Putting the landscape into the genomics of trees: approaches for understanding local adaptation and population responses to changing climate

Spatially variable natural selection and the divergence between parapatric subspecies of lodgepole pine (Pinus contorta , Pinaceae)

(2012) Andrew J. Eckert et al.   AMERICAN JOURNAL OF BOTANY

Disentangling the Roles of History and Local Selection in Shaping Clinal Variation of Allele Frequencies and Gene Expression in Norway Spruce ( Picea abies )

(2012) Jun Chen et al.   GENETICS

Defining the landscape of adaptive genetic diversity

(2012) ANDREW J. ECKERT et al.   MOLECULAR ECOLOGY

The geographical and environmental determinants of genetic diversity for four alpine conifers of the European Alps

(2012) E. Mosca et al.   MOLECULAR ECOLOGY

Genome-wide association genetics of an adaptive trait in lodgepole pine

(2012) THOMAS L. PARCHMAN et al.   MOLECULAR ECOLOGY

Characterizing genomic variation ofArabidopsis thaliana: the roles of geography and climate

(2012) JESSE R. LASKY et al.   MOLECULAR ECOLOGY

The genetic differentiation at quantitative trait loci under local adaptation

(2012) VALÉRIE LE CORRE et al.   MOLECULAR ECOLOGY

Towards decoding the conifer giga-genome

(2012) John Mackay et al.   PLANT MOLECULAR BIOLOGY

QTL mapping in white spruce: gene maps and genomic regions underlying adaptive traits across pedigrees, years and environments

(2011) Betty Pelgas et al.   BMC GENOMICS

Extended Linkage Disequilibrium in Noncoding Regions in a Conifer, Cryptomeria japonica

(2011) E. Moritsuka et al.   GENETICS

Association genetics of carbon isotope discrimination, height and foliar nitrogen in a natural population of Pinus taeda L

(2011) W P Cumbie et al.   HEREDITY

Decoupling of differentiation between traits and their underlying genes in response to divergent selection

(2011) A Kremer et al.   HEREDITY

Scanning the genome for gene SNPs related to climate adaptation and estimating selection at the molecular level in boreal black spruce

(2011) JULIEN PRUNIER et al.   MOLECULAR ECOLOGY

Genome-wide genetic marker discovery and genotyping using next-generation sequencing

(2011) John W. Davey et al.   NATURE REVIEWS GENETICS

Molecular spandrels: tests of adaptation at the genetic level

(2011) Rowan D. H. Barrett et al.   NATURE REVIEWS GENETICS

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

A Map of Local Adaptation in Arabidopsis thaliana

(2011) A. Fournier-Level et al.   SCIENCE

Evolutionary genetics of plant adaptation

(2011) Jill T. Anderson et al.   TRENDS IN GENETICS

Signatures of Environmental Genetic Adaptation Pinpoint Pathogens as the Main Selective Pressure through Human Evolution

(2011) Matteo Fumagalli et al.   PLoS Genetics

Applications of landscape genetics in conservation biology: concepts and challenges

(2010) Gernot Segelbacher et al.   CONSERVATION GENETICS

Integrating environmental and genetic effects to predict responses of tree populations to climate

(2010) Tongli Wang et al.   ECOLOGICAL APPLICATIONS

Patterns of Population Structure and Environmental Associations to Aridity Across the Range of Loblolly Pine (Pinus taeda L., Pinaceae)

(2010) A. J. Eckert et al.   GENETICS

Using Environmental Correlations to Identify Loci Underlying Local Adaptation

(2010) G. Coop et al.   GENETICS

Prediction of Genetic Values of Quantitative Traits in Plant Breeding Using Pedigree and Molecular Markers

(2010) J. Crossa et al.   GENETICS

Molecular Footprints of Local Adaptation in Two Mediterranean Conifers

(2010) D. Grivet et al.   MOLECULAR BIOLOGY AND EVOLUTION

Postglacial history of a widespread conifer produces inverse clines in selective neutrality tests

(2010) J. A. HOLLIDAY et al.   MOLECULAR ECOLOGY

Spurious correlations and inference in landscape genetics

(2010) SAMUEL A. CUSHMAN et al.   MOLECULAR ECOLOGY

Gene movement and genetic association with regional climate gradients in California valley oak (Quercus lobata Née) in the face of climate change

(2010) VICTORIA L. SORK et al.   MOLECULAR ECOLOGY

Common factors drive adaptive genetic variation at different spatial scales in Arabis alpina

(2010) S. MANEL et al.   MOLECULAR ECOLOGY

INTRODUCTION: Contributions of landscape genetics - approaches, insights, and future potential

(2010) VICTORIA L. SORK et al.   MOLECULAR ECOLOGY

Perspectives on the use of landscape genetics to detect genetic adaptive variation in the field

(2010) STÉPHANIE MANEL et al.   MOLECULAR ECOLOGY

Back to nature: ecological genomics of loblolly pine (Pinus taeda, Pinaceae)

(2010) ANDREW J. ECKERT et al.   MOLECULAR ECOLOGY

Landscape genetics: where are we now?

(2010) ANDREW STORFER et al.   MOLECULAR ECOLOGY

Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines

(2010) Susanna Atwell et al.   NATURE

Variance component model to account for sample structure in genome-wide association studies

(2010) Hyun Min Kang et al.   NATURE GENETICS

Towards identifying genes underlying ecologically relevant traits in Arabidopsis thaliana

(2010) Joy Bergelson et al.   NATURE REVIEWS GENETICS

Widespread, ecologically relevant genetic markers developed from association mapping of climate-related traits in Sitka spruce (Picea sitchensis)

(2010) Jason A. Holliday et al.   NEW PHYTOLOGIST

Statistical approaches in landscape genetics: an evaluation of methods for linking landscape and genetic data

(2009) Niko Balkenhol et al.   ECOGRAPHY

Multilocus Patterns of Nucleotide Diversity and Divergence Reveal Positive Selection at Candidate Genes Related to Cold Hardiness in Coastal Douglas Fir (Pseudotsuga menziesii var. menziesii)

(2009) A. J. Eckert et al.   GENETICS

Association Genetics of Coastal Douglas Fir ( Pseudotsuga menziesii var. menziesii , Pinaceae). I. Cold-Hardiness Related Traits

(2009) Andrew J. Eckert et al.   GENETICS

Estimating and controlling for spatial structure in the study of ecological communities

(2009) Pedro R. Peres-Neto et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Contrasting relations between diversity of candidate genes and variation of bud burst in natural and segregating populations of European oaks

(2009) J Derory et al.   HEREDITY

Local adaptation at the range peripheries of Sitka spruce

(2009) M. MIMURA et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Identifying future research needs in landscape genetics: where to from here?

(2009) Niko Balkenhol et al.   LANDSCAPE ECOLOGY

Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencing

(2009) Andreas Gnirke et al.   NATURE BIOTECHNOLOGY

Genetic and genomic approaches to assess adaptive genetic variation in plants: forest trees as a model

(2009) Oliver Gailing et al.   PHYSIOLOGIA PLANTARUM

Global depression in gene expression as a response to rapid thermal changes in vent mussels

(2009) I. Boutet et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Landscape Genetics

(2008) Rolf Holderegger et al.   BIOSCIENCE

FORWARD SELECTION OF EXPLANATORY VARIABLES

(2008) F. Guillaume Blanchet et al.   ECOLOGY

Adaptation, migration or extirpation: climate change outcomes for tree populations

(2008) Sally N. Aitken et al.   Evolutionary Applications

Nucleotide Polymorphism and Phenotypic Associations Within and Around the phytochrome B2 Locus in European Aspen (Populus tremula, Salicaceae)

(2008) P. K. Ingvarsson et al.   GENETICS

Association genetics in Pinus taeda L. II. Carbon isotope discrimination

(2008) S C González-Martínez et al.   HEREDITY

Global monitoring of autumn gene expression within and among phenotypically divergent populations of Sitka spruce (Picea sitchensis)

(2008) Jason A. Holliday et al.   NEW PHYTOLOGIST

Adaptations to Climate in Candidate Genes for Common Metabolic Disorders

(2008) Angela M. Hancock et al.   PLoS Genetics

"Contrasting Patterns of Selection at Pinus pinaster Ait. Drought Stress Candidate Genes as Revealed by Genetic Differentiation Analyses"

(2007) E. Eveno et al.   MOLECULAR BIOLOGY AND EVOLUTION

Conserving the evolutionary potential of California valley oak (Quercus lobataNée): a multivariate genetic approach to conservation planning

(2007) DELPHINE GRIVET et al.   MOLECULAR ECOLOGY