Ecological genomics of local adaptation

A practical guide to measuring local adaptation

(2013) François Blanquart et al.   ECOLOGY LETTERS

Gene expression drives local adaptation in humans

(2013) H. B. Fraser   GENOME RESEARCH

Potential for evolutionary responses to climate change - evidence from tree populations

(2013) Florian J. Alberto et al.   GLOBAL CHANGE BIOLOGY

Evidence for adaptive phenotypic differentiation in Baltic Sea sticklebacks

(2013) J. DeFaveri et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Is local selection so widespread in river organisms? Fractal geometry of river networks leads to high bias in outlier detection

(2013) Yoan Fourcade et al.   MOLECULAR ECOLOGY

Pervasive selection or is it…? why areFSToutliers sometimes so frequent?

(2013) Nicolas Bierne et al.   MOLECULAR ECOLOGY

Detecting selection along environmental gradients: analysis of eight methods and their effectiveness for outbreeding and selfing populations

(2013) Stéphane De Mita et al.   MOLECULAR ECOLOGY

Massive genomic variation and strong selection in Arabidopsis thaliana lines from Sweden

(2013) Quan Long et al.   NATURE GENETICS

QST–FST comparisons: evolutionary and ecological insights from genomic heterogeneity

(2013) Tuomas Leinonen et al.   NATURE REVIEWS GENETICS

Genomic rearrangements and the evolution of clusters of locally adaptive loci

(2013) S. Yeaman   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Adaptive Evolution of Multiple Traits Through Multiple Mutations at a Single Gene

(2013) C. R. Linnen et al.   SCIENCE

Parallel Evolutionary Dynamics of Adaptive Diversification in Escherichia coli

(2013) Matthew D. Herron et al.   PLOS BIOLOGY

Indirect Evolution of Hybrid Lethality Due to Linkage with Selected Locus in Mimulus guttatus

(2013) Kevin M. Wright et al.   PLOS BIOLOGY

Lessons from Dwarf8 on the Strengths and Weaknesses of Structured Association Mapping

(2013) Sara J. Larsson et al.   PLoS Genetics

Reference-Free Population Genomics from Next-Generation Transcriptome Data and the Vertebrate–Invertebrate Gap

(2013) Philippe Gayral et al.   PLoS Genetics

Genetics of Climate Change Adaptation

(2012) Steven J. Franks et al.   Annual Review of Genetics

Evolution in response to climate change: In pursuit of the missing evidence

(2012) Juha Merilä   BIOESSAYS

Transcriptome-based exon capture enables highly cost-effective comparative genomic data collection at moderate evolutionary scales

(2012) Ke Bi et al.   BMC GENOMICS

Quantifying the roles of ecology and geography in spatial genetic divergence

(2012) Ian J. Wang et al.   ECOLOGY LETTERS

GENETIC SIGNATURE OF ADAPTIVE PEAK SHIFT IN THREESPINE STICKLEBACK

(2012) Sean M. Rogers et al.   EVOLUTION

Disentangling the Roles of History and Local Selection in Shaping Clinal Variation of Allele Frequencies and Gene Expression in Norway Spruce ( Picea abies )

(2012) Jun Chen et al.   GENETICS

The peppered moth and industrial melanism: evolution of a natural selection case study

(2012) L M Cook et al.   HEREDITY

The effects of migration and drift on local adaptation to a heterogeneous environment

(2012) F. BLANQUART et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Genome-wide association genetics of an adaptive trait in lodgepole pine

(2012) THOMAS L. PARCHMAN et al.   MOLECULAR ECOLOGY

Genetic basis of local adaptation and flowering time variation inArabidopsis lyrata

(2012) PÄIVI H. LEINONEN et al.   MOLECULAR ECOLOGY

Genetic trade-offs and conditional neutrality contribute to local adaptation

(2012) JILL T. ANDERSON et al.   MOLECULAR ECOLOGY

The genomic basis of adaptive evolution in threespine sticklebacks

(2012) Felicity C. Jones et al.   NATURE

Evidence of widespread selection on standing variation in Europe at height-associated SNPs

(2012) Michael C Turchin et al.   NATURE GENETICS

An efficient multi-locus mixed-model approach for genome-wide association studies in structured populations

(2012) Vincent Segura et al.   NATURE GENETICS

The nature of confounding in genome-wide association studies

(2012) Bjarni J. Vilhjálmsson et al.   NATURE REVIEWS GENETICS

Adaptive evolution: evaluating empirical support for theoretical predictions

(2012) Carrie F. Olson-Manning et al.   NATURE REVIEWS GENETICS

Local adaptation in The model plant

(2012) David B. Lowry   NEW PHYTOLOGIST

Reciprocal transplants demonstrate strong adaptive differentiation of the model organism Arabidopsis thaliana in its native range

(2012) Jon Ågren et al.   NEW PHYTOLOGIST

Rapid climate change and the rate of adaptation: insight from experimental quantitative genetics

(2012) Ruth G. Shaw et al.   NEW PHYTOLOGIST

Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species

(2012) Brant K. Peterson et al.   PLoS One

The probability of genetic parallelism and convergence in natural populations

(2012) G. L. Conte et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The Molecular Diversity of Adaptive Convergence

(2012) O. Tenaillon et al.   SCIENCE

Thermal legacies: transgenerational effects of temperature on growth in a vertebrate

(2011) Santiago Salinas et al.   ECOLOGY LETTERS

GLOBAL ANALYSIS OF GENES INVOLVED IN FRESHWATER ADAPTATION IN THREESPINE STICKLEBACKS (GASTEROSTEUS ACULEATUS)

(2011) Jacquelin DeFaveri et al.   EVOLUTION

DIRECTIONAL SELECTION IN TEMPORALLY REPLICATED STUDIES IS REMARKABLY CONSISTENT

(2011) Michael B. Morrissey et al.   EVOLUTION

THE QTN PROGRAM AND THE ALLELES THAT MATTER FOR EVOLUTION: ALL THAT'S GOLD DOES NOT GLITTER

(2011) Matthew V. Rockman   EVOLUTION

ESTABLISHMENT AND MAINTENANCE OF ADAPTIVE GENETIC DIVERGENCE UNDER MIGRATION, SELECTION, AND DRIFT

(2011) Sam Yeaman et al.   EVOLUTION

THE GENETIC ARCHITECTURE OF ADAPTATION UNDER MIGRATION-SELECTION BALANCE

(2011) Sam Yeaman et al.   EVOLUTION

Genetic Architecture of Flowering-Time Variation inArabidopsis thaliana

(2011) Patrice A. Salomé et al.   GENETICS

A New Method to Uncover Signatures of Divergent and Stabilizing Selection in Quantitative Traits

(2011) Otso Ovaskainen et al.   GENETICS

The genetic basis of divergent pigment patterns in juvenile threespine sticklebacks

(2011) A K Greenwood et al.   HEREDITY

Decoupling of differentiation between traits and their underlying genes in response to divergent selection

(2011) A Kremer et al.   HEREDITY

Extent and scale of local adaptation in salmonid fishes: review and meta-analysis

(2011) D J Fraser et al.   HEREDITY

Joint estimation of contemporary seed and pollen dispersal rates among plant populations

(2011) J. J. ROBLEDO-ARNUNCIO   Molecular Ecology Resources

Whole-genome sequencing of multiple Arabidopsis thaliana populations

(2011) Jun Cao et al.   NATURE GENETICS

Molecular spandrels: tests of adaptation at the genetic level

(2011) Rowan D. H. Barrett et al.   NATURE REVIEWS GENETICS

Altitudinal and Climatic Adaptation Is Mediated by Flowering Traits and FRI, FLC, and PHYC Genes in Arabidopsis

(2011) B. Mendez-Vigo et al.   PLANT PHYSIOLOGY

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

Major-Effect Alleles at Relatively Few Loci Underlie Distinct Vernalization and Flowering Variation in Arabidopsis Accessions

(2011) Amy Strange et al.   PLoS One

Classic Selective Sweeps Were Rare in Recent Human Evolution

(2011) R. D. Hernandez et al.   SCIENCE

A Map of Local Adaptation in Arabidopsis thaliana

(2011) A. Fournier-Level et al.   SCIENCE

The Genomic Basis of Local Climatic Adaptation

(2011) O. Savolainen   SCIENCE

Industrial Melanism in British Peppered Moths Has a Singular and Recent Mutational Origin

(2011) A. E. van't Hof et al.   SCIENCE

Adaptation to Climate Across the Arabidopsis thaliana Genome

(2011) A. M. Hancock et al.   SCIENCE

Pervasive Adaptive Protein Evolution Apparent in Diversity Patterns around Amino Acid Substitutions in Drosophila simulans

(2011) Shmuel Sattath et al.   PLoS Genetics

Adaptations to Climate-Mediated Selective Pressures in Humans

(2011) Angela M. Hancock et al.   PLoS Genetics

Why is adaptation prevented at ecological margins? New insights from individual-based simulations

(2010) Jon R. Bridle et al.   ECOLOGY LETTERS

LIFE-HISTORY QTLS AND NATURAL SELECTION ON FLOWERING TIME IN BOECHERA STRICTA, A PERENNIAL RELATIVE OF ARABIDOPSIS

(2010) JILL T. ANDERSON et al.   EVOLUTION

INTEGRATING EVOLUTIONARY AND FUNCTIONAL APPROACHES TO INFER ADAPTATION AT SPECIFIC LOCI

(2010) Jay F. Storz et al.   EVOLUTION

Using Environmental Correlations to Identify Loci Underlying Local Adaptation

(2010) G. Coop et al.   GENETICS

Population genetic inference from genomic sequence variation

(2010) J. E. Pool et al.   GENOME RESEARCH

Adaptive evolution of lateral plates in three-spined stickleback Gasterosteus aculeatus: a case study in functional analysis of natural variation

(2010) R. D. H. Barrett   JOURNAL OF FISH BIOLOGY

The earliest stages of adaptation in an experimental plant population: strong selection on QTLS for seed dormancy

(2010) XUEQING HUANG et al.   MOLECULAR ECOLOGY

Is local adaptation in Mimulus guttatus caused by trade-offs at individual loci?

(2010) M. C. HALL et al.   MOLECULAR ECOLOGY

Back to nature: ecological genomics of loblolly pine (Pinus taeda, Pinaceae)

(2010) ANDREW J. ECKERT et al.   MOLECULAR ECOLOGY

Genome-wide analysis of a long-term evolution experiment with Drosophila

(2010) Molly K. Burke et al.   NATURE

Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines

(2010) Susanna Atwell et al.   NATURE

Population resequencing reveals local adaptation of Arabidopsis lyrata to serpentine soils

(2010) Thomas L Turner et al.   NATURE GENETICS

Common SNPs explain a large proportion of the heritability for human height

(2010) Jian Yang et al.   NATURE GENETICS

Variance component model to account for sample structure in genome-wide association studies

(2010) Hyun Min Kang et al.   NATURE GENETICS

Adaptation – not by sweeps alone

(2010) Jonathan K. Pritchard et al.   NATURE REVIEWS GENETICS

Convergence in pigmentation at multiple levels: mutations, genes and function

(2010) M. Manceau et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Adaptation genomics: the next generation

(2010) Jessica Stapley et al.   TRENDS IN ECOLOGY & EVOLUTION

Plant phenotypic plasticity in a changing climate

(2010) A.B. Nicotra et al.   TRENDS IN PLANT SCIENCE

A Widespread Chromosomal Inversion Polymorphism Contributes to a Major Life-History Transition, Local Adaptation, and Reproductive Isolation

(2010) David B. Lowry et al.   PLOS BIOLOGY

Adaptation, Plasticity, and Extinction in a Changing Environment: Towards a Predictive Theory

(2010) Luis-Miguel Chevin et al.   PLOS BIOLOGY

Population Genomics of Parallel Adaptation in Threespine Stickleback using Sequenced RAD Tags

(2010) Paul A. Hohenlohe et al.   PLoS Genetics

Linkage and Association Mapping of Arabidopsis thaliana Flowering Time in Nature

(2010) Benjamin Brachi et al.   PLoS Genetics

A Coastal Cline in Sodium Accumulation in Arabidopsis thaliana Is Driven by Natural Variation of the Sodium Transporter AtHKT1;1

(2010) Ivan Baxter et al.   PLoS Genetics

A Quantitative Survey of Local Adaptation and Fitness Trade‐Offs

(2009) Joe Hereford   AMERICAN NATURALIST

The Covariance between Genetic and Environmental Influences across Ecological Gradients

(2009) David O. Conover et al.   Annals of the New York Academy of Sciences

Contrasting patterns of transgenerational plasticity in ecologically distinct congeners

(2009) Sonia E. Sultan et al.   ECOLOGY

THE BIOLOGY OF SPECIATION

(2009) James M. Sobel et al.   EVOLUTION

Association Genetics of Coastal Douglas Fir ( Pseudotsuga menziesii var. menziesii , Pinaceae). I. Cold-Hardiness Related Traits

(2009) Andrew J. Eckert et al.   GENETICS

Isolation with Migration Models for More Than Two Populations

(2009) Jody Hey   MOLECULAR BIOLOGY AND EVOLUTION

Testing for local adaptation inAvena barbata: a classic example of ecotypic divergence

(2009) ROBERT G. LATTA   MOLECULAR ECOLOGY

The velocity of climate change

(2009) Scott R. Loarie et al.   NATURE

The genetics of quantitative traits: challenges and prospects

(2009) Trudy F. C. Mackay et al.   NATURE REVIEWS GENETICS

The Genetic Architecture of Maize Flowering Time

(2009) E. S. Buckler et al.   SCIENCE

Adaptive Evolution of Pelvic Reduction in Sticklebacks by Recurrent Deletion of a Pitx1 Enhancer

(2009) Y. F. Chan et al.   SCIENCE

Effects of Genetic Perturbation on Seasonal Life History Plasticity

(2009) A. M. Wilczek et al.   SCIENCE

A Multiparent Advanced Generation Inter-Cross to Fine-Map Quantitative Traits in Arabidopsis thaliana

(2009) Paula X. Kover et al.   PLoS Genetics

Unifying Life‐History Analyses for Inference of Fitness and Population Growth

(2008) Ruth G. Shaw et al.   AMERICAN NATURALIST

NATURAL SELECTION ALONG AN ENVIRONMENTAL GRADIENT: A CLASSIC CLINE IN MOUSE PIGMENTATION

(2008) Lynne M. Mullen et al.   EVOLUTION

Adaptation, migration or extirpation: climate change outcomes for tree populations

(2008) Sally N. Aitken et al.   Evolutionary Applications

Effects of Spatially Varying Selection on Nucleotide Diversity and Linkage Disequilibrium: Insights From Deer Mouse Globin Genes

(2008) J. F. Storz et al.   GENETICS

Nucleotide Polymorphism and Phenotypic Associations Within and Around the phytochrome B2 Locus in European Aspen (Populus tremula, Salicaceae)

(2008) P. K. Ingvarsson et al.   GENETICS

Genomic Analysis of Adaptive Differentiation in Drosophila melanogaster

(2008) T. L. Turner et al.   GENETICS

A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective

(2008) M. Foll et al.   GENETICS

Efficient Control of Population Structure in Model Organism Association Mapping

(2008) H. M. Kang et al.   GENETICS

Association genetics in Pinus taeda L. II. Carbon isotope discrimination

(2008) S C González-Martínez et al.   HEREDITY

Genetic approaches to crop improvement: responding to environmental and population changes

(2008) Shin Takeda et al.   NATURE REVIEWS GENETICS

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

(2008) Nathan A. Baird et al.   PLoS One

A Meta-Analysis of Local Adaptation in Plants

(2008) Roosa Leimu et al.   PLoS One

Natural Selection on a Major Armor Gene in Threespine Stickleback

(2008) R. D. H. Barrett et al.   SCIENCE

Surfing during population expansions promotes genetic revolutions and structuration

(2008) Laurent Excoffier et al.   TRENDS IN ECOLOGY & EVOLUTION

Climate change and evolution: disentangling environmental and genetic responses

(2007) P. GIENAPP et al.   MOLECULAR ECOLOGY