS IN PLANT SCIENCES

SUB1A-mediated submergence tolerance response in rice involves differential regulation of the brassinosteroid pathway

(2013) Aaron J. Schmitz et al.   NEW PHYTOLOGIST

Global flood risk under climate change

(2013) Yukiko Hirabayashi et al.   Nature Climate Change

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Determination of trehalose-6-phosphate in Arabidopsis thaliana seedlings by hydrophilic-interaction liquid chromatography–mass spectrometry

(2012) Javier Sastre Toraño et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Time is on our side: the importance of considering a recovery period when assessing flooding tolerance in plants

(2012) Gustavo Gabriel Striker   ECOLOGICAL RESEARCH

De-submergence responses of antioxidative defense systems in two wetland plants having escape and quiescence strategies

(2012) Fang-Li Luo et al.   JOURNAL OF PLANT PHYSIOLOGY

Comparison of GC-MS and NMR for Metabolite Profiling of Rice Subjected to Submergence Stress

(2012) Gregory A. Barding et al.   JOURNAL OF PROTEOME RESEARCH

How Do Sugars Regulate Plant Growth and Development? New Insight into the Role of Trehalose-6-Phosphate

(2012) Liam E. O’Hara et al.   Molecular Plant

The Submergence Tolerance Gene SUB1A Delays Leaf Senescence under Prolonged Darkness through Hormonal Regulation in Rice

(2012) T. Fukao et al.   PLANT PHYSIOLOGY

Differential Metabolic Regulation Governed by the Rice SUB1A Gene during Submergence Stress and Identification of Alanylglycine by 1H NMR Spectroscopy

(2011) Gregory A. Barding et al.   JOURNAL OF PROTEOME RESEARCH

Molecular characterization of the submergence response of the Arabidopsis thaliana ecotype Columbia

(2011) Seung Cho Lee et al.   NEW PHYTOLOGIST

The Submergence Tolerance Regulator SUB1A Mediates Crosstalk between Submergence and Drought Tolerance in Rice

(2011) Takeshi Fukao et al.   PLANT CELL

Analysis of trehalose-6-phosphate synthase (TPS) gene family suggests the formation of TPS complexes in rice

(2011) Baisheng Zang et al.   PLANT MOLECULAR BIOLOGY

Recovery dynamics of growth, photosynthesis and carbohydrate accumulation after de-submergence: a comparison between two wetland plants showing escape and quiescence strategies

(2010) Fang-Li Luo et al.   ANNALS OF BOTANY

Desiccation of leaves after de-submergence is one cause for intolerance to complete submergence of the rice cultivar IR 42

(2010) Timothy L. Setter et al.   FUNCTIONAL PLANT BIOLOGY

The Submergence Tolerance Regulator Sub1A Mediates Stress-Responsive Expression of AP2/ERF Transcription Factors

(2010) K.-H. Jung et al.   PLANT PHYSIOLOGY

Cross-Kingdom Comparison of Transcriptomic Adjustments to Low-Oxygen Stress Highlights Conserved and Plant-Specific Responses

(2010) A. Mustroph et al.   PLANT PHYSIOLOGY

Trehalose and plant stress responses: friend or foe?

(2010) Olivier Fernandez et al.   TRENDS IN PLANT SCIENCE

Submergence Tolerant Rice: SUB1’s Journey from Landrace to Modern Cultivar

(2010) Julia Bailey-Serres et al.   Rice

Determination of trehalose-6-phosphate in Arabidopsis seedlings by successive extractions followed by anion exchange chromatography–mass spectrometry

(2009) Thierry L. Delatte et al.   ANALYTICAL BIOCHEMISTRY

Distinction and characterisation of submergence tolerant and sensitive rice cultivars, probed by the fluorescence OJIP rise kinetics

(2009) Ramani Kumar Sarkar et al.   FUNCTIONAL PLANT BIOLOGY

The ethylene response factors SNORKEL1 and SNORKEL2 allow rice to adapt to deep water

(2009) Yoko Hattori et al.   NATURE

Coordinated Responses to Oxygen and Sugar Deficiency Allow Rice Seedlings to Tolerate Flooding

(2009) K.-W. Lee et al.   Science Signaling

High quality metabolomic data for Chlamydomonas reinhardtii

(2008) Do Lee et al.   Plant Methods

Submergence tolerance conferred by Sub1A is mediated by SLR1 and SLRL1 restriction of gibberellin responses in rice

(2008) T. Fukao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Chlorophyll fluorescence parameters, CO2 photosynthetic rate and regeneration capacity as a result of complete submergence and subsequent re-emergence in rice (Oryza sativa L.)

(2007) Debabrata Panda et al.   AQUATIC BOTANY