CD-HIT: accelerated for clustering the next-generation sequencing data

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Artificial and natural duplicates in pyrosequencing reads of metagenomic data

(2010) Beifang Niu et al.   BMC BIOINFORMATICS

A human gut microbial gene catalogue established by metagenomic sequencing

(2010) Junjie Qin et al.   NATURE

Community cyberinfrastructure for Advanced Microbial Ecology Research and Analysis: the CAMERA resource

(2010) S. Sun et al.   NUCLEIC ACIDS RESEARCH

Predicting disulfide bond connectivity in proteins by correlated mutations analysis

(2008) R. Rubinstein et al.   BIOINFORMATICS

Gene identification and protein classification in microbial metagenomic sequence data via incremental clustering

(2008) Shibu Yooseph et al.   BMC BIOINFORMATICS

A core gut microbiome in obese and lean twins

(2008) Peter J. Turnbaugh et al.   NATURE