The Impact of Genetic Changes during Crop Domestication

Targeted resequencing reveals genomic signatures of barley domestication

(2018) Artem Pankin et al.   NEW PHYTOLOGIST

INDEL variation in the regulatory region of the major flowering time gene LanFTc1 is associated with vernalization response and flowering time in narrow-leafed lupin (Lupinus angustifolius L.)

(2018) Candy M. Taylor et al.   PLANT CELL AND ENVIRONMENT

The effect of INDEHISCENT point mutations on silique shatter resistance in oilseed rape (Brassica napus)

(2018) Janina Braatz et al.   THEORETICAL AND APPLIED GENETICS

Ecology and genomics of an important crop wild relative as a prelude to agricultural innovation

(2018) Eric J.B. von Wettberg et al.   Nature Communications

The Sequenced Angiosperm Genomes and Genome Databases

(2018) Fei Chen et al.   Frontiers in Plant Science

Perennial Grain Legume Domestication Phase I: Criteria for Candidate Species Selection

(2018) Brandon Schlautman et al.   Sustainability

Cropping practices manipulate abundance patterns of root and soil microbiome members paving the way to smart farming

(2018) Kyle Hartman et al.   Microbiome

Carbon dioxide (CO 2 ) levels this century will alter the protein, micronutrients, and vitamin content of rice grains with potential health consequences for the poorest rice-dependent countries

(2018) Chunwu Zhu et al.   Science Advances

Shattering or not shattering: that is the question in domestication of rice (Oryza sativa L.)

(2017) Avik Ray et al.   GENETIC RESOURCES AND CROP EVOLUTION

Origin of rice (Oryza sativa L.) domestication genes

(2017) Peter Civáň et al.   GENETIC RESOURCES AND CROP EVOLUTION

Selection During Maize Domestication Targeted a Gene Network Controlling Plant and Inflorescence Architecture

(2017) Anthony J. Studer et al.   GENETICS

The Role of Non-Coding RNAs in Cytoplasmic Male Sterility in Flowering Plants

(2017) Helena Štorchová   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

The rice paradox: Multiple origins but single domestication in Asian rice

(2017) Jae Young Choi et al.   MOLECULAR BIOLOGY AND EVOLUTION

Whole-genome resequencing of 292 pigeonpea accessions identifies genomic regions associated with domestication and agronomic traits

(2017) Rajeev K Varshney et al.   NATURE GENETICS

Soybean domestication: the origin, genetic architecture and molecular bases

(2017) Eric J. Sedivy et al.   NEW PHYTOLOGIST

Co-ordinated Changes in the Accumulation of Metal Ions in Maize (Zea mays ssp. mays L.) in Response to Inoculation with the Arbuscular Mycorrhizal Fungus Funneliformis mosseae

(2017) M Rosario Ram�rez-Flores et al.   PLANT AND CELL PHYSIOLOGY

Genome editing as a tool to achieve the crop ideotype and de novo domestication of wild relatives: Case study in tomato

(2017) Agustin Zsögön et al.   PLANT SCIENCE

Assessing elements of an extended evolutionary synthesis for plant domestication and agricultural origin research

(2017) Dolores R. Piperno   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A transcriptome-SNP-derived linkage map of Apios americana (potato bean) provides insights about genome re-organization and synteny conservation in the phaseoloid legumes

(2017) Jugpreet Singh et al.   THEORETICAL AND APPLIED GENETICS

Near Eastern Plant Domestication: A History of Thought

(2017) Shahal Abbo et al.   TRENDS IN PLANT SCIENCE

Rapid Cycling Genomic Selection in a Multiparental Tropical Maize Population

(2017) Xuecai Zhang et al.   G3-Genes Genomes Genetics

Reproductive Strategies in Mediterranean Legumes: Trade-Offs between Phenology, Seed Size and Vigor within and between Wild and Domesticated Lupinus Species Collected along Aridity Gradients

(2017) Jens D. Berger et al.   Frontiers in Plant Science

Domestication Genomics of the Open-Pollinated Scarlet Runner Bean (Phaseolus coccineus L.)

(2017) Azalea Guerra-García et al.   Frontiers in Plant Science

Selection During Maize Domestication Targeted a Gene Network Controlling Plant and Inflorescence Architecture

(2017) Anthony J. Studer et al.   GENETICS

An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG IV

(2016)   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

1,135 Genomes Reveal the Global Pattern of Polymorphism in Arabidopsis thaliana

(2016) Carlos Alonso-Blanco et al.   CELL

Superheroes and masterminds of plant domestication

(2016) Natalia E. Martínez-Ainsworth et al.   COMPTES RENDUS BIOLOGIES

Within-and among-year germination in Sonoran Desert winter annuals: bet hedging and predictive germination in a variable environment

(2016) Jennifer R. Gremer et al.   ECOLOGY LETTERS

Subgenome parallel selection is associated with morphotype diversification and convergent crop domestication in Brassica rapa and Brassica oleracea

(2016) Feng Cheng et al.   NATURE GENETICS

The loss of vernalization requirement in narrow-leafed lupin is associated with a deletion in the promoter and de-repressed expression of a Flowering Locus T (FT ) homologue

(2016) Matthew N. Nelson et al.   NEW PHYTOLOGIST

The eco-evolutionary impacts of domestication and agricultural practices on wild species

(2016) Martin M. Turcotte et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Review: An integrated framework for crop adaptation to dry environments: Responses to transient and terminal drought

(2016) Jens Berger et al.   PLANT SCIENCE

Rootstocks: Diversity, Domestication, and Impacts on Shoot Phenotypes

(2016) Emily J. Warschefsky et al.   TRENDS IN PLANT SCIENCE

Genome-Enabled Prediction Models for Yield Related Traits in Chickpea

(2016) Manish Roorkiwal et al.   Frontiers in Plant Science

How Many Plant Species are There, Where are They, and at What Rate are They Going Extinct?

(2015) Stuart L. Pimm et al.   ANNALS OF THE MISSOURI BOTANICAL GARDEN

Age and Growth Patterns of Brazil Nut Trees (Bertholletia excelsaBonpl.) in Amazonia, Brazil

(2015) Jochen Schöngart et al.   BIOTROPICA

Structure and Function of the Bacterial Root Microbiota in Wild and Domesticated Barley

(2015) Davide Bulgarelli et al.   Cell Host & Microbe

From association to prediction: statistical methods for the dissection and selection of complex traits in plants

(2015) Alexander E Lipka et al.   CURRENT OPINION IN PLANT BIOLOGY

Patterns of genomic changes with crop domestication and breeding

(2015) Junpeng Shi et al.   CURRENT OPINION IN PLANT BIOLOGY

TaqSH1-D, wheat ortholog of rice seed shattering gene qSH1, maps to the interval of a rachis fragility QTL on chromosome 3DL of common wheat (Triticum aestivum)

(2015) Mazen Katkout et al.   GENETIC RESOURCES AND CROP EVOLUTION

Breeding crops for improved mineral nutrition under climate change conditions: Fig. 1.

(2015) David J. Pilbeam   JOURNAL OF EXPERIMENTAL BOTANY

Copy number variation at the GL7 locus contributes to grain size diversity in rice

(2015) Yuexing Wang et al.   NATURE GENETICS

Impact of plant domestication on rhizosphere microbiome assembly and functions

(2015) Juan E. Pérez-Jaramillo et al.   PLANT MOLECULAR BIOLOGY

Teosinte before domestication: Experimental study of growth and phenotypic variability in Late Pleistocene and early Holocene environments

(2015) Dolores R. Piperno et al.   QUATERNARY INTERNATIONAL

Whole genome re-sequencing of date palms yields insights into diversification of a fruit tree crop

(2015) Khaled M. Hazzouri et al.   Nature Communications

Identification of domestication-related loci associated with flowering time and seed size in soybean with the RAD-seq genotyping method

(2015) Ling Zhou et al.   Scientific Reports

A Genome-Wide Survey of Date Palm Cultivars Supports Two Major Subpopulations in Phoenix dactylifera

(2015) Lisa S. Mathew et al.   G3-Genes Genomes Genetics

Genetic control of flowering time in legumes

(2015) James L. Weller et al.   Frontiers in Plant Science

Back to the wilds: Tapping evolutionary adaptations for resilient crops through systematic hybridization with crop wild relatives

(2014) Emily Warschefsky et al.   AMERICAN JOURNAL OF BOTANY

Doubling down on genomes: Polyploidy and crop plants

(2014) Simon Renny-Byfield et al.   AMERICAN JOURNAL OF BOTANY

Root microbiome relates to plant host evolution in maize and other Poaceae

(2014) Marie-Lara Bouffaud et al.   ENVIRONMENTAL MICROBIOLOGY

Genetic diversity and association mapping of iron and zinc concentrations in chickpea (Cicer arietinum L.)

(2014) Marwan Diapari et al.   GENOME

Contrasting adaptive strategies to terminal drought-stress gradients in Mediterranean legumes: phenology, productivity, and water relations in wild and domesticated Lupinus luteus L.

(2014) J. D. Berger et al.   JOURNAL OF EXPERIMENTAL BOTANY

Increasing homogeneity in global food supplies and the implications for food security

(2014) C. K. Khoury et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Current perspectives and the future of domestication studies

(2014) G. Larson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Candidate gene analysis for determinacy in pigeonpea (Cajanus spp.)

(2014) Reyazul Rouf Mir et al.   THEORETICAL AND APPLIED GENETICS

Plant domestication versus crop evolution: a conceptual framework for cereals and grain legumes

(2014) Shahal Abbo et al.   TRENDS IN PLANT SCIENCE

Genomic selection: genome-wide prediction in plant improvement

(2014) Zeratsion Abera Desta et al.   TRENDS IN PLANT SCIENCE

Adapting Agriculture to Climate Change: A Global Initiative to Collect, Conserve, and Use Crop Wild Relatives

(2014) Hannes Dempewolf et al.   Agroecology and Sustainable Food Systems

Unraveling the plant microbiome: looking back and future perspectives

(2014) Gabriele Berg et al.   Frontiers in Microbiology

Genetic structure and domestication of carrot (Daucus carota subsp. sativus) (Apiaceae)

(2013) M. Iorizzo et al.   AMERICAN JOURNAL OF BOTANY

A Bountiful Harvest: Genomic Insights into Crop Domestication Phenotypes

(2013) Kenneth M. Olsen et al.   Annual Review of Plant Biology

Trends in Research using Plant Genetic Resources from Germplasm Collections: From 1996 to 2006

(2013) M. E. Dulloo et al.   CROP SCIENCE

THE LOCI OF REPEATED EVOLUTION: A CATALOG OF GENETIC HOTSPOTS OF PHENOTYPIC VARIATION

(2013) Arnaud Martin et al.   EVOLUTION

Cloning and Characterization of a Critical Regulator for Preharvest Sprouting in Wheat

(2013) S. Liu et al.   GENETICS

Evolution of crop species: genetics of domestication and diversification

(2013) Rachel S. Meyer et al.   NATURE REVIEWS GENETICS

Reticulated Origin of Domesticated Emmer Wheat Supports a Dynamic Model for the Emergence of Agriculture in the Fertile Crescent

(2013) Peter Civáň et al.   PLoS One

Comparative transcriptomics reveals patterns of selection in domesticated and wild tomato

(2013) D. Koenig et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The domestication and evolutionary ecology of apples

(2013) Amandine Cornille et al.   TRENDS IN GENETICS

Molecular mechanisms involved in convergent crop domestication

(2013) Teresa Lenser et al.   TRENDS IN PLANT SCIENCE

The essential role of genetic resources in narrow-leafed lupin improvement

(2013) Jens D. Berger et al.   Crop & Pasture Science

Grass pea (Lathyrus sativus): Is there a case for further crop improvement?

(2012) R. J. Hillocks et al.   EUPHYTICA

Defining the core Arabidopsis thaliana root microbiome

(2012) Derek S. Lundberg et al.   NATURE

Who's who in the plant root microbiome?

(2012) Penny R Hirsch et al.   NATURE BIOTECHNOLOGY

Parallel domestication of the Shattering1 genes in cereals

(2012) Zhongwei Lin et al.   NATURE GENETICS

Patterns and processes in crop domestication: an historical review and quantitative analysis of 203 global food crops

(2012) Rachel S. Meyer et al.   NEW PHYTOLOGIST

TheBrassica napusblackleg resistance geneLepR3encodes a receptor-like protein triggered by theLeptosphaeria maculanseffector AVRLM1

(2012) N. J. Larkan et al.   NEW PHYTOLOGIST

A multiparent advanced generation inter-cross population for genetic analysis in wheat

(2012) Bevan E. Huang et al.   PLANT BIOTECHNOLOGY JOURNAL

Reproductive Isolation during Domestication

(2012) H. Dempewolf et al.   PLANT CELL

Chromosome rearrangements during domestication of cucumber as revealed by high-density genetic mapping and draft genome assembly

(2012) Luming Yang et al.   PLANT JOURNAL

Reshaping of the maize transcriptome by domestication

(2012) R. Swanson-Wagner et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The common bean growth habit gene PvTFL1y is a functional homolog of Arabidopsis TFL1

(2012) S. L. Repinski et al.   THEORETICAL AND APPLIED GENETICS

From forest to field: Perennial fruit crop domestication

(2011) Allison J. Miller et al.   AMERICAN JOURNAL OF BOTANY

Microbially Mediated Plant Functional Traits

(2011) Maren L. Friesen et al.   Annual Review of Ecology Evolution and Systematics

Hybridisation of Australian chickpea cultivars with wild Cicer spp. increases resistance to root-lesion nematodes (Pratylenchus thornei and P. neglectus)

(2011) John P. Thompson et al.   AUSTRALASIAN PLANT PATHOLOGY

Chickpea evolution has selected for contrasting phenological mechanisms among different habitats

(2011) J. D. Berger et al.   EUPHYTICA

Tylosema esculentum(Marama) Tuber and Bean Extracts Are Strong Antiviral Agents against Rotavirus Infection

(2011) Walter Chingwaru et al.   Evidence-based Complementary and Alternative Medicine

How has narrow-leafed lupin changed in its 1st 40 years as an industrial, broad-acre crop? A G×E-based characterization of yield-related traits in Australian cultivars

(2011) J.D. Berger et al.   FIELD CROPS RESEARCH

Early agricultural pathways: moving outside the ‘core area’ hypothesis in Southwest Asia

(2011) Dorian Q. Fuller et al.   JOURNAL OF EXPERIMENTAL BOTANY

First off the mark: early seed germination

(2011) Karin Weitbrecht et al.   JOURNAL OF EXPERIMENTAL BOTANY

A transposon in tb1 drove maize domestication

(2011) Miltos Tsiantis   NATURE GENETICS

The potential of South African plants in the development of new medicinal products

(2011) B.-E. Van Wyk   SOUTH AFRICAN JOURNAL OF BOTANY

Domestication bottlenecks limit genetic diversity and constrain adaptation in narrow-leafed lupin (Lupinus angustifolius L.)

(2011) J. D. Berger et al.   THEORETICAL AND APPLIED GENETICS

Adaptation in the age of ecological genomics: insights from parallelism and convergence

(2011) Kathryn R. Elmer et al.   TRENDS IN ECOLOGY & EVOLUTION

Agricultural Origins: Centers and Noncenters; A Near Eastern Reappraisal

(2010) Shahal Abbo et al.   CRITICAL REVIEWS IN PLANT SCIENCES

The Role of Recently Derived FT Paralogs in Sunflower Domestication

(2010) Benjamin K. Blackman et al.   CURRENT BIOLOGY

Regulation of flowering in rice: two florigen genes, a complex gene network, and natural variation

(2010) Hiroyuki Tsuji et al.   CURRENT OPINION IN PLANT BIOLOGY

The opening of Pandora’s Box: climate change impacts on soil fertility and crop nutrition in developing countries

(2010) Samuel B. St.Clair et al.   PLANT AND SOIL

Phylogeny, phylogeography and genetic diversity of the Pisum genus

(2010) Petr Smýkal et al.   Plant Genetic Resources-Characterization and Utilization

Genetic perspectives on crop domestication

(2010) Briana L. Gross et al.   TRENDS IN PLANT SCIENCE

The genus Bauhinia s.l. (Leguminosae): a phylogeny based on the plastid trnL–trnF region

(2009) Carole Sinou et al.   Botany

Orphan legume crops enter the genomics era!

(2009) Rajeev K Varshney et al.   CURRENT OPINION IN PLANT BIOLOGY

Adapting genomics to study the evolution and ecology of agricultural systems

(2009) Maren L Friesen et al.   CURRENT OPINION IN PLANT BIOLOGY

The nature of selection during plant domestication

(2009) Michael D. Purugganan et al.   NATURE

What Has Natural Variation Taught Us about Plant Development, Physiology, and Adaptation?

(2009) C. Alonso-Blanco et al.   PLANT CELL

Tracking footprints of maize domestication and evidence for a massive selective sweep on chromosome 10

(2009) F. Tian et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A model for incorporating novel alleles from the primary gene pool into elite crop breeding programs while reselecting major genes for domestication or adaptation

(2009) W. A. Cowling et al.   Crop & Pasture Science

Resistance toPhytophthora medicaginisHansen and Maxwell in wildCicerspecies and its use in breeding root rot resistant chickpea (Cicer arietinumL.)

(2008) E. J. Knights et al.  

Evo-Devo and an Expanding Evolutionary Synthesis: A Genetic Theory of Morphological Evolution

(2008) Sean B. Carroll   CELL

Nonindependent Domestication of the Two Rice Subspecies, Oryza sativa ssp. indica and ssp. japonica , Demonstrated by Multilocus Microsatellites

(2008) Li-zhi Gao et al.   GENETICS

Genetic Design and Statistical Power of Nested Association Mapping in Maize

(2008) Jianming Yu et al.   GENETICS

Genetic approaches to crop improvement: responding to environmental and population changes

(2008) Shin Takeda et al.   NATURE REVIEWS GENETICS

The genetic expectations of a protracted model for the origins of domesticated crops

(2008) R. G. Allaby et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA