Dendroscope 3: An Interactive Tool for Rooted Phylogenetic Trees and Networks

NeXML: Rich, Extensible, and Verifiable Representation of Comparative Data and Metadata

(2012) Rutger A. Vos et al.   SYSTEMATIC BIOLOGY

Fast computation of minimum hybridization networks

(2011) Benjamin Albrecht et al.   BIOINFORMATICS

Tanglegrams for rooted phylogenetic trees and networks

(2011) C. Scornavacca et al.   BIOINFORMATICS

HybridNET: a tool for constructing hybridization networks

(2010) Zhi-Zhong Chen et al.   BIOINFORMATICS

Phylogenetic networks do not need to be complex: using fewer reticulations to represent conflicting clusters

(2010) Leo van Iersel et al.   BIOINFORMATICS

A Survey of Combinatorial Methods for Phylogenetic Networks

(2010) Daniel H. Huson et al.   Genome Biology and Evolution

PADRE: a package for analyzing and displaying reticulate evolution

(2009) Martin Lott et al.   BIOINFORMATICS

Computing galled networks from real data

(2009) D. H. Huson et al.   BIOINFORMATICS

Extended Newick: it is time for a standard representation of phylogenetic networks

(2009) Gabriel Cardona et al.   BMC BIOINFORMATICS

Drawing Rooted Phylogenetic Networks

(2009) D.H. Huson   IEEE-ACM Transactions on Computational Biology and Bioinformatics

On Nakhleh's Metric for Reduced Phylogenetic Networks

(2009) G. Cardona et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Comparison of Tree-Child Phylogenetic Networks

(2009) G. Cardona et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Reticulation, Data Combination, and Inferring Evolutionary History: An Example from Danthonioideae (Poaceae)

(2009) Michael D. Pirie et al.   SYSTEMATIC BIOLOGY

A perl package and an alignment tool for phylogenetic networks

(2008) Gabriel Cardona et al.   BMC BIOINFORMATICS

PhyloNet: a software package for analyzing and reconstructing reticulate evolutionary relationships

(2008) Cuong Than et al.   BMC BIOINFORMATICS

Hybridization in Nonbinary Trees

(2008) S. Linz et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics