Firefly genomes illuminate parallel origins of bioluminescence in beetles

Brazilian Bioluminescent Beetles: Reflections on Catching Glimpses of Light in the Atlantic Forest and Cerrado

(2018) ETELVINO J.H. BECHARA et al.   ANAIS DA ACADEMIA BRASILEIRA DE CIENCIAS

Minimap2: pairwise alignment for nucleotide sequences

(2018) Heng Li   BIOINFORMATICS

2- S -cysteinylhydroquinone is an intermediate for the firefly luciferin biosynthesis that occurs in the pupal stage of the Japanese firefly, Luciola lateralis

(2018) Shusei Kanie et al.   BIOORGANIC CHEMISTRY

Incomplete sclerotization and phylogeny: The phylogenetic classification of Plastocerus (Coleoptera: Elateroidea)

(2018) Ladislav Bocak et al.   PLoS One

Genome Size in North American Fireflies: Substantial Variation Likely Driven by Neutral Processes

(2017) Sarah Sander Lower et al.   Genome Biology and Evolution

Variation in DNA Methylation Is Not Consistently Reflected by Sociality in Hymenoptera

(2017) Karl M. Glastad et al.   Genome Biology and Evolution

Hybrid assembly of the large and highly repetitive genome ofAegilops tauschii, a progenitor of bread wheat, with the MaSuRCA mega-reads algorithm

(2017) Aleksey V. Zimin et al.   GENOME RESEARCH

Direct determination of diploid genome sequences

(2017) Neil I. Weisenfeld et al.   GENOME RESEARCH

Canu: scalable and accurate long-read assembly via adaptivek-mer weighting and repeat separation

(2017) Sergey Koren et al.   GENOME RESEARCH

Basic amino acids in the N-terminal half of the PB2 subunit of influenza virus RNA polymerase are involved in both transcription and replication

(2017) Koyu Hara et al.   JOURNAL OF GENERAL VIROLOGY

Identification and characterization of the Luc2-type luciferase in the Japanese firefly, Luciola parvula , involved in a dim luminescence in immobile stages

(2017) Manabu Bessho-Uehara et al.   LUMINESCENCE

Total evidence phylogeny and the evolution of adult bioluminescence in fireflies (Coleoptera: Lampyridae)

(2017) Gavin J. Martin et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

A rhodopsin in the brain functions in circadian photoentrainment in Drosophila

(2017) Jinfei D. Ni et al.   NATURE

Single-molecule sequencing and chromatin conformation capture enable de novo reference assembly of the domestic goat genome

(2017) Derek M Bickhart et al.   NATURE GENETICS

Differential analysis of RNA-seq incorporating quantification uncertainty

(2017) Harold Pimentel et al.   NATURE METHODS

Anin vitrofluorescence based study of initiation of RNA synthesis by influenza B polymerase

(2017) Stefan Reich et al.   NUCLEIC ACIDS RESEARCH

20 years of the SMART protein domain annotation resource

(2017) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Biochemical characteristics and gene expression profiles of two paralogous luciferases from the Japanese firefly Pyrocoelia atripennis (Coleoptera, Lampyridae, Lampyrinae): insight into the evolution of firefly luciferase genes

(2017) Manabu Bessho-Uehara et al.   PHOTOCHEMICAL & PHOTOBIOLOGICAL SCIENCES

Influenza A virus cap-snatches host RNAs based on their abundance early after infection

(2017) Dorota Sikora et al.   VIROLOGY

Structural insights into RNA synthesis by the influenza virus transcription-replication machine

(2017) Alexander Pflug et al.   VIRUS RESEARCH

Viruses as vectors of horizontal transfer of genetic material in eukaryotes

(2017) Clément Gilbert et al.   Current Opinion in Virology

A novel twelve class fluctuation test reveals higher than expected mutation rates for influenza A viruses

(2017) Matthew D Pauly et al.   eLife

Nonretroviral integrated RNA viruses in arthropod vectors: an occasional event or something more?

(2017) Ken E Olson et al.   Current Opinion in Insect Science

Long-read sequence assembly of the firefly Pyrocoelia pectoralis genome

(2017) Xinhua Fu et al.   GigaScience

The complete mitochondrial genome sequence and phylogenetic analysis of Luciola lateralis, one of the most famous firefly in Japan (Coleoptera: Lampyridae)

(2017) Juri Maeda et al.   Mitochondrial DNA Part B-Resources

shinyheatmap: Ultra fast low memory heatmap web interface for big data genomics

(2017) Bohdan B. Khomtchouk et al.   PLoS One

Drosophila melanogaster rhodopsin Rh7 is a UV-to-visible light sensor with an extraordinarily broad absorption spectrum

(2017) Kazumi Sakai et al.   Scientific Reports

Sulfoluciferin is Biosynthesized by a Specialized Luciferin Sulfotransferase in Fireflies

(2016) Timothy R. Fallon et al.   BIOCHEMISTRY

plasmidSPAdes: assembling plasmids from whole genome sequencing data

(2016) Dmitry Antipov et al.   BIOINFORMATICS

Commensal Viruses of Mosquitoes: Host Restriction, Transmission, and Interaction with Arboviral Pathogens

(2016) Roy A. Hall et al.   Evolutionary Bioinformatics

Conservation, Duplication, and Divergence of Five Opsin Genes in Insect Evolution

(2016) Roberto Feuda et al.   Genome Biology and Evolution

Evolution of DNA Methylation across Insects

(2016) Adam J. Bewick et al.   MOLECULAR BIOLOGY AND EVOLUTION

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Near-optimal probabilistic RNA-seq quantification

(2016) Nicolas L Bray et al.   NATURE BIOTECHNOLOGY

Influenza virus RNA polymerase: insights into the mechanisms of viral RNA synthesis

(2016) Aartjan J. W. te Velthuis et al.   NATURE REVIEWS MICROBIOLOGY

OrthoDB v9.1: cataloging evolutionary and functional annotations for animal, fungal, plant, archaeal, bacterial and viral orthologs

(2016) Evgeny M. Zdobnov et al.   NUCLEIC ACIDS RESEARCH

CDD/SPARCLE: functional classification of proteins via subfamily domain architectures

(2016) Aron Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

Redundans: an assembly pipeline for highly heterozygous genomes

(2016) Leszek P. Pryszcz et al.   NUCLEIC ACIDS RESEARCH

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

(2016) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Cloning of the Blue Ghost (Phausis reticulata) Luciferase Reveals a Glowing Source of Green Light

(2016) Bruce R. Branchini et al.   PHOTOCHEMISTRY AND PHOTOBIOLOGY

No evidence for extensive horizontal gene transfer in the genome of the tardigradeHypsibius dujardini

(2016) Georgios Koutsovoulos et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Virus-derived DNA drives mosquito vector tolerance to arboviral infection

(2016) Bertsy Goic et al.   Nature Communications

Molecular characterization of firefly nuptial gifts: a multi-omics approach sheds light on postcopulatory sexual selection

(2016) Nooria Al-Wathiqui et al.   Scientific Reports

PIWIs Go Viral: Arbovirus-Derived piRNAs in Vector Mosquitoes

(2016) Pascal Miesen et al.   PLoS Pathogens

Juicer Provides a One-Click System for Analyzing Loop-Resolution Hi-C Experiments

(2016) Neva C. Durand et al.   Cell Systems

Juicebox Provides a Visualization System for Hi-C Contact Maps with Unlimited Zoom

(2016) Neva C. Durand et al.   Cell Systems

SeqKit: A Cross-Platform and Ultrafast Toolkit for FASTA/Q File Manipulation

(2016) Wei Shen et al.   PLoS One

One-pot non-enzymatic formation of firefly luciferin in a neutral buffer from p-benzoquinone and cysteine

(2016) Shusei Kanie et al.   Scientific Reports

The caste- and sex-specific DNA methylome of the termite Zootermopsis nevadensis

(2016) Karl M. Glastad et al.   Scientific Reports

The chemical defenses of millipedes (diplopoda): Biochemistry, physiology and ecology

(2015) William A. Shear   BIOCHEMICAL SYSTEMATICS AND ECOLOGY

NxTrim: optimized trimming of Illumina mate pair reads: Table 1.

(2015) Jared O’Connell et al.   BIOINFORMATICS

Bandage: interactive visualization ofde novogenome assemblies: Fig. 1.

(2015) Ryan R. Wick et al.   BIOINFORMATICS

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

InteractiVenn: a web-based tool for the analysis of sets through Venn diagrams

(2015) Henry Heberle et al.   BMC BIOINFORMATICS

Flash signal evolution inPhotinusfireflies: Character displacement and signal exploitation in a visual communication system

(2015) Kathrin F. Stanger-Hall et al.   EVOLUTION

The Genome and Methylome of a Beetle with Complex Social Behavior,Nicrophorus vespilloides(Coleoptera: Silphidae)

(2015) Christopher B. Cunningham et al.   Genome Biology and Evolution

Less Is More: An Adaptive Branch-Site Random Effects Model for Efficient Detection of Episodic Diversifying Selection

(2015) Martin D. Smith et al.   MOLECULAR BIOLOGY AND EVOLUTION

Variation in opsin genes correlates with signalling ecology in North American fireflies

(2015) S. E. Sander et al.   MOLECULAR ECOLOGY

Human body epigenome maps reveal noncanonical DNA methylation variation

(2015) Matthew D. Schultz et al.   NATURE

Crystal structure of the RNA-dependent RNA polymerase from influenza C virus

(2015) Narin Hengrung et al.   NATURE

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

(2015) Mihaela Pertea et al.   NATURE BIOTECHNOLOGY

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

MethylC-seq library preparation for base-resolution whole-genome bisulfite sequencing

(2015) Mark A Urich et al.   Nature Protocols

The Pfam protein families database: towards a more sustainable future

(2015) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Review of the firefly visual system (Coleoptera: Lampyridae) and evolution of the opsin genes underlying color vision

(2015) Gavin J. Martin et al.   ORGANISMS DIVERSITY & EVOLUTION

The beetle tree of life reveals that Coleoptera survived end-Permian mass extinction to diversify during the Cretaceous terrestrial revolution

(2015) DUANE D. MCKENNA et al.   SYSTEMATIC ENTOMOLOGY

Endogenous viruses: Connecting recent and ancient viral evolution

(2015) Pakorn Aiewsakun et al.   VIROLOGY

Malalcahuello ocaresi gen. & sp. n. (Elateridae, Campyloxeninae)

(2015) Elizabeth Arias-Bohart   ZooKeys

Nucleocytoplasmic transport of nucleocapsid proteins of enveloped RNA viruses

(2015) Wahyu N. Wulan et al.   Frontiers in Microbiology

Comparative paleovirological analysis of crustaceans identifies multiple widespread viral groups

(2015) Gabriel Metegnier et al.   Mobile DNA

Simple Method for Fluorescence DNA In Situ Hybridization to Squashed Chromosomes

(2015) Amanda M. Larracuente et al.   Jove-Journal of Visualized Experiments

LINKS: Scalable, alignment-free scaffolding of draft genomes with long reads

(2015) René L. Warren et al.   GigaScience

Endophytic and epiphytic microbes as “sources” of bioactive agents

(2015) David J. Newman et al.   Frontiers in Chemistry

Bona Fide Evidence for Natural Vertical Transmission of Infectious Salmon Anemia Virus in Freshwater Brood Stocks of Farmed Atlantic Salmon (Salmo salar) in Southern Chile

(2014) S. H. Marshall et al.   JOURNAL OF VIROLOGY

Discovery and Evolution of Bunyavirids in Arctic Phantom Midges and Ancient Bunyavirid-Like Sequences in Insect Genomes

(2014) M. J. Ballinger et al.   JOURNAL OF VIROLOGY

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

At the centre: influenza A virus ribonucleoproteins

(2014) Amie J. Eisfeld et al.   NATURE REVIEWS MICROBIOLOGY

The i5k Workspace@NAL—enabling genomic data access, visualization and curation of arthropod genomes

(2014) Monica Poelchau et al.   NUCLEIC ACIDS RESEARCH

SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information

(2014) Marco Biasini et al.   NUCLEIC ACIDS RESEARCH

Biosynthesis of Firefly Luciferin in Adult Lantern: Decarboxylation of ʟ-Cysteine is a Key Step for Benzothiazole Ring Formation in Firefly Luciferin Synthesis

(2014) Yuichi Oba et al.   PLoS One

Comparative Structural and Functional Analysis of Orthomyxovirus Polymerase Cap-Snatching Domains

(2014) Delphine Guilligay et al.   PLoS One

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

(2014) Bruce J. Walker et al.   PLoS One

PNAS Plus: From the Cover: Predictable transcriptome evolution in the convergent and complex bioluminescent organs of squid

(2014) M. S. Pankey et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phylogenomics resolves the timing and pattern of insect evolution

(2014) B. Misof et al.   SCIENCE

Genomic Encyclopedia of Type Strains, Phase I: The one thousand microbial genomes (KMG-I) project

(2014) Nikos C. Kyrpides et al.   Standards in Genomic Sciences

Kraken: ultrafast metagenomic sequence classification using exact alignments

(2014) Derrick E Wood et al.   GENOME BIOLOGY

The MaSuRCA genome assembler

(2013) Aleksey V. Zimin et al.   BIOINFORMATICS

QUAST: quality assessment tool for genome assemblies

(2013) Alexey Gurevich et al.   BIOINFORMATICS

GenomeTools: A Comprehensive Software Library for Efficient Processing of Structured Genome Annotations

(2013) Gordon Gremme et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions

(2013) Joshua N Burton et al.   NATURE BIOTECHNOLOGY

RNA-mediated interference and reverse transcription control the persistence of RNA viruses in the insect model Drosophila

(2013) Bertsy Goic et al.   NATURE IMMUNOLOGY

The evolutionary paths towards complexity: a metabolic perspective

(2013) Jing-Ke Weng   NEW PHYTOLOGIST

Plant P450s as versatile drivers for evolution of species-specific chemical diversity

(2013) B. Hamberger et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Origins of P450 diversity

(2013) H. Sezutsu et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Bioluminescence of a firefly pupa: involvement of a luciferase isotype in the dim glow of pupae and eggs in the Japanese firefly, Luciola lateralis

(2013) Yuichi Oba et al.   PHOTOCHEMICAL & PHOTOBIOLOGICAL SCIENCES

Isolation of a Novel Swine Influenza Virus from Oklahoma in 2011 Which Is Distantly Related to Human Influenza C Viruses

(2013) Ben M. Hause et al.   PLoS Pathogens

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

Genomic organization, evolution, and expression of photoprotein and opsin genes in Mnemiopsis leidyi: a new view of ctenophore photocytes

(2012) Christine E Schnitzler et al.   BMC BIOLOGY

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

(2012) H. Thorvaldsdottir et al.   BRIEFINGS IN BIOINFORMATICS

Thieves in the Night: Kleptoparasitism by Fireflies in the GenusPhoturisDejean (Coleoptera: Lampyridae)

(2012) Lynn Faust et al.   COLEOPTERISTS BULLETIN

Age constraint on Burmese amber based on U–Pb dating of zircons

(2012) Guanghai Shi et al.   CRETACEOUS RESEARCH

Tropism and Infectivity of Influenza Virus, Including Highly Pathogenic Avian H5N1 Virus, in Ferret Tracheal Differentiated Primary Epithelial Cell Cultures

(2012) H. Zeng et al.   JOURNAL OF VIROLOGY

Phylogenetically informative rearrangements in mitochondrial genomes of Coleoptera, and monophyly of aquatic elateriform beetles (Dryopoidea)

(2012) Martijn J.T.N. Timmermans et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

A cross-platform toolkit for mass spectrometry and proteomics

(2012) Matthew C Chambers et al.   NATURE BIOTECHNOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Reversible switching between epigenetic states in honeybee behavioral subcastes

(2012) Brian R Herb et al.   NATURE NEUROSCIENCE

Endogenous viruses: insights into viral evolution and impact on host biology

(2012) Cédric Feschotte et al.   NATURE REVIEWS GENETICS

Mind the Gap: Upgrading Genomes with Pacific Biosciences RS Long-Read Sequencing Technology

(2012) Adam C. English et al.   PLoS One

Dendroscope 3: An Interactive Tool for Rooted Phylogenetic Trees and Networks

(2012) Daniel H. Huson et al.   SYSTEMATIC BIOLOGY

‘Leveling’ the playing field for analyses of single-base resolution DNA methylomes

(2012) Matthew D. Schultz et al.   TRENDS IN GENETICS

A fast, lock-free approach for efficient parallel counting of occurrences of k-mers

(2011) Guillaume Marçais et al.   BIOINFORMATICS

MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects

(2011) Carson Holt et al.   BMC BIOINFORMATICS

Firefly luciferase genes from the subfamilies Psilocladinae and Ototretinae (Lampyridae, Coleoptera)

(2011) Yuichi Oba et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY B-BIOCHEMISTRY & MOLECULAR BIOLOGY

Kakusan4 and Aminosan: two programs for comparing nonpartitioned, proportional and separate models for combined molecular phylogenetic analyses of multilocus sequence data

(2011) AKIFUMI S. TANABE   Molecular Ecology Resources

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

ELM--the database of eukaryotic linear motifs

(2011) H. Dinkel et al.   NUCLEIC ACIDS RESEARCH

A new blue-shifted luciferase from the Brazilian Amydetes fanestratus (Coleoptera: Lampyridae) firefly: molecular evolution and structural/functional properties

(2011) Vadim R. Viviani et al.   PHOTOCHEMICAL & PHOTOBIOLOGICAL SCIENCES

A Photocytes-Associated Fatty Acid-Binding Protein from the Light Organ of Adult Taiwanese Firefly, Luciola cerata

(2011) King-Siang Goh et al.   PLoS One

Shedding new light on opsin evolution

(2011) M. L. Porter et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The phylogeny and limits of Elateridae (Insecta, Coleoptera): is there a common tendency of click beetles to soft-bodiedness and neoteny?

(2011) Robin Kundrata et al.   ZOOLOGICA SCRIPTA

Identification and Characterization of a Luciferase Isotype in the Japanese Firefly,Luciola cruciata, Involving in the Dim Glow of Firefly Eggs

(2010) Yuichi Oba et al.   BIOCHEMISTRY

Circoletto: visualizing sequence similarity with Circos

(2010) N. Darzentas   BIOINFORMATICS

MZmine 2: Modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data

(2010) Tomáš Pluskal et al.   BMC BIOINFORMATICS

CYP18A1, a key enzyme of Drosophila steroid hormone inactivation, is essential for metamorphosis

(2010) Emilie Guittard et al.   DEVELOPMENTAL BIOLOGY

Life cycle of the aquatic firefly Luciola ficta (Coleoptera: Lampyridae)

(2010) Jen-Zon Ho et al.   JOURNAL OF ASIA-PACIFIC ENTOMOLOGY

Single base–resolution methylome of the silkworm reveals a sparse epigenomic map

(2010) Hui Xiang et al.   NATURE BIOTECHNOLOGY

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

MITE-Hunter: a program for discovering miniature inverted-repeat transposable elements from genomic sequences

(2010) Y. Han et al.   NUCLEIC ACIDS RESEARCH

Why barcode? High-throughput multiplex sequencing of mitochondrial genomes for molecular systematics

(2010) M. J. T. N. Timmermans et al.   NUCLEIC ACIDS RESEARCH

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

High-quality draft assemblies of mammalian genomes from massively parallel sequence data

(2010) S. Gnerre et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Endogenous Viral Elements in Animal Genomes

(2010) Aris Katzourakis et al.   PLoS Genetics

First Fossil Click Beetles from the Middle Jurassic of Inner Mongolia, China (Coleoptera: Elateridae)

(2009) Huali Chang et al.   ANNALES ZOOLOGICI

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

INTERGENIC EXCHANGE, GEOGRAPHIC ISOLATION, AND THE EVOLUTION OF BIOLUMINESCENT COLOR FORPYROPHORUSCLICK BEETLES

(2009) Jeffrey L. Feder et al.   EVOLUTION

Characterization of luciferases and its paralogue in the Panamanian luminous click beetle Pyrophorus angustus: A click beetle luciferase lacks the fatty acyl-CoA synthetic activity

(2009) Yuichi Oba et al.   GENE

JBrowse: A next-generation genome browser

(2009) M. E. Skinner et al.   GENOME RESEARCH

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

Estimates of US influenza-associated deaths made using four different methods

(2009) William W. Thompson et al.   Influenza and Other Respiratory Viruses

Quaranfil, Johnston Atoll, and Lake Chad Viruses Are Novel Members of the Family Orthomyxoviridae

(2009) R. M. Presti et al.   JOURNAL OF VIROLOGY

Molecular insights on the evolution of the lateral and head lantern luciferases and bioluminescence colors in Mastinocerini railroad-worms (Coleoptera: Phengodidae)

(2009) Frederico G. C. Arnoldi et al.   PHOTOCHEMICAL & PHOTOBIOLOGICAL SCIENCES

Evidence for light perception in a bioluminescent organ

(2009) D. Tong et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome

(2009) E. Lieberman-Aiden et al.   SCIENCE

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

SIRIUS: decomposing isotope patterns for metabolite identification†

(2008) Sebastian Böcker et al.   BIOINFORMATICS

ALLPATHS: De novo assembly of whole-genome shotgun microreads

(2008) J. Butler et al.   GENOME RESEARCH

An Improved General Amino Acid Replacement Matrix

(2008) S. Q. Le et al.   MOLECULAR BIOLOGY AND EVOLUTION

The genome of the model beetle and pest Tribolium castaneum

(2008) Stephen Richards et al.   NATURE

Firefly luminescence: A historical perspective and recent developments

(2008) Hugo Fraga   PHOTOCHEMICAL & PHOTOBIOLOGICAL SCIENCES

A defensive steroidal pyrone in the Glow-worm Lampyris noctiluca L. (Coleoptera: Lampyridae)

(2008) JOHN TYLER et al.   PHYSIOLOGICAL ENTOMOLOGY

Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

(2008) Brian J Haas et al.   GENOME BIOLOGY

Flash Signal Evolution, Mate Choice, and Predation in Fireflies

(2007) Sara M. Lewis et al.   Annual Review of Entomology