Forest tree genomics: growing resources and applications

Transcriptional profiles of the annual growth cycle in Populus deltoides

(2011) Sunchung Park et al.   TREE PHYSIOLOGY

Bioinformatic analysis of ESTs collected by Sanger and pyrosequencing methods for a keystone forest tree species: oak

(2010) Saneyoshi Ueno et al.   BMC GENOMICS

The Pinus taeda genome is characterized by diverse and highly diverged repetitive sequences

(2010) Allen Kovach et al.   BMC GENOMICS

Patterns of Population Structure and Environmental Associations to Aridity Across the Range of Loblolly Pine (Pinus taeda L., Pinaceae)

(2010) A. J. Eckert et al.   GENETICS

Back to nature: ecological genomics of loblolly pine (Pinus taeda, Pinaceae)

(2010) ANDREW J. ECKERT et al.   MOLECULAR ECOLOGY

Diurnal and circadian patterns of gene expression in the developing xylem of Eucalyptus trees

(2010) O.L. Solomon et al.   SOUTH AFRICAN JOURNAL OF BOTANY

Genomics of forest and ecosystem health in the Fagaceae: meeting report

(2010) Antoine Kremer et al.   Tree Genetics & Genomes

Positioning of the major locus for Puccinia psidii rust resistance (Ppr1) on the Eucalyptus reference map and its validation across unrelated pedigrees

(2010) Eva M. C. Mamani et al.   Tree Genetics & Genomes

A microarray-based method for the parallel analysis of genotypes and expression profiles of wood-forming tissues in Eucalyptus grandis

(2009) Eugenia Barros et al.   BMC BIOTECHNOLOGY

Dynamic changes in transcripts during regeneration of the secondary vascular system in Populus tomentosa Carr. revealed by cDNA microarrays

(2009) Minjie Wang et al.   BMC GENOMICS

Comparative SNP diversity among four Eucalyptus species for genes from secondary metabolite biosynthetic pathways

(2009) Carsten Külheim et al.   BMC GENOMICS

Generation and analysis of expressed sequence tags from six developing xylem libraries in Pinus radiata D. Don

(2009) Xinguo Li et al.   BMC GENOMICS

Targeted isolation, sequence assembly and characterization of two white spruce (Picea glauca) BAC clones for terpenoid synthase and cytochrome P450 genes involved in conifer defence reveal insights into a conifer genome

(2009) Björn Hamberger et al.   BMC PLANT BIOLOGY

Comparison of the transcriptomes of American chestnut (Castanea dentata) and Chinese chestnut (Castanea mollissima) in response to the chestnut blight infection

(2009) Abdelali Barakat et al.   BMC PLANT BIOLOGY

The cellulose synthase superfamily in fully sequenced plants and algae

(2009) Yanbin Yin et al.   BMC PLANT BIOLOGY

Multilocus Patterns of Nucleotide Diversity and Divergence Reveal Positive Selection at Candidate Genes Related to Cold Hardiness in Coastal Douglas Fir (Pseudotsuga menziesii var. menziesii)

(2009) A. J. Eckert et al.   GENETICS

Association Genetics of Coastal Douglas Fir ( Pseudotsuga menziesii var. menziesii , Pinaceae). I. Cold-Hardiness Related Traits

(2009) Andrew J. Eckert et al.   GENETICS

Selection on Nuclear Genes in a Pinus Phylogeny

(2009) A.E. Palmé et al.   MOLECULAR BIOLOGY AND EVOLUTION

Transcriptome Profiling in Hybrid Poplar Following Interactions withMelampsoraRust Fungi

(2009) Aïda Azaiez et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Patterns of polymorphism resulting from long-range colonization in the Mediterranean conifer Aleppo pine

(2009) Delphine Grivet et al.   NEW PHYTOLOGIST

Local and systemic transcriptome responses to herbivory and jasmonic acid in Populus

(2009) Benjamin A. Babst et al.   Tree Genetics & Genomes

Estimation of population structure in coastal Douglas-fir [Pseudotsuga menziesii (Mirb.) Franco var. menziesii] using allozyme and microsatellite markers

(2009) Konstantin V. Krutovsky et al.   Tree Genetics & Genomes

High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome

(2008) Evandro Novaes et al.   BMC GENOMICS

Transcriptional analysis of Pinus sylvestris roots challenged with the ectomycorrhizal fungus Laccaria bicolor

(2008) Gregory Heller et al.   BMC PLANT BIOLOGY

Population, quantitative and comparative genomics of adaptation in forest trees

(2008) David B Neale et al.   CURRENT OPINION IN PLANT BIOLOGY

Adaptation, migration or extirpation: climate change outcomes for tree populations

(2008) Sally N. Aitken et al.   Evolutionary Applications

Few Mendelian Genes Underlie the Quantitative Response of a Forest Tree, Eucalyptus globulus , to a Natural Fungal Epidemic

(2008) Jules S. Freeman et al.   GENETICS

Association genetics in Pinus taeda L. II. Carbon isotope discrimination

(2008) S C González-Martínez et al.   HEREDITY

Involvement of Pinus taeda MYB1 and MYB8 in phenylpropanoid metabolism and secondary cell wall biogenesis: a comparative in planta analysis

(2008) Claude Bomal et al.   JOURNAL OF EXPERIMENTAL BOTANY

Patterns of Divergence among Conifer ESTs and Polymorphism in Pinus sylvestris Identify Putative Selective Sweeps

(2008) A. E. Palme et al.   MOLECULAR BIOLOGY AND EVOLUTION

Scanning the genome for gene single nucleotide polymorphisms involved in adaptive population differentiation in white spruce

(2008) MARIE-CLAIRE NAMROUD et al.   MOLECULAR ECOLOGY

Comparative analysis of the transcriptomes ofPopulus trichocarpaandArabidopsis thalianasuggests extensive evolution of gene expression regulation in angiosperms

(2008) Tania Quesada et al.   NEW PHYTOLOGIST

Microgenomic analysis reveals cell type-specific gene expression patterns between ray and fusiform initials within the cambial meristem ofPopulus

(2008) Nadia Goué et al.   NEW PHYTOLOGIST

Gene expression inEucalyptusbranch wood with marked variation in cellulose microfibril orientation and lacking G-layers

(2008) Deyou Qiu et al.   NEW PHYTOLOGIST

Molecular and phenotypic profiling from the base to the crown in maritime pine wood-forming tissue

(2008) Jorge A.P. Paiva et al.   NEW PHYTOLOGIST

Modular gene expression in Poplar: a multilayer network approach

(2008) Andreas Grönlund et al.   NEW PHYTOLOGIST

Global monitoring of autumn gene expression within and among phenotypically divergent populations of Sitka spruce (Picea sitchensis)

(2008) Jason A. Holliday et al.   NEW PHYTOLOGIST

Priming defense genes and metabolites in hybrid poplar by the green leaf volatilecis-3-hexenyl acetate

(2008) Christopher J. Frost et al.   NEW PHYTOLOGIST

Identification of conserved core xylem gene sets: conifer cDNA microarray development, transcript profiling and computational analyses

(2008) Nathalie Pavy et al.   NEW PHYTOLOGIST

Differential Response of Gray Poplar Leaves and Roots Underpins Stress Adaptation during Hypoxia

(2008) J. Kreuzwieser et al.   PLANT PHYSIOLOGY

Identification of genes expressed during early somatic embryogenesis in Pinus radiata

(2008) Felipe Aquea et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Transcriptomic changes in wind-exposed poplar leaves are dependent on developmental stage

(2008) Silvia Fluch et al.   PLANTA

Overall Alteration of Circadian Clock Gene Expression in the Chestnut Cold Response

(2008) Cristian Ibañez et al.   PLoS One

Quantitative iTRAQ proteome and comparative transcriptome analysis of elicitor-induced Norway spruce (Picea abies) cells reveals elements of calcium signaling in the early conifer defense response

(2008) Dustin N. Lippert et al.   PROTEOMICS

Development and functional annotation of an 11,303-EST collection from Eucalyptus for studies of cold tolerance

(2008) Guylaine Keller et al.   Tree Genetics & Genomes

High-throughput genotyping and mapping of single nucleotide polymorphisms in loblolly pine (Pinus taeda L.)

(2008) Andrew J. Eckert et al.   Tree Genetics & Genomes

Search for nucleotide diversity patterns of local adaptation in dehydrins and other cold-related candidate genes in Scots pine (Pinus sylvestris L.)

(2008) Witold Wachowiak et al.   Tree Genetics & Genomes

"Contrasting Patterns of Selection at Pinus pinaster Ait. Drought Stress Candidate Genes as Revealed by Genetic Differentiation Analyses"

(2007) E. Eveno et al.   MOLECULAR BIOLOGY AND EVOLUTION