Why barcode? High-throughput multiplex sequencing of mitochondrial genomes for molecular systematics

Complete mitogenome sequence of the jewel beetle,Chrysochroa fulgidissima(Coleoptera: Buprestidae)

(2013) Mee Yeon Hong et al.   Mitochondrial DNA

Index-Free De Novo Assembly and Deconvolution of Mixed Mitochondrial Genomes

(2010) B. J. McComish et al.   Genome Biology and Evolution

Ribosomal protein genes of holometabolan insects reject the Halteria, instead revealing a close affinity of Strepsiptera with Coleoptera

(2010) Stuart J. Longhorn et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Nucleotide substitution rates for the full set of mitochondrial protein-coding genes in Coleoptera

(2010) Joan Pons et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

When phylogenetic assumptions are violated: base compositional heterogeneity and among-site rate variation in beetle mitochondrial phylogenomics

(2010) HOJUN SONG et al.   SYSTEMATIC ENTOMOLOGY

Tablet--next generation sequence assembly visualization

(2009) I. Milne et al.   BIOINFORMATICS

PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating

(2009) Nicolas Lartillot et al.   BIOINFORMATICS

Increasing phylogenetic resolution at low taxonomic levels using massively parallel sequencing of chloroplast genomes

(2009) Matthew Parks et al.   BMC BIOLOGY

DNA Sudoku--harnessing high-throughput sequencing for multiplexed specimen analysis

(2009) Y. Erlich et al.   GENOME RESEARCH

Complete mitochondrial genome sequence of the yellow-spotted long-horned beetle Psacothea hilaris (Coleoptera: Cerambycidae) and phylogenetic analysis among coleopteran insects

(2009) Ki-Gyoung Kim et al.   MOLECULES AND CELLS

Combinatorics and next-generation sequencing

(2009) Nick Patterson et al.   NATURE BIOTECHNOLOGY

An integrated pipeline for next-generation sequencing and annotation of mitochondrial genomes

(2009) A. R. Jex et al.   NUCLEIC ACIDS RESEARCH

Assessing the root of bilaterian animals with scalable phylogenomic methods

(2009) A. Hejnol et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Nonstationary Evolution and Compositional Heterogeneity in Beetle Mitochondrial Phylogenomics

(2009) Nathan C. Sheffield et al.   SYSTEMATIC BIOLOGY

Next-Generation DNA Sequencing Methods

(2008) Elaine R. Mardis   Annual Review of Genomics and Human Genetics

Using 454 technology for long-PCR based sequencing of the complete mitochondrial genome from single Haemonchus contortus (Nematoda)

(2008) Aaron R Jex et al.   BMC GENOMICS

EagleView: A genome assembly viewer for next-generation sequencing technologies

(2008) W. Huang et al.   GENOME RESEARCH

jModelTest: Phylogenetic Model Averaging

(2008) D. Posada   MOLECULAR BIOLOGY AND EVOLUTION

A Comparative Analysis of Mitochondrial Genomes in Coleoptera (Arthropoda: Insecta) and Genome Descriptions of Six New Beetles

(2008) N. C. Sheffield et al.   MOLECULAR BIOLOGY AND EVOLUTION

The phylogeny of Cetartiodactyla: The importance of dense taxon sampling, missing data, and the remarkable promise of cytochrome b to provide reliable species-level phylogenies

(2008) Ingi Agnarsson et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Multiplex sequencing of plant chloroplast genomes using Solexa sequencing-by-synthesis technology

(2008) Richard Cronn et al.   NUCLEIC ACIDS RESEARCH

Comparative Analysis of Human Gut Microbiota by Barcoded Pyrosequencing

(2008) Anders F. Andersson et al.   PLoS One

MetaSim—A Sequencing Simulator for Genomics and Metagenomics

(2008) Daniel C. Richter et al.   PLoS One