Hit-and-run transcriptional control by bZIP1 mediates rapid nutrient signaling in Arabidopsis

LRH-1 Governs Vital Transcriptional Programs in Endocrine-Sensitive and -Resistant Breast Cancer Cells

(2014) S. Bianco et al.   CANCER RESEARCH

Mapping Yeast Transcriptional Networks

(2013) T. R. Hughes et al.   GENETICS

TARGET: A Transient Transformation System for Genome-Wide Transcription Factor Target Discovery

(2013) Bastiaan O.R. Bargmann et al.   Molecular Plant

New Insights into Aluminum Tolerance in Rice: The ASR5 Protein Binds the STAR1 Promoter and Other Aluminum-Responsive Genes

(2013) Rafael Augusto Arenhart et al.   Molecular Plant

Arabidopsis NIN-like transcription factors have a central role in nitrate signalling

(2013) Mineko Konishi et al.   Nature Communications

Nuclear retention of the transcription factor NLP7 orchestrates the early response to nitrate in plants

(2013) Chloé Marchive et al.   Nature Communications

Temporal transcriptional response to ethylene gas drives growth hormone cross-regulation in Arabidopsis

(2013) Katherine Noelani Chang et al.   eLife

Unraveling the KNOTTED1 regulatory network in maize meristems

(2012) N. Bolduc et al.   GENES & DEVELOPMENT

The TAGteam motif facilitates binding of 21 sequence-specific transcription factors in the Drosophila embryo

(2012) R. Satija et al.   GENOME RESEARCH

Genome-wide protein–DNA binding dynamics suggest a molecular clutch for transcription factor function

(2012) Colin R. Lickwar et al.   NATURE

Systematic evaluation of factors influencing ChIP-seq fidelity

(2012) Yiwen Chen et al.   NATURE METHODS

Toward the identification and regulation of the Arabidopsis thaliana ABI3 regulon

(2012) Gudrun Mönke et al.   NUCLEIC ACIDS RESEARCH

Animal Transcription Networks as Highly Connected, Quantitative Continua

(2011) Mark D. Biggin   DEVELOPMENTAL CELL

Profiling of the BRCA1 transcriptome through microarray and ChIP-chip analysis

(2011) Julia J. Gorski et al.   NUCLEIC ACIDS RESEARCH

Heterodimers of theArabidopsisTranscription Factors bZIP1 and bZIP53 Reprogram Amino Acid Metabolism during Low Energy Stress

(2011) Katrin Dietrich et al.   PLANT CELL

Rapid, Organ-Specific Transcriptional Responses to Light Regulate Photomorphogenic Development in Dicot Seedlings

(2011) Y. Li et al.   PLANT PHYSIOLOGY

Pioneer factors: directing transcriptional regulators within the chromatin environment

(2011) Luca Magnani et al.   TRENDS IN GENETICS

Predictive network modeling of the high-resolution dynamic plant transcriptome in response to nitrate

(2011) Gabriel Krouk et al.   GENOME BIOLOGY

What does biologically meaningful mean? A perspective on gene regulatory network validation

(2011) Albertha JM Walhout   GENOME BIOLOGY

Modeling the global effect of the basic-leucine zipper transcription factor 1 (bZIP1) on nitrogen and light regulation in Arabidopsis

(2010) Mariana Obertello et al.   BMC Systems Biology

The Arabidopsis bZIP1 Transcription Factor Is Involved in Sugar Signaling, Protein Networking, and DNA Binding

(2010) Shin Gene Kang et al.   Molecular Plant

AGRIS: the Arabidopsis Gene Regulatory Information Server, an update

(2010) A. Yilmaz et al.   NUCLEIC ACIDS RESEARCH

The Arabidopsis thaliana STYLISH1 Protein Acts as a Transcriptional Activator Regulating Auxin Biosynthesis

(2010) D. M. Eklund et al.   PLANT CELL

Dynamic and complex transcription factor binding during an inducible response in yeast

(2009) L. Ni et al.   GENES & DEVELOPMENT

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

Members of the LBD Family of Transcription Factors Repress Anthocyanin Synthesis and Affect Additional Nitrogen Responses in Arabidopsis

(2009) G. Rubin et al.   PLANT CELL

A Systems Approach Uncovers Restrictions for Signal Interactions Regulating Genome-wide Responses to Nutritional Cues in Arabidopsis

(2009) Gabriel Krouk et al.   PLoS Computational Biology

Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data

(2008) Anton Valouev et al.   NATURE METHODS

μChIP—a rapid micro chromatin immunoprecipitation assay for small cell samples and biopsies

(2008) John Arne Dahl et al.   NUCLEIC ACIDS RESEARCH

Systems approach identifies an organic nitrogen-responsive gene network that is regulated by the master clock control gene CCA1

(2008) R. A. Gutierrez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cell-specific nitrogen responses mediate developmental plasticity

(2008) M. L. Gifford et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA