Cropping practices manipulate abundance patterns of root and soil microbiome members paving the way to smart farming
Published 2018 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Cropping practices manipulate abundance patterns of root and soil microbiome members paving the way to smart farming
Authors
Keywords
Soil and root microbiomes, Microbial co-occurrence, Network analysis, Cropping practices, Microbiota management, Smart farming
Journal
Microbiome
Volume 6, Issue 1, Pages -
Publisher
Springer Nature
Online
2018-01-16
DOI
10.1186/s40168-017-0389-9
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Research priorities for harnessing plant microbiomes in sustainable agriculture
- (2017) Posy E. Busby et al. PLOS BIOLOGY
- Deciphering composition and function of the root microbiome of a legume plant
- (2017) Kyle Hartman et al. Microbiome
- Cover crops support ecological intensification of arable cropping systems
- (2017) Raphaël A. Wittwer et al. Scientific Reports
- Responses of soil fungi to 5-year conservation tillage treatments in the drylands of northern China
- (2016) Ziting Wang et al. APPLIED SOIL ECOLOGY
- Geographic patterns of co-occurrence network topological features for soil microbiota at continental scale in eastern China
- (2016) Bin Ma et al. ISME Journal
- Network analysis reveals functional redundancy and keystone taxa amongst bacterial and fungal communities during organic matter decomposition in an arable soil
- (2016) Samiran Banerjee et al. SOIL BIOLOGY & BIOCHEMISTRY
- An Underground Revolution: Biodiversity and Soil Ecological Engineering for Agricultural Sustainability
- (2016) S. Franz Bender et al. TRENDS IN ECOLOGY & EVOLUTION
- Microbial Hub Taxa Link Host and Abiotic Factors to Plant Microbiome Variation
- (2016) Matthew T. Agler et al. PLOS BIOLOGY
- Networking in the Plant Microbiome
- (2016) Marcel G. A. van der Heijden et al. PLOS BIOLOGY
- Mineral vs. Organic Amendments: Microbial Community Structure, Activity and Abundance of Agriculturally Relevant Microbes Are Driven by Long-Term Fertilization Strategies
- (2016) Davide Francioli et al. Frontiers in Microbiology
- Structure and Function of the Bacterial Root Microbiota in Wild and Domesticated Barley
- (2015) Davide Bulgarelli et al. Cell Host & Microbe
- The core root microbiome of sugarcanes cultivated under varying nitrogen fertilizer application
- (2015) Yun Kit Yeoh et al. ENVIRONMENTAL MICROBIOLOGY
- The Plant Microbiome at Work
- (2015) Klaus Schlaeppi et al. MOLECULAR PLANT-MICROBE INTERACTIONS
- The importance of the microbiome of the plant holobiont
- (2015) Philippe Vandenkoornhuyse et al. NEW PHYTOLOGIST
- Structure, variation, and assembly of the root-associated microbiomes of rice
- (2015) Joseph Edwards et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Soil Microbiome Influences Grapevine-Associated Microbiota
- (2015) Iratxe Zarraonaindia et al. mBio
- Distinct soil microbial diversity under long-term organic and conventional farming
- (2014) Martin Hartmann et al. ISME Journal
- Plant host and soil origin influence fungal and bacterial assemblages in the roots of woody plants
- (2014) Gregory Bonito et al. MOLECULAR ECOLOGY
- Effects of long-term differential fertilization on eukaryotic microbial communities in an arable soil: a multiple barcoding approach
- (2014) Guillaume Lentendu et al. MOLECULAR ECOLOGY
- The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification
- (2014) T.B.K. Reddy et al. NUCLEIC ACIDS RESEARCH
- Effects of Manure Compost Application on Soil Microbial Community Diversity and Soil Microenvironments in a Temperate Cropland in China
- (2014) Zhen Zhen et al. PLoS One
- Deciphering microbial interactions and detecting keystone species with co-occurrence networks
- (2014) David Berry et al. Frontiers in Microbiology
- Structure and Functions of the Bacterial Microbiota of Plants
- (2013) Davide Bulgarelli et al. Annual Review of Plant Biology
- Newly Cultured Bacteria with Broad Diversity Isolated from Eight-Week Continuous Culture Enrichments of Cow Feces on Complex Polysaccharides
- (2013) Cherie J. Ziemer APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Rhizosphere microbiome assemblage is affected by plant development
- (2013) Jacqueline M Chaparro et al. ISME Journal
- Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences
- (2013) Morgan G I Langille et al. NATURE BIOTECHNOLOGY
- UPARSE: highly accurate OTU sequences from microbial amplicon reads
- (2013) Robert C Edgar NATURE METHODS
- Bacterial Communities Associated with the Leaves and the Roots of Arabidopsis thaliana
- (2013) Natacha Bodenhausen et al. PLoS One
- phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
- (2013) Paul J. McMurdie et al. PLoS One
- Diversity and heritability of the maize rhizosphere microbiome under field conditions
- (2013) J. A. Peiffer et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- New primers to amplify the fungal ITS2 region - evaluation by 454-sequencing of artificial and natural communities
- (2012) Katarina Ihrmark et al. FEMS MICROBIOLOGY ECOLOGY
- Changes in Bacterial Community Structure of Agricultural Land Due to Long-Term Organic and Chemical Amendments
- (2012) Vasvi Chaudhry et al. MICROBIAL ECOLOGY
- Defining the core Arabidopsis thaliana root microbiome
- (2012) Derek S. Lundberg et al. NATURE
- Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota
- (2012) Davide Bulgarelli et al. NATURE
- Microbial interactions: from networks to models
- (2012) Karoline Faust et al. NATURE REVIEWS MICROBIOLOGY
- The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
- (2012) Christian Quast et al. NUCLEIC ACIDS RESEARCH
- Ecological intensification: harnessing ecosystem services for food security
- (2012) Riccardo Bommarco et al. TRENDS IN ECOLOGY & EVOLUTION
- The rhizosphere microbiome and plant health
- (2012) Roeland L. Berendsen et al. TRENDS IN PLANT SCIENCE
- Fundamentals of Microbial Community Resistance and Resilience
- (2012) Ashley Shade et al. Frontiers in Microbiology
- Community Structures of Fecal Bacteria in Cattle from Different Animal Feeding Operations
- (2011) Orin C. Shanks et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- UCHIME improves sensitivity and speed of chimera detection
- (2011) Robert C. Edgar et al. BIOINFORMATICS
- Quality control and preprocessing of metagenomic datasets
- (2011) R. Schmieder et al. BIOINFORMATICS
- FLASH: fast length adjustment of short reads to improve genome assemblies
- (2011) T. Magoc et al. BIOINFORMATICS
- Environmental Impact of Different Agricultural Management Practices: Conventional vs. Organic Agriculture
- (2011) Tiziano Gomiero et al. CRITICAL REVIEWS IN PLANT SCIENCES
- Using network analysis to explore co-occurrence patterns in soil microbial communities
- (2011) Albert Barberán et al. ISME Journal
- Effects of organic amendment and tillage on soil microorganisms and microfauna
- (2010) Amy M. Treonis et al. APPLIED SOIL ECOLOGY
- Soil biota community structure and abundance under agricultural intensification and extensification
- (2010) Maria B. Postma-Blaauw et al. ECOLOGY
- QIIME allows analysis of high-throughput community sequencing data
- (2010) J Gregory Caporaso et al. NATURE METHODS
- The UNITE database for molecular identification of fungi - recent updates and future perspectives
- (2010) Kessy Abarenkov et al. NEW PHYTOLOGIST
- Improving indicator species analysis by combining groups of sites
- (2010) Miquel De Cáceres et al. OIKOS
- Pyrosequencing Assessment of Soil Microbial Communities in Organic and Conventional Potato Farms
- (2010) Akifumi Sugiyama et al. PLANT DISEASE
- Food Security: The Challenge of Feeding 9 Billion People
- (2010) H. C. J. Godfray et al. SCIENCE
- edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
- (2009) M. D. Robinson et al. BIOINFORMATICS
- Fungal community structure in soils of conventional and organic farming systems
- (2009) S. Schneider et al. Fungal Ecology
- Microbial community structure and its functional implications
- (2009) Jed A. Fuhrman NATURE
- The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems
- (2008) Marcel G. A. van der Heijden et al. ECOLOGY LETTERS
- The role of conservation agriculture in sustainable agriculture
- (2007) P. R Hobbs et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Differences in the composition and diversity of bacterial communities from agricultural and forest soils
- (2007) Rima Upchurch et al. SOIL BIOLOGY & BIOCHEMISTRY
Add your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload NowAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started