Expression profiling in Pinus radiata infected with Fusarium circinatum

PlantTFDB 4.0: toward a central hub for transcription factors and regulatory interactions in plants

(2016) Jinpu Jin et al.   NUCLEIC ACIDS RESEARCH

De novo transcriptome assembly and comprehensive expression profiling in Crocus sativus to gain insights into apocarotenoid biosynthesis

(2016) Mukesh Jain et al.   Scientific Reports

Combined de novo and genome guided assembly and annotation of the Pinus patula juvenile shoot transcriptome

(2015) Erik A. Visser et al.   BMC GENOMICS

Transcriptome-wide analysis supports environmental adaptations of two Pinus pinaster populations from contrasting habitats

(2015) Rafael A. Cañas et al.   BMC GENOMICS

The NAC transcription factor family in maritime pine (Pinus Pinaster): molecular regulation of two genes involved in stress responses

(2015) Ma Belén Pascual et al.   BMC PLANT BIOLOGY

Management of Fusarium diseases affecting conifers

(2015) Thomas R. Gordon et al.   CROP PROTECTION

Relative expression of seven candidate genes for pathogen resistance on Pinus radiata infected with Fusarium circinatum

(2015) Andrea Donoso et al.   PHYSIOLOGICAL AND MOLECULAR PLANT PATHOLOGY

Unique Features of the Loblolly Pine (Pinus taeda L.) Megagenome Revealed Through Sequence Annotation

(2014) J. L. Wegrzyn et al.   GENETICS

Development of a genetic linkage map for Pinus radiata and detection of pitch canker disease resistance associated QTLs

(2014) P. Moraga-Suazo et al.   TREES-STRUCTURE AND FUNCTION

Decoding the massive genome of loblolly pine using haploid DNA and novel assembly strategies

(2014) David B Neale et al.   GENOME BIOLOGY

Antimicrobial Defenses and Resistance in Forest Trees: Challenges and Perspectives in a Genomic Era

(2013) Andriy Kovalchuk et al.   Annual Review of Phytopathology

An estimate of the potential economic impact of pine pitch canker in Australia

(2013) David C. Cook et al.   AUSTRALIAN FORESTRY

Transcriptome analysis of Pinus monticola primary needles by RNA-seq provides novel insight into host resistance to Cronartium ribicola

(2013) Jun-Jun Liu et al.   BMC GENOMICS

Generation, functional annotation and comparative analysis of black spruce (Picea mariana) ESTs: an important conifer genomic resource

(2013) Ishminder K Mann et al.   BMC GENOMICS

Transcriptome characterisation of Pinus tabuliformis and evolution of genes in the Pinus phylogeny

(2013) Shi-Hui Niu et al.   BMC GENOMICS

Transcriptome resources and functional characterization of monoterpene synthases for two host species of the mountain pine beetle, lodgepole pine (Pinus contorta) and jack pine (Pinus banksiana)

(2013) Dawn E Hall et al.   BMC PLANT BIOLOGY

Spatial and temporal dynamics of the colonization ofPinus radiatabyFusarium circinatum, of conidiophora development in the pith and of traumatic resin duct formation

(2013) Noemí Martín-Rodrigues et al.   NEW PHYTOLOGIST

De novoassembly of maritime pine transcriptome: implications for forest breeding and biotechnology

(2013) Javier Canales et al.   PLANT BIOTECHNOLOGY JOURNAL

Terpene Down-Regulation Triggers Defense Responses in Transgenic Orange Leading to Resistance against Fungal Pathogens

(2013) A. Rodriguez et al.   PLANT PHYSIOLOGY

Insights into the Loblolly Pine Genome: Characterization of BAC and Fosmid Sequences

(2013) Jill L. Wegrzyn et al.   PLoS One

Designing a transcriptome next-generation sequencing project for a nonmodel plant species1

(2012) Susan R. Strickler et al.   AMERICAN JOURNAL OF BOTANY

A catalogue of putative unique transcripts from Douglas-fir (Pseudotsuga menziesii) based on 454 transcriptome sequencing of genetically diverse, drought stressed seedlings

(2012) Thomas Müller et al.   BMC GENOMICS

Chestnut resistance to the blight disease: insights from transcriptome analysis

(2012) Abdelali Barakat et al.   BMC PLANT BIOLOGY

Transcriptome profiling and in silico analysis of somatic embryos in Japanese larch (Larix leptolepis)

(2012) Yuan Zhang et al.   PLANT CELL REPORTS

Towards decoding the conifer giga-genome

(2012) John Mackay et al.   PLANT MOLECULAR BIOLOGY

NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data

(2012) Ravi K. Patel et al.   PLoS One

Hormone Crosstalk in Plant Disease and Defense: More Than Just JASMONATE-SALICYLATE Antagonism

(2011) Alexandre Robert-Seilaniantz et al.   Annual Review of Phytopathology

EuroPineDB: a high-coverage web database for maritime pine transcriptome

(2011) Noé Fernández-Pozo et al.   BMC GENOMICS

EST sequencing and gene expression profiling of defence-related genes from Persea americana infected with Phytophthora cinnamomi

(2011) Waheed Mahomed et al.   BMC PLANT BIOLOGY

Exploring plant transcriptomes using ultra high-throughput sequencing

(2011) L. Wang et al.   Briefings in Functional Genomics

Differential expression in RNA-seq: A matter of depth

(2011) S. Tarazona et al.   GENOME RESEARCH

Pre-Infection Behavior of the Pitch Canker Fungus Fusarium circinatum on Pine Stems

(2011) Vilakon Thoungchaleun et al.   Plant Pathology Journal

A White Spruce Gene Catalog for Conifer Genome Analyses

(2011) Philippe Rigault et al.   PLANT PHYSIOLOGY

Response of living tissues of Pinus sylvestris to the saprotrophic biocontrol fungus Phlebiopsis gigantea

(2011) H. Sun et al.   TREE PHYSIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data

(2010) Murray P Cox et al.   BMC BIOINFORMATICS

Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery

(2010) Thomas L Parchman et al.   BMC GENOMICS

Evidence for the occurrence of induced resistance to pitch canker, caused by Gibberella circinata (anamorph Fusarium circinatum), in populations of Pinus radiata

(2010) T. R. Gordon et al.   FOREST PATHOLOGY

Association Mapping of Quantitative Disease Resistance in a Natural Population of Loblolly Pine (Pinus taeda L.)

(2010) T. Quesada et al.   GENETICS

The superfamily of thaumatin-like proteins: its origin, evolution, and expression towards biological function

(2010) Jun-Jun Liu et al.   PLANT CELL REPORTS

Pathogenesis-related genes and proteins in forest tree species

(2010) Radha Veluthakkal et al.   TREES-STRUCTURE AND FUNCTION

Comparison of the transcriptomes of American chestnut (Castanea dentata) and Chinese chestnut (Castanea mollissima) in response to the chestnut blight infection

(2009) Abdelali Barakat et al.   BMC PLANT BIOLOGY

Poplar and Pathogen Interactions: Insights fromPopulusGenome-Wide Analyses of Resistance and Defense Gene Families and Gene Expression Profiling

(2009) Sébastien Duplessis et al.   CRITICAL REVIEWS IN PLANT SCIENCES

Transcriptome Profiling in Hybrid Poplar Following Interactions withMelampsoraRust Fungi

(2009) Aïda Azaiez et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Identification and characterization of differentially expressed genes from Fagus sylvatica roots after infection with Phytophthora citricola

(2009) Katja Schlink   PLANT CELL REPORTS

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Pitch canker caused byFusarium circinatum– a growing threat to pine plantations and forests worldwide

(2008) M. J. Wingfield et al.   AUSTRALASIAN PLANT PATHOLOGY

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

High-throughput functional annotation and data mining with the Blast2GO suite

(2008) S. Gotz et al.   NUCLEIC ACIDS RESEARCH