LINKS: Scalable, alignment-free scaffolding of draft genomes with long reads
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Title
LINKS: Scalable, alignment-free scaffolding of draft genomes with long reads
Authors
Keywords
Nanopore sequencing, Scaffolding, Genome assembly, Next-generation sequencing, LINKS
Journal
GigaScience
Volume 4, Issue 1, Pages -
Publisher
Oxford University Press (OUP)
Online
2015-08-04
DOI
10.1186/s13742-015-0076-3
References
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- (2014) N. J. Loman et al. BIOINFORMATICS
- SSPACE-LongRead: scaffolding bacterial draft genomes using long read sequence information
- (2014) Marten Boetzer et al. BMC BIOINFORMATICS
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- (2014) Philip M Ashton et al. NATURE BIOTECHNOLOGY
- Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
- (2014) Bruce J. Walker et al. PLoS One
- A reference bacterial genome dataset generated on the MinION™ portable single-molecule nanopore sequencer
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- (2011) S. M. Kielbasa et al. GENOME RESEARCH
- Assemblathon 1: A competitive assessment of de novo short read assembly methods
- (2011) D. Earl et al. GENOME RESEARCH
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- (2011) David A. Rasko et al. NEW ENGLAND JOURNAL OF MEDICINE
- High-quality draft assemblies of mammalian genomes from massively parallel sequence data
- (2010) S. Gnerre et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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- (2009) J. T. Simpson et al. GENOME RESEARCH
- Continuous base identification for single-molecule nanopore DNA sequencing
- (2009) James Clarke et al. Nature Nanotechnology
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