PNAS Plus: From the Cover: Predictable transcriptome evolution in the convergent and complex bioluminescent organs of squid

Genomic basis for the convergent evolution of electric organs

(2014) J. R. Gallant et al.   SCIENCE

Identifying Hidden Rate Changes in the Evolution of a Binary Morphological Character: The Evolution of Plant Habit in Campanulid Angiosperms

(2013) Jeremy M. Beaulieu et al.   SYSTEMATIC BIOLOGY

Diversity and Partitioning of Bacterial Populations within the Accessory Nidamental Gland of the Squid Euprymna scolopes

(2012) Andrew J. Collins et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

A multi-gene phylogeny of Cephalopoda supports convergent morphological evolution in association with multiple habitat shifts in the marine environment

(2012) Annie R Lindgren et al.   BMC EVOLUTIONARY BIOLOGY

The genomic basis of adaptive evolution in threespine sticklebacks

(2012) Felicity C. Jones et al.   NATURE

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Convergent Evolution of Endometrial Prolactin Expression in Primates, Mice, and Elephants Through the Independent Recruitment of Transposable Elements

(2011) Deena Emera et al.   MOLECULAR BIOLOGY AND EVOLUTION

Transcriptomic analysis of avian digits reveals conserved and derived digit identities in birds

(2011) Zhe Wang et al.   NATURE

The evolution of gene expression levels in mammalian organs

(2011) David Brawand et al.   NATURE

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

optix Drives the Repeated Convergent Evolution of Butterfly Wing Pattern Mimicry

(2011) R. D. Reed et al.   SCIENCE

The hearing gene Prestin unites echolocating bats and whales

(2010) Ying Li et al.   CURRENT BIOLOGY

Within and between Whorls: Comparative Transcriptional Profiling of Aquilegia and Arabidopsis

(2010) Claudia Voelckel et al.   PLoS One

Gene cooption and convergent evolution of oxygen transport hemoglobins in jawed and jawless vertebrates

(2010) F. G. Hoffmann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

Bioluminescence in the Sea

(2009) Steven H.D. Haddock et al.   Annual Review of Marine Science

TagDust--a program to eliminate artifacts from next generation sequencing data

(2009) T. Lassmann et al.   BIOINFORMATICS

Evidence for light perception in a bioluminescent organ

(2009) D. Tong et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Distinct developmental mechanisms underlie the evolutionary diversification of Drosophila sex combs

(2009) K. Tanaka et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY