A transcriptome-SNP-derived linkage map of Apios americana (potato bean) provides insights about genome re-organization and synteny conservation in the phaseoloid legumes

Characterization and development mechanism of Apios americana tuber starch

(2016) Hanyu Yangcheng et al.   CARBOHYDRATE POLYMERS

Genomics-assisted characterization of a breeding collection of Apios americana, an edible tuberous legume

(2016) Vikas Belamkar et al.   Scientific Reports

Legume information system (LegumeInfo.org): a key component of a set of federated data resources for the legume family

(2015) Sudhansu Dash et al.   NUCLEIC ACIDS RESEARCH

Draft genome sequence of adzuki bean, Vigna angularis

(2015) Yang Jae Kang et al.   Scientific Reports

Ultra-high density intra-specific genetic linkage maps accelerate identification of functionally relevant molecular tags governing important agronomic traits in chickpea

(2015) Alice Kujur et al.   Scientific Reports

Using linkage maps to correct and scaffold de novo genome assemblies: methods, challenges, and computational tools

(2015) Janna L. Fierst   Frontiers in Genetics

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

A reference genome for common bean and genome-wide analysis of dual domestications

(2014) Jeremy Schmutz et al.   NATURE GENETICS

De Novo Assembly and Characterization of the Transcriptome of the Parasitic Weed Dodder Identifies Genes Associated with Plant Parasitism

(2014) A. Ranjan et al.   PLANT PHYSIOLOGY

New evidence of ancestral polyploidy in the Genistoid legume Lupinus angustifolius L. (narrow-leafed lupin)

(2014) Magdalena Kroc et al.   THEORETICAL AND APPLIED GENETICS

Genome sequence of mungbean and insights into evolution within Vigna species

(2014) Yang Jae Kang et al.   Nature Communications

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

De Novo Transcriptome Assembly in Chili Pepper (Capsicum frutescens) to Identify Genes Involved in the Biosynthesis of Capsaicinoids

(2013) Shaoqun Liu et al.   PLoS One

New reports of nuclear DNA content for 407 vascular plant taxa from the United States

(2012) Chengke Bai et al.   ANNALS OF BOTANY

Maize (Zea mays L.) Genome Diversity as Revealed by RNA-Sequencing

(2012) Candice N. Hansey et al.   PLoS One

Digital Gene Expression Analysis Based on Integrated De Novo Transcriptome Assembly of Sweet Potato [Ipomoea batatas (L.) Lam.]

(2012) Xiang Tao et al.   PLoS One

RNA-Seq Assembly – Are We There Yet?

(2012) Simon Schliesky et al.   Frontiers in Plant Science

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Wild melon diversity in India (Punjab State)

(2011) Anamika Roy et al.   GENETIC RESOURCES AND CROP EVOLUTION

Genome-wide genetic marker discovery and genotyping using next-generation sequencing

(2011) John W. Davey et al.   NATURE REVIEWS GENETICS

Phytozome: a comparative platform for green plant genomics

(2011) David M. Goodstein et al.   NUCLEIC ACIDS RESEARCH

Genome sequence of the palaeopolyploid soybean

(2010) Jeremy Schmutz et al.   NATURE

Relationships Among Phaseoloid Legumes Based on Sequences from Eight Chloroplast Regions

(2010) Saša Stefanović et al.   SYSTEMATIC BOTANY

Syntenic relationships among legumes revealed using a gene-based genetic linkage map of common bean (Phaseolus vulgaris L.)

(2010) Melody McConnell et al.   THEORETICAL AND APPLIED GENETICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

An analysis of synteny of Arachis with Lotus and Medicago sheds new light on the structure, stability and evolution of legume genomes.

(2009) David J Bertioli et al.   BMC GENOMICS

Phenotypic and molecular diversity among landraces of snapmelon ( Cucumis melo var. momordica) adapted to the hot and humid tropics of eastern India

(2009) N. P. S. Dhillon et al.   Plant Genetic Resources-Characterization and Utilization

A consensus genetic map of cowpea [Vigna unguiculata (L) Walp.] and synteny based on EST-derived SNPs

(2009) W. Muchero et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Whole-genome sequencing and variant discovery in C. elegans

(2008) LaDeana W Hillier et al.   NATURE METHODS

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

Efficient and Accurate Construction of Genetic Linkage Maps from the Minimum Spanning Tree of a Graph

(2008) Yonghui Wu et al.   PLoS Genetics