The genomics of local adaptation in trees: are we out of the woods yet?

Rapid Adaptation of a Polygenic Trait After a Sudden Environmental Shift

(2017) Kavita Jain et al.   GENETICS

Orthogonal Estimates of Variances for Additive, Dominance, and Epistatic Effects in Populations

(2017) Zulma G. Vitezica et al.   GENETICS

The Relationship between Selection, Network Connectivity, and Regulatory Variation within a Population of Capsella grandiflora

(2017) Emily B. Josephs et al.   Genome Biology and Evolution

Effects of Gene Action, Marker Density, and Timing of Selection on the Performance of Landscape Genomic Scans of Local Adaptation

(2017) Jeremy B Yoder et al.   JOURNAL OF HEREDITY

Contrasting Rates of Molecular Evolution and Patterns of Selection among Gymnosperms and Flowering Plants

(2017) Amanda R. De La Torre et al.   MOLECULAR BIOLOGY AND EVOLUTION

Advances in ecological genomics in forest trees and applications to genetic resources conservation and breeding

(2017) Jason A. Holliday et al.   MOLECULAR ECOLOGY

Water availability drives signatures of local adaptation in whitebark pine (Pinus albicaulis Engelm.) across fine spatial scales of the Lake Tahoe Basin, USA

(2017) Brandon M. Lind et al.   MOLECULAR ECOLOGY

RADseq provides unprecedented insights into molecular ecology and evolutionary genetics: comment on Breaking RAD by Lowry et al . (2016)

(2017) Garrett J. McKinney et al.   Molecular Ecology Resources

Unbroken: RADseq remains a powerful tool for understanding the genetics of adaptation in natural populations

(2017) Julian M. Catchen et al.   Molecular Ecology Resources

Responsible RAD: Striving for best practices in population genomic studies of adaptation

(2017) David B. Lowry et al.   Molecular Ecology Resources

Linkage disequilibrium–dependent architecture of human complex traits shows action of negative selection

(2017) Steven Gazal et al.   NATURE GENETICS

Genetic architecture: the shape of the genetic contribution to human traits and disease

(2017) Nicholas J. Timpson et al.   NATURE REVIEWS GENETICS

Network propagation: a universal amplifier of genetic associations

(2017) Lenore Cowen et al.   NATURE REVIEWS GENETICS

Identifying gene coexpression networks underlying the dynamic regulation of wood-forming tissues in Populus under diverse environmental conditions

(2017) Matthew Zinkgraf et al.   NEW PHYTOLOGIST

What can genome-wide association studies tell us about the evolutionary forces maintaining genetic variation for quantitative traits?

(2017) Emily B. Josephs et al.   NEW PHYTOLOGIST

Evolution of phenotypic plasticity in extreme environments

(2017) Luis-Miguel Chevin et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Network-based integration of systems genetics data reveals pathways associated with lignocellulosic biomass accumulation and processing

(2017) Eshchar Mizrachi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Expression profiling in Pinus radiata infected with Fusarium circinatum

(2017) Angela Carrasco et al.   Tree Genetics & Genomes

Genotype by environment interactions in forest tree breeding: review of methodology and perspectives on research and application

(2017) Yongjun Li et al.   Tree Genetics & Genomes

Gene co-expression network connectivity is an important determinant of selective constraint

(2017) Niklas Mähler et al.   PLoS Genetics

Rapid Adaptation of a Polygenic Trait After a Sudden Environmental Shift

(2017) Kavita Jain et al.   GENETICS

Orthogonal Estimates of Variances for Additive, Dominance, and Epistatic Effects in Populations

(2017) Zulma G. Vitezica et al.   GENETICS

Transitions between phases of genomic differentiation during stick-insect speciation

(2017) Rüdiger Riesch et al.   Nature Ecology & Evolution

Landscape genomic analysis of candidate genes for climate adaptation in a California endemic oak, Quercus lobata

(2016) V. L. Sork et al.   AMERICAN JOURNAL OF BOTANY

Epistasis-Induced Evolutionary Plateaus in Selection Responses

(2016) Arnaud Le Rouzic et al.   AMERICAN NATURALIST

Finding the Genomic Basis of Local Adaptation: Pitfalls, Practical Solutions, and Future Directions

(2016) Sean Hoban et al.   AMERICAN NATURALIST

Genetic mapping of Pinus flexilis major gene (Cr4) for resistance to white pine blister rust using transcriptome-based SNP genotyping

(2016) Jun-Jun Liu et al.   BMC GENOMICS

Detecting polygenic selection in marine populations by combining population genomics and quantitative genetics approaches

(2016) Pierre-Alexandre Gagnaire et al.   Current Zoology

Capturing neutral and adaptive genetic diversity for conservation in a highly structured tree species

(2016) Isabel Rodríguez-Quilón et al.   ECOLOGICAL APPLICATIONS

How does epistasis influence the response to selection?

(2016) N H Barton   HEREDITY

In situmarker-based assessment of leaf trait evolutionary potential in a marginal European beech population

(2016) A. Bontemps et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

The analysis of Gene Regulatory Networks in plant evo-devo

(2016) Aurélie C. M. Vialette-Guiraud et al.   JOURNAL OF EXPERIMENTAL BOTANY

Expression Divergence Is Correlated with Sequence Evolution but Not Positive Selection in Conifers

(2016) Kathryn A. Hodgins et al.   MOLECULAR BIOLOGY AND EVOLUTION

Recombination Rate Variation, Hitchhiking, and Demographic History Shape Deleterious Load in Poplar

(2016) M. Zhang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Multilocus approaches for the measurement of selection on correlated genetic loci

(2016) Zachariah Gompert et al.   MOLECULAR ECOLOGY

Evidence of divergent selection for drought and cold tolerance at landscape and local scales inAbies albaMill. in the French Mediterranean Alps

(2016) Anna M. Roschanski et al.   MOLECULAR ECOLOGY

Genomics of local adaptation with gene flow

(2016) Anna Tigano et al.   MOLECULAR ECOLOGY

Genomic variation at the tips of the adaptive radiation of Darwin's finches

(2016) Jaime A. Chaves et al.   MOLECULAR ECOLOGY

Demographic modelling with whole-genome data reveals parallel origin of similarPundamiliacichlid species after hybridization

(2016) Joana I. Meier et al.   MOLECULAR ECOLOGY

Breaking RAD: an evaluation of the utility of restriction site-associated DNA sequencing for genome scans of adaptation

(2016) David B. Lowry et al.   Molecular Ecology Resources

Exome capture from the spruce and pine giga-genomes

(2016) H. Suren et al.   Molecular Ecology Resources

Detection and interpretation of shared genetic influences on 42 human traits

(2016) Joseph K Pickrell et al.   NATURE GENETICS

Towards integration of population and comparative genomics in forest trees

(2016) Pär K. Ingvarsson et al.   NEW PHYTOLOGIST

The effect of gene interactions on the long-term response to selection

(2016) Tiago Paixão et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Early life stages contribute strongly to local adaptation inArabidopsis thaliana

(2016) Froukje M. Postma et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Predicting evolutionary rescue via evolving plasticity in stochastic environments

(2016) Jaime Ashander et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Factors influencing the effect size distribution of adaptive substitutions

(2016) Emily L. Dittmar et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Convergent local adaptation to climate in distantly related conifers

(2016) S. Yeaman et al.   SCIENCE

Estimation of number and size of QTL effects in forest tree traits

(2016) David Hall et al.   Tree Genetics & Genomes

Recombination Rate Evolution and the Origin of Species

(2016) Daniel Ortiz-Barrientos et al.   TRENDS IN ECOLOGY & EVOLUTION

Detecting Polygenic Evolution: Problems, Pitfalls, and Promises

(2016) Maren Wellenreuther et al.   TRENDS IN GENETICS

The Limits of Natural Selection in a Nonequilibrium World

(2016) Yaniv Brandvain et al.   TRENDS IN GENETICS

Bud phenology and growth are subject to divergent selection across a latitudinal gradient inPopulus angustifoliaand impact adaptation across the distributional range and associated arthropods

(2016) Luke M. Evans et al.   Ecology and Evolution

The Genetic Architecture of Quantitative Traits Cannot Be Inferred from Variance Component Analysis

(2016) Wen Huang et al.   PLoS Genetics

S/HIC: Robust Identification of Soft and Hard Sweeps Using Machine Learning

(2016) Daniel R. Schrider et al.   PLoS Genetics

Detecting polygenic selection in marine populations by combining population genomics and quantitative genetics approaches

(2016) Pierre-Alexandre Gagnaire et al.   Current Zoology

Local Adaptation by Alleles of Small Effect

(2015) Sam Yeaman   AMERICAN NATURALIST

Reliable Detection of Loci Responsible for Local Adaptation: Inference of a Null Model through Trimming the Distribution of FST

(2015) Michael C. Whitlock et al.   AMERICAN NATURALIST

Forest tree genomics: 10 achievements from the past 10 years and future prospects

(2015) Christophe Plomion et al.   ANNALS OF FOREST SCIENCE

Comparative transcriptomics of a complex of four European pine species

(2015) Witold Wachowiak et al.   BMC GENOMICS

Selection on a Genetic Polymorphism Counteracts Ecological Speciation in a Stick Insect

(2015) Aaron A. Comeault et al.   CURRENT BIOLOGY

Commentary: When does understanding phenotypic evolution require identification of the underlying genes?

(2015) Mark D. Rausher et al.   EVOLUTION

Alleles versus mutations: Understanding the evolution of genetic architecture requires a molecular perspective on allelic origins

(2015) David L. Remington   EVOLUTION

The Nature of Genetic Variation for Complex Traits Revealed by GWAS and Regional Heritability Mapping Analyses

(2015) A. Caballero et al.   GENETICS

RAD Capture (Rapture): Flexible and Efficient Sequence-Based Genotyping

(2015) O. A. Ali et al.   GENETICS

Genetic Adaptation to Climate in White Spruce Involves Small to Moderate Allele Frequency Shifts in Functionally Diverse Genes

(2015) Benjamin Hornoy et al.   Genome Biology and Evolution

Common garden experiments in the genomic era: new perspectives and opportunities

(2015) P de Villemereuil et al.   HEREDITY

Key Questions on the Role of Phenotypic Plasticity in Eco-Evolutionary Dynamics

(2015) Andrew P. Hendry   JOURNAL OF HEREDITY

Additive genetic variation and evolvability of a multivariate trait can be increased by epistatic gene action

(2015) Cortland K. Griswold   JOURNAL OF THEORETICAL BIOLOGY

Can the experimental evolution programme help us elucidate the genetic basis of adaptation in nature?

(2015) Susan F. Bailey et al.   MOLECULAR ECOLOGY

Field heritability of a plant adaptation to fire in heterogeneous landscapes

(2015) M. C. Castellanos et al.   MOLECULAR ECOLOGY

Signatures of positive selection: from selective sweeps at individual loci to subtle allele frequency changes in polygenic adaptation

(2015) Wolfgang Stephan   MOLECULAR ECOLOGY

The population genomics of rapid adaptation: disentangling signatures of selection and demography in white sands lizards

(2015) Stefan Laurent et al.   MOLECULAR ECOLOGY

A practical guide to environmental association analysis in landscape genomics

(2015) Christian Rellstab et al.   MOLECULAR ECOLOGY

The evolution of novel host use is unlikely to be constrained by trade-offs or a lack of genetic variation

(2015) Zachariah Gompert et al.   MOLECULAR ECOLOGY

The relative power of genome scans to detect local adaptation depends on sampling design and statistical method

(2015) Katie E. Lotterhos et al.   MOLECULAR ECOLOGY

Evolution of Darwin’s finches and their beaks revealed by genome sequencing

(2015) Sangeet Lamichhaney et al.   NATURE

Genome-wide patterns of differentiation and spatially varying selection between postglacial recolonization lineages ofPopulus alba(Salicaceae), a widespread forest tree

(2015) Kai N. Stölting et al.   NEW PHYTOLOGIST

Evidence for extensive parallelism but divergent genomic architecture of adaptation along altitudinal and latitudinal gradients inPopulus trichocarpa

(2015) Jason A. Holliday et al.   NEW PHYTOLOGIST

Conifer genomics and adaptation: at the crossroads of genetic diversity and genome function

(2015) Julien Prunier et al.   NEW PHYTOLOGIST

Pleiotropy and the evolution of floral integration

(2015) Stacey D. Smith   NEW PHYTOLOGIST

A flexible multi-species genome-wide 60K SNP chip developed from pooled resequencing of 240Eucalyptustree genomes across 12 species

(2015) Orzenil B. Silva-Junior et al.   NEW PHYTOLOGIST

Association mapping reveals the role of purifying selection in the maintenance of genomic variation in gene expression

(2015) Emily B. Josephs et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Trait dimensionality explains widespread variation in local adaptation

(2015) A. MacPherson et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The genetic architecture of local adaptation I: the genomic landscape of foxtail pine (Pinus balfouriana Grev. & Balf.) as revealed from a high-density linkage map

(2015) Christopher J. Friedline et al.   Tree Genetics & Genomes

Local adaptation at fine spatial scales: an example from sugar pine (Pinus lambertiana, Pinaceae)

(2015) Andrew J. Eckert et al.   Tree Genetics & Genomes

Recent landscape genomics studies in forest trees—what can we believe?

(2015) Irina Ćalić et al.   Tree Genetics & Genomes

Response of Polygenic Traits Under Stabilizing Selection and Mutation When Loci Have Unequal Effects

(2015) K. Jain et al.   G3-Genes Genomes Genetics

Simultaneous Discovery, Estimation and Prediction Analysis of Complex Traits Using a Bayesian Mixture Model

(2015) Gerhard Moser et al.   PLoS Genetics

Genome-Wide Association Mapping of Phenotypic Traits Subject to a Range of Intensities of Natural Selection in Timema cristinae

(2014) Aaron A. Comeault et al.   AMERICAN NATURALIST

The Utility of Fisher's Geometric Model in Evolutionary Genetics

(2014) O. Tenaillon   Annual Review of Ecology Evolution and Systematics

THE ACTION OF STABILIZING SELECTION, MUTATION, AND DRIFT ON EPISTATIC QUANTITATIVE TRAITS

(2014) Victoria Ávila et al.   EVOLUTION

FISHER'S GEOMETRIC MODEL WITH A MOVING OPTIMUM

(2014) Sebastian Matuszewski et al.   EVOLUTION

Evidences of local adaptation in quantitative traits in Prosopis alba (Leguminosae)

(2014) C. Bessega et al.   GENETICA

Influence of Gene Interaction on Complex Trait Variation with Multilocus Models

(2014) Asko Mäki-Tanila et al.   GENETICS

MultiBLUP: improved SNP-based prediction for complex traits

(2014) Doug Speed et al.   GENOME RESEARCH

Estimating quantitative genetic parameters in wild populations: a comparison of pedigree and genomic approaches

(2014) Camillo Bérénos et al.   MOLECULAR ECOLOGY

Detecting short spatial scale local adaptation and epistatic selection in climate-related candidate genes in European beech (Fagus sylvatica) populations

(2014) Katalin Csilléry et al.   MOLECULAR ECOLOGY

Evaluation of demographic history and neutral parameterization on the performance ofFSToutlier tests

(2014) Katie E. Lotterhos et al.   MOLECULAR ECOLOGY

Reanalysis suggests that genomic islands of speciation are due to reduced diversity, not reduced gene flow

(2014) Tami E. Cruickshank et al.   MOLECULAR ECOLOGY

QST-FSTcomparisons with unbalanced half-sib designs

(2014) Kimberly J. Gilbert et al.   Molecular Ecology Resources

Systems genetics: A paradigm to improve discovery of candidate genes and mechanisms underlying complex traits

(2014) F. Alex Feltus   PLANT SCIENCE

The Role of Population Origin and Microenvironment in Seedling Emergence and Early Survival in Mediterranean Maritime Pine (Pinus pinaster Aiton)

(2014) Natalia Vizcaíno-Palomar et al.   PLoS One

Modeling Evolution Using the Probability of Fixation: History and Implications

(2014) David M. McCandlish et al.   QUARTERLY REVIEW OF BIOLOGY

Advances and limits of using population genetics to understand local adaptation

(2014) Peter Tiffin et al.   TRENDS IN ECOLOGY & EVOLUTION

Epistasis and natural selection shape the mutational architecture of complex traits

(2014) Adam G. Jones et al.   Nature Communications

On the unfounded enthusiasm for soft selective sweeps

(2014) Jeffrey D Jensen   Nature Communications

A Population Genetic Signal of Polygenic Adaptation

(2014) Jeremy J. Berg et al.   PLoS Genetics

Network analysis of GWAS data

(2013) Mark DM Leiserson et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

A practical guide to measuring local adaptation

(2013) François Blanquart et al.   ECOLOGY LETTERS

WHY EPISTASIS IS IMPORTANT FOR SELECTION AND ADAPTATION

(2013) Thomas F. Hansen   EVOLUTION

Rapid evolution of quantitative traits: theoretical perspectives

(2013) Michael Kopp et al.   Evolutionary Applications

Evolutionary and plastic responses to climate change in terrestrial plant populations

(2013) Steven J. Franks et al.   Evolutionary Applications

Potential for evolutionary responses to climate change - evidence from tree populations

(2013) Florian J. Alberto et al.   GLOBAL CHANGE BIOLOGY

Background Selection 20 Years on

(2013) Brian Charlesworth   JOURNAL OF HEREDITY

Multilocus analyses reveal little evidence for lineage-wide adaptive evolution within major clades of soft pines (PinussubgenusStrobus)

(2013) Andrew J. Eckert et al.   MOLECULAR ECOLOGY

Detecting selection along environmental gradients: analysis of eight methods and their effectiveness for outbreeding and selfing populations

(2013) Stéphane De Mita et al.   MOLECULAR ECOLOGY

CartograTree: connecting tree genomes, phenotypes and environment

(2013) Hans A. Vasquez-Gross et al.   Molecular Ecology Resources

The Norway spruce genome sequence and conifer genome evolution

(2013) Björn Nystedt et al.   NATURE

Epistasis and quantitative traits: using model organisms to study gene–gene interactions

(2013) Trudy F. C. Mackay   NATURE REVIEWS GENETICS

QST–FST comparisons: evolutionary and ecological insights from genomic heterogeneity

(2013) Tuomas Leinonen et al.   NATURE REVIEWS GENETICS

Ecological genomics of local adaptation

(2013) Outi Savolainen et al.   NATURE REVIEWS GENETICS

Systems genetics approaches to understand complex traits

(2013) Mete Civelek et al.   NATURE REVIEWS GENETICS

In situgenetic association for serotiny, a fire-related trait, in Mediterranean maritime pine (Pinus pinaster)

(2013) Katharina B. Budde et al.   NEW PHYTOLOGIST

Genomic rearrangements and the evolution of clusters of locally adaptive loci

(2013) S. Yeaman   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dissection of complex traits in forest trees — opportunities for marker-assisted selection

(2013) Saravanan Thavamanikumar et al.   Tree Genetics & Genomes

Putting the landscape into the genomics of trees: approaches for understanding local adaptation and population responses to changing climate

(2013) V. L. Sork et al.   Tree Genetics & Genomes

Population genomics of rapid adaptation by soft selective sweeps

(2013) Philipp W. Messer et al.   TRENDS IN ECOLOGY & EVOLUTION

A century after Fisher: time for a new paradigm in quantitative genetics

(2013) Ronald M. Nelson et al.   TRENDS IN GENETICS

An Evolutionary Perspective on Epistasis and the Missing Heritability

(2013) Gibran Hemani et al.   PLoS Genetics

Polygenic Modeling with Bayesian Sparse Linear Mixed Models

(2013) Xiang Zhou et al.   PLoS Genetics

Designing a transcriptome next-generation sequencing project for a nonmodel plant species1

(2012) Susan R. Strickler et al.   AMERICAN JOURNAL OF BOTANY

A Multi-SNP Locus-Association Method Reveals a Substantial Fraction of the Missing Heritability

(2012) Georg B. Ehret et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Adaptive Genetic Variation on the Landscape: Methods and Cases

(2012) Sean D. Schoville et al.   Annual Review of Ecology Evolution and Systematics

Long-distance gene flow and adaptation of forest trees to rapid climate change

(2012) Antoine Kremer et al.   ECOLOGY LETTERS

FISHER'S GEOMETRICAL MODEL OF FITNESS LANDSCAPE AND VARIANCE IN FITNESS WITHIN A CHANGING ENVIRONMENT

(2012) Xu-Sheng Zhang   EVOLUTION

GENETIC CONSTRAINTS ON ADAPTATION TO A CHANGING ENVIRONMENT

(2012) Luis-Miguel Chevin   EVOLUTION

Selective Sweeps in Multilocus Models of Quantitative Traits

(2012) P. Pavlidis et al.   GENETICS

Accuracy of Genomic Selection Methods in a Standard Data Set of Loblolly Pine (Pinus taeda L.)

(2012) M. F. R. Resende et al.   GENETICS

Genome-wide association genetics of an adaptive trait in lodgepole pine

(2012) THOMAS L. PARCHMAN et al.   MOLECULAR ECOLOGY

QST 

(2012) Jean-Baptiste Lamy et al.   MOLECULAR ECOLOGY

The genetic differentiation at quantitative trait loci under local adaptation

(2012) VALÉRIE LE CORRE et al.   MOLECULAR ECOLOGY

Genetic trade-offs and conditional neutrality contribute to local adaptation

(2012) JILL T. ANDERSON et al.   MOLECULAR ECOLOGY

QST in a hierarchically structured population

(2012) MICHAEL C. WHITLOCK et al.   Molecular Ecology Resources

Rare and common variants: twenty arguments

(2012) Greg Gibson   NATURE REVIEWS GENETICS

Comparative studies of gene expression and the evolution of gene regulation

(2012) Irene Gallego Romero et al.   NATURE REVIEWS GENETICS

Ecological and genetic factors linked to contrasting genome dynamics in seed plants

(2012) A. R. Leitch et al.   NEW PHYTOLOGIST

Genomic selection for growth and wood quality in Eucalyptus: capturing the missing heritability and accelerating breeding for complex traits in forest trees

(2012) Marcos D. V. Resende et al.   NEW PHYTOLOGIST

Uniform standards for genome databases in forest and fruit trees

(2012) J. L. Wegrzyn et al.   Tree Genetics & Genomes

The genomics of speciation-with-gene-flow

(2012) Jeffrey L. Feder et al.   TRENDS IN GENETICS

The many faces of pleiotropy

(2012) Annalise B. Paaby et al.   TRENDS IN GENETICS

Bayesian variable selection regression for genome-wide association studies and other large-scale problems

(2011) Yongtao Guan et al.   Annals of Applied Statistics

Accounting for multiple comparisons in a genome-wide association study (GWAS)

(2011) Randall C Johnson et al.   BMC GENOMICS

THE QTN PROGRAM AND THE ALLELES THAT MATTER FOR EVOLUTION: ALL THAT'S GOLD DOES NOT GLITTER

(2011) Matthew V. Rockman   EVOLUTION

ESTABLISHMENT AND MAINTENANCE OF ADAPTIVE GENETIC DIVERGENCE UNDER MIGRATION, SELECTION, AND DRIFT

(2011) Sam Yeaman et al.   EVOLUTION

THE GENETIC ARCHITECTURE OF ADAPTATION UNDER MIGRATION-SELECTION BALANCE

(2011) Sam Yeaman et al.   EVOLUTION

Heritability is not Evolvability

(2011) Thomas F. Hansen et al.   Evolutionary Biology

A New Method to Uncover Signatures of Divergent and Stabilizing Selection in Quantitative Traits

(2011) Otso Ovaskainen et al.   GENETICS

Decoupling of differentiation between traits and their underlying genes in response to divergent selection

(2011) A Kremer et al.   HEREDITY

Adaptation to marginal habitats by evolution of increased phenotypic plasticity

(2011) L.-M. CHEVIN et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Scanning the genome for gene SNPs related to climate adaptation and estimating selection at the molecular level in boreal black spruce

(2011) JULIEN PRUNIER et al.   MOLECULAR ECOLOGY

The pleiotropic structure of the genotype–phenotype map: the evolvability of complex organisms

(2011) Günter P. Wagner et al.   NATURE REVIEWS GENETICS

Forest tree genomics: growing resources and applications

(2011) David B. Neale et al.   NATURE REVIEWS GENETICS

Association genetics of the loblolly pine (Pinus taeda, Pinaceae) metabolome

(2011) Andrew J. Eckert et al.   NEW PHYTOLOGIST

Accelerating the domestication of trees using genomic selection: accuracy of prediction models across ages and environments

(2011) M. F. R. Resende et al.   NEW PHYTOLOGIST

Uniform Selection as a Primary Force Reducing Population Genetic Differentiation of Cavitation Resistance across a Species Range

(2011) Jean-Baptiste Lamy et al.   PLoS One

The causes of epistasis

(2011) J. A. G. M. de Visser et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The effects of linkage and gene flow on local adaptation: A two-locus continent–island model

(2011) Reinhard Bürger et al.   THEORETICAL POPULATION BIOLOGY

Prospects for genomic selection in conifer breeding: a simulation study of Cryptomeria japonica

(2011) Hiroyoshi Iwata et al.   Tree Genetics & Genomes

Germination, Postgermination Adaptation, and Species Ecological Ranges

(2010) Kathleen Donohue et al.   Annual Review of Ecology Evolution and Systematics

Comparative transcriptomics of drought responses in Populus: a meta-analysis of genome-wide expression profiling in mature leaves and root apices across two genotypes

(2010) David Cohen et al.   BMC GENOMICS

FISHER'S MODEL AND THE GENOMICS OF ADAPTATION: RESTRICTED PLEIOTROPY, HETEROGENOUS MUTATION, AND PARALLEL EVOLUTION

(2010) Luis-Miguel Chevin et al.   EVOLUTION

Parallel Adaptation: One or Many Waves of Advance of an Advantageous Allele?

(2010) P. Ralph et al.   GENETICS

Conditions Under Which Genome-Wide Association Studies Will be Positively Misleading

(2010) A. Platt et al.   GENETICS

Transcriptional Regulation of Secondary Growth and Wood Formation

(2010) Juan Du et al.   Journal of Integrative Plant Biology

Common SNPs explain a large proportion of the heritability for human height

(2010) Jian Yang et al.   NATURE GENETICS

Adaptation – not by sweeps alone

(2010) Jonathan K. Pritchard et al.   NATURE REVIEWS GENETICS

The population genomics of plant adaptation

(2010) Mathieu Siol et al.   NEW PHYTOLOGIST

On epistasis: why it is unimportant in polygenic directional selection

(2010) J. F. Crow   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Genetic hitchhiking versus background selection: the controversy and its implications

(2010) W. Stephan   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

What can we learn about the distribution of fitness effects of new mutations from DNA sequence data?

(2010) P. D. Keightley et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Evolution of Disease Response Genes in Loblolly Pine: Insights from Candidate Genes

(2010) Elhan S. Ersoz et al.   PLoS One

Genomic patterns of pleiotropy and the evolution of complexity

(2010) Z. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genetic architecture of a complex trait and its implications for fitness and genome-wide association studies

(2010) A. Eyre-Walker   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Estimating Effects and Making Predictions from Genome-Wide Marker Data

(2010) Michael E. Goddard et al.   STATISTICAL SCIENCE

Genomic selection in forest tree breeding

(2010) Dario Grattapaglia et al.   Tree Genetics & Genomes

Rare Variants Create Synthetic Genome-Wide Associations

(2010) Samuel P. Dickson et al.   PLOS BIOLOGY

Adaptation, Plasticity, and Extinction in a Changing Environment: Towards a Predictive Theory

(2010) Luis-Miguel Chevin et al.   PLOS BIOLOGY

Local adaptation in European populations of Arabidopsis lyrata (Brassicaceae)

(2009) P. H. Leinonen et al.   AMERICAN JOURNAL OF BOTANY

A Quantitative Survey of Local Adaptation and Fitness Trade‐Offs

(2009) Joe Hereford   AMERICAN NATURALIST

Defining gene and QTL networks

(2009) Ritsert C Jansen et al.   CURRENT OPINION IN PLANT BIOLOGY

THE EFFICACY OF DIVERGENCE HITCHHIKING IN GENERATING GENOMIC ISLANDS DURING ECOLOGICAL SPECIATION

(2009) Jeffrey L. Feder et al.   EVOLUTION

The Genetic Basis of Phenotypic Adaptation I: Fixation of Beneficial Mutations in the Moving Optimum Model

(2009) M. Kopp et al.   GENETICS

The Genetic Basis of Phenotypic Adaptation II: The Distribution of Adaptive Substitutions in the Moving Optimum Model

(2009) Michael Kopp et al.   GENETICS

Testing for Spatially Divergent Selection: Comparing QST to FST

(2009) M. C. Whitlock et al.   GENETICS

Factors Affecting Accuracy From Genomic Selection in Populations Derived From Multiple Inbred Lines: A Barley Case Study

(2009) S. Zhong et al.   GENETICS

Who believes in whole-genome scans for selection?

(2009) J Hermisson   HEREDITY

Adaptation to an extraordinary environment by evolution of phenotypic plasticity and genetic assimilation

(2009) R. LANDE   JOURNAL OF EVOLUTIONARY BIOLOGY

Maintaining evolvability

(2009) James F. Crow   JOURNAL OF GENETICS

Selection on Nuclear Genes in a Pinus Phylogeny

(2009) A.E. Palmé et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genome evolution and adaptation in a long-term experiment with Escherichia coli

(2009) Jeffrey E. Barrick et al.   NATURE

Bayesian statistical methods for genetic association studies

(2009) Matthew Stephens et al.   NATURE REVIEWS GENETICS

The genetics of quantitative traits: challenges and prospects

(2009) Trudy F. C. Mackay et al.   NATURE REVIEWS GENETICS

Understanding and using quantitative genetic variation

(2009) W. G. Hill   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Evolution of Genome Size and Complexity in Pinus

(2009) Alison M. Morse et al.   PLoS One

Designing Genome-Wide Association Studies: Sample Size, Power, Imputation, and the Choice of Genotyping Chip

(2009) Chris C. A. Spencer et al.   PLoS Genetics

Ecological genetics and seed transfer guidelines for Pinus albicaulis (Pinaceae)

(2008) Andrew D. Bower et al.   AMERICAN JOURNAL OF BOTANY

Adaptation to Marginal Habitats

(2008) Tadeusz J. Kawecki   Annual Review of Ecology Evolution and Systematics

Revisiting the Impact of Inversions in Evolution: From Population Genetic Markers to Drivers of Adaptive Shifts and Speciation?

(2008) Ary A. Hoffmann et al.   Annual Review of Ecology Evolution and Systematics

Selective Sweep at a Quantitative Trait Locus in the Presence of Background Genetic Variation

(2008) Luis-Miguel Chevin et al.   GENETICS

The Distribution of Beneficial and Fixed Mutation Fitness Effects Close to an Optimum

(2008) Guillaume Martin et al.   GENETICS

Pleiotropic scaling of gene effects and the ‘cost of complexity’

(2008) Günter P. Wagner et al.   NATURE

Epistasis — the essential role of gene interactions in the structure and evolution of genetic systems

(2008) Patrick C. Phillips   NATURE REVIEWS GENETICS

Comparative analysis of the transcriptomes ofPopulus trichocarpaandArabidopsis thalianasuggests extensive evolution of gene expression regulation in angiosperms

(2008) Tania Quesada et al.   NEW PHYTOLOGIST

Genomewide selection in oil palm: increasing selection gain per unit time and cost with small populations

(2008) C. K. Wong et al.   THEORETICAL AND APPLIED GENETICS

High-throughput genotyping and mapping of single nucleotide polymorphisms in loblolly pine (Pinus taeda L.)

(2008) Andrew J. Eckert et al.   Tree Genetics & Genomes

Data and Theory Point to Mainly Additive Genetic Variance for Complex Traits

(2008) William G. Hill et al.   PLoS Genetics

Adaptation from standing genetic variation

(2007) R BARRETT et al.   TRENDS IN ECOLOGY & EVOLUTION