System-Level and Granger Network Analysis of Integrated Proteomic and Metabolomic Dynamics Identifies Key Points of Grape Berry Development at the Interface of Primary and Secondary Metabolism

Transcriptome and metabolite profiling reveals that prolonged drought modulates the phenylpropanoid and terpenoid pathway in white grapes (Vitis vinifera L.)

(2016) Stefania Savoi et al.   BMC PLANT BIOLOGY

The grapevine VvibZIPC22 transcription factor is involved in the regulation of flavonoid biosynthesis

(2016) Giulia Malacarne et al.   JOURNAL OF EXPERIMENTAL BOTANY

The photomorphogenic factors UV-B RECEPTOR 1, ELONGATED HYPOCOTYL 5, and HY5 HOMOLOGUE are part of the UV-B signalling pathway in grapevine and mediate flavonol accumulation in response to the environment

(2016) Rodrigo Loyola et al.   JOURNAL OF EXPERIMENTAL BOTANY

GC–MS metabolic profiling of Cabernet Sauvignon and Merlot cultivars during grapevine berry development and network analysis reveals a stage- and cultivar-dependent connectivity of primary metabolites

(2016) Alvaro Cuadros-Inostroza et al.   Metabolomics

Functional Characterization of a Dihydroflavanol 4-Reductase from the Fiber of Upland Cotton (Gossypium hirsutum)

(2016) Le Wang et al.   MOLECULES

System level analysis of cacao seed ripening reveals a sequential interplay of primary and secondary metabolism leading to polyphenol accumulation and preparation of stress resistance

(2016) Lei Wang et al.   PLANT JOURNAL

Quantitative phosphoproteomics reveals the role of the AMPK plant ortholog SnRK1 as a metabolic master regulator under energy deprivation

(2016) Ella Nukarinen et al.   Scientific Reports

Metabolomic and Proteomic Profiles Reveal the Dynamics of Primary Metabolism during Seed Development of Lotus (Nelumbo nucifera)

(2016) Lei Wang et al.   Frontiers in Plant Science

HPLC–DAD–ESI-MS/MS screening of bioactive components from Rhus coriaria L. (Sumac) fruits

(2015) Ibrahim M. Abu-Reidah et al.   FOOD CHEMISTRY

Metabolite and proteome changes during the ripening of Syrah and Cabernet Sauvignon grape varieties cultured in a nontraditional wine region in Brazil

(2015) Karina Fraige et al.   Journal of Proteomics

Identification and Quantitative Characterization of PSORI-CM01, a Chinese Medicine Formula for Psoriasis Therapy, by Liquid Chromatography Coupled with an LTQ Orbitrap Mass Spectrometer

(2015) Shao-Dan Chen et al.   MOLECULES

Metabolite profiling elucidates communalities and differences in the polyphenol biosynthetic pathways of red and white Muscat genotypes

(2015) Asfaw Degu et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

The Balance of Expression of Dihydroflavonol 4-reductase and Flavonol Synthase Regulates Flavonoid Biosynthesis and Red Foliage Coloration in Crabapples

(2015) Ji Tian et al.   Scientific Reports

Comparison of accumulation of stilbene compounds and stilbene related gene expression in two grape berries irradiated with different light sources

(2015) Soon Young Ahn et al.   Horticulture Environment and Biotechnology

Study of Grape Polyphenols by Liquid Chromatography-High-Resolution Mass Spectrometry (UHPLC/QTOF) and Suspect Screening Analysis

(2015) Riccardo Flamini et al.   Journal of Analytical Methods in Chemistry

Metabolite profiling and transcript analysis reveal specificities in the response of a berry derived cell culture to abiotic stresses

(2015) Biruk Ayenew et al.   Frontiers in Plant Science

Accumulation of stilbene compounds and induction of related gene expression by hairy vetch and ryegrass extracts in grape berries

(2015) Md. Islam et al.   BIOLOGIA

Changes in the composition of phenolic compounds and antioxidant properties of grapevine roots and leaves (Vitis vinifera L.) under continuous of long-term drought stress

(2014) A. Król et al.   ACTA PHYSIOLOGIAE PLANTARUM

System-level network analysis of nitrogen starvation and recovery in Chlamydomonas reinhardtii reveals potential new targets for increased lipid accumulation

(2014) Luis Valledor et al.   Biotechnology for Biofuels

Metabolite and transcript profiling of berry skin during fruit development elucidates differential regulation between Cabernet Sauvignon and Shiraz cultivars at branching points in the polyphenol pathway

(2014) Asfaw Degu et al.   BMC PLANT BIOLOGY

Transcriptome sequencing and metabolite analysis reveals the role of delphinidin metabolism in flower colour in grape hyacinth

(2014) Qian Lou et al.   JOURNAL OF EXPERIMENTAL BOTANY

ProteomeXchange provides globally coordinated proteomics data submission and dissemination

(2014) Juan A Vizcaíno et al.   NATURE BIOTECHNOLOGY

Integrated Network Analysis Identifies Fight-Club Nodes as a Class of Hubs Encompassing Key Putative Switch Genes That Induce Major Transcriptome Reprogramming during Grapevine Development

(2014) Maria Concetta Palumbo et al.   PLANT CELL

Genome-Wide Transcriptional Profiles of the Berry Skin of Two Red Grape Cultivars (Vitis vinifera) in Which Anthocyanin Synthesis Is Sunlight-Dependent or -Independent

(2014) Ben-Hong Wu et al.   PLoS One

Hybrid Electronic Tongues Applied to the Quality Control of Wines

(2014) Manuel Gutiérrez-Capitán et al.   Journal of Sensors

Characterization of phenolic constituents in Lithocarpus polystachyus

(2013) Ya Zhao et al.   Analytical Methods

Proteomic analysis of kidney and protective effects of grape seed procyanidin B2 in db/db mice indicate MFG-E8 as a key molecule in the development of diabetic nephropathy

(2013) Zhen Zhang et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE

Downregulated Lipid Metabolism in Differentiated Murine Adipocytes by Procyanidins from Defatted Grape Seed Meal

(2013) Younghwa KIM et al.   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

Metabolite profiling and network analysis reveal coordinated changes in grapevine water stress response

(2013) Uri Hochberg et al.   BMC PLANT BIOLOGY

Changes of flavonol synthase and flavonol contents during grape berry development

(2013) Fang Fang et al.   EUROPEAN FOOD RESEARCH AND TECHNOLOGY

Metabolic profiling reveals coordinated switches in primary carbohydrate metabolism in grape berry (Vitis vinifera L.), a non-climacteric fleshy fruit

(2013) Zhan Wu Dai et al.   JOURNAL OF EXPERIMENTAL BOTANY

Red Grape Seed Extract Improves Lipid Profiles and Decreases Oxidized Low-Density Lipoprotein in Patients with Mild Hyperlipidemia

(2013) Seyed-Mostafa Razavi et al.   JOURNAL OF MEDICINAL FOOD

Cell-specific Analysis of the Tomato Pollen Proteome from Pollen Mother Cell to Mature Pollen Provides Evidence for Developmental Priming

(2013) Palak Chaturvedi et al.   JOURNAL OF PROTEOME RESEARCH

iTRAQ-Based Quantitative Proteomics of Developing and Ripening Muscadine Grape Berry

(2013) Devaiah Kambiranda et al.   JOURNAL OF PROTEOME RESEARCH

Systemic Cold Stress Adaptation ofChlamydomonas reinhardtii

(2013) Luis Valledor et al.   MOLECULAR & CELLULAR PROTEOMICS

Comprehensive Cell-specific Protein Analysis in Early and Late Pollen Development from Diploid Microsporocytes to Pollen Tube Growth

(2013) Till Ischebeck et al.   MOLECULAR & CELLULAR PROTEOMICS

Search for Transcriptional and Metabolic Markers of Grape Pre-Ripening and Ripening and Insights into Specific Aroma Development in Three Portuguese Cultivars

(2013) Patricia Agudelo-Romero et al.   PLoS One

Molecular Cloning and Characterization of Three Genes Encoding Dihydroflavonol-4-Reductase from Ginkgo biloba in Anthocyanin Biosynthetic Pathway

(2013) Cheng Hua et al.   PLoS One

Functional Characterization of Dihydroflavonol-4-Reductase in Anthocyanin Biosynthesis of Purple Sweet Potato Underlies the Direct Evidence of Anthocyanins Function against Abiotic Stresses

(2013) Hongxia Wang et al.   PLoS One

Identification of new flavan-3-ol monoglycosides by UHPLC-ESI-Q-TOF in grapes and wine

(2012) Adéline Delcambre et al.   JOURNAL OF MASS SPECTROMETRY

Comparative proteomic analysis of early somatic and zygotic embryogenesis in Theobroma cacao L.

(2012) Alexandre Mboene Noah et al.   Journal of Proteomics

COVAIN: a toolbox for uni- and multivariate statistics, time-series and correlation network analysis and inverse estimation of the differential Jacobian from metabolomics covariance data

(2012) Xiaoliang Sun et al.   Metabolomics

Phytochemical composition of Potentilla anserina L. analyzed by an integrative GC-MS and LC-MS metabolomics platform

(2012) Angela Mari et al.   Metabolomics

Granger causality in integrated GC–MS and LC–MS metabolomics data reveals the interface of primary and secondary metabolism

(2012) Hannes Doerfler et al.   Metabolomics

Anthocyanins and Their Variation in Red Wines I. Monomeric Anthocyanins and Their Color Expression

(2012) Fei He et al.   MOLECULES

Grapevine Phenolic Compounds in Xylem Sap and Tissues Are Significantly Altered During Infection byXylella fastidiosa

(2012) Christopher M. Wallis et al.   PHYTOPATHOLOGY

Characterization of Sugars and Organic Acids in Commercial Varieties of Table Grapes

(2012) Pablo Muñoz-Robredo et al.   Chilean Journal of Agricultural Research

Transcript and metabolite analysis in Trincadeira cultivar reveals novel information regarding the dynamics of grape ripening

(2011) Ana M Fortes et al.   BMC PLANT BIOLOGY

Berry skin development in Norton grape: Distinct patterns of transcriptional regulation and flavonoid biosynthesis

(2011) Mohammad B Ali et al.   BMC PLANT BIOLOGY

Stability of the anthocyanins extracted from residues of the wine industry

(2011) Edmar Clemente et al.   Food Science and Technology

A DIGE-based quantitative proteomic analysis of grape berry flesh development and ripening reveals key events in sugar and organic acid metabolism

(2011) Maria José Martínez-Esteso et al.   JOURNAL OF EXPERIMENTAL BOTANY

Changes of Polyphenols, Sugars, and Organic Acid in 5 Vitis Genotypes during Berry Ripening

(2011) Zhenchang Liang et al.   JOURNAL OF FOOD SCIENCE

Transcriptome changes in grapevine (Vitis vinifera L.) cv. Malbec leaves induced by ultraviolet-B radiation

(2010) Mariela A Pontin et al.   BMC PLANT BIOLOGY

Modulation of flavonoid biosynthetic pathway genes and anthocyanins due to virus infection in grapevine (Vitis vinifera L.) leaves

(2010) Linga R Gutha et al.   BMC PLANT BIOLOGY

Monitoring biochemical changes during grape berry development in Portuguese cultivars by NMR spectroscopy

(2010) Kashif Ali et al.   FOOD CHEMISTRY

Sensory, Chemical, and Electronic Tongue Assessment of Micro-oxygenated Wines and Oak Chip Maceration: Assessing the Commonality of Analytical Techniques

(2010) Leigh M. Schmidtke et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

The Simultaneous Repression of CCR and CAD, Two Enzymes of the Lignin Biosynthetic Pathway, Results in Sterility and Dwarfism in Arabidopsis thaliana

(2010) Johanne Thévenin et al.   Molecular Plant

Biosynthesis of Anthocyanins and Their Regulation in Colored Grapes

(2010) Fei He et al.   MOLECULES

Metabolic Pathway Relationships Revealed by an Integrative Analysis of the Transcriptional and Metabolic Temperature Stress-Response Dynamics in Yeast

(2010) Dirk Walther et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Identification of Putative Stage-Specific Grapevine Berry Biomarkers and Omics Data Integration into Networks

(2010) A. Zamboni et al.   PLANT PHYSIOLOGY

Bioactive non-coloured polyphenols content of grapes, wines and vinification by-products: Evaluation of the antioxidant activities of their extracts

(2009) Maria Anastasiadi et al.   FOOD RESEARCH INTERNATIONAL

Red-Color Related Phenolic Composition of Garnacha Tintorera (Vitis viniferaL.) Grapes and Red Wines

(2009) Noelia Castillo-Muñoz et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Stilbene synthase gene transfer caused alterations in the phenylpropanoid metabolism of transgenic strawberry (Fragaria×ananassa)

(2009) Kati Hanhineva et al.   JOURNAL OF EXPERIMENTAL BOTANY

The Grapevine R2R3-MYB Transcription Factor VvMYBF1 Regulates Flavonol Synthesis in Developing Grape Berries

(2009) S. Czemmel et al.   PLANT PHYSIOLOGY

Proteome changes in the skin of the grape cultivar Barbera among different stages of ripening

(2008) Alfredo S Negri et al.   BMC GENOMICS

Anthocyanin composition and content in grape berry skin in Vitis germplasm

(2008) Zhenchang Liang et al.   FOOD CHEMISTRY

Effect of grape antioxidant dietary fiber on the lipid oxidation of raw and cooked chicken hamburgers

(2008) S.G. Sáyago-Ayerdi et al.   LWT-FOOD SCIENCE AND TECHNOLOGY

Integration of Metabolomic and Proteomic Phenotypes

(2008) Stefanie Wienkoop et al.   MOLECULAR & CELLULAR PROTEOMICS

The Transcription Factor VvMYB5b Contributes to the Regulation of Anthocyanin and Proanthocyanidin Biosynthesis in Developing Grape Berries

(2008) L. Deluc et al.   PLANT PHYSIOLOGY

A rapid approach for phenotype-screening and database independent detection of cSNP/protein polymorphism using mass accuracy precursor alignment

(2008) Wolfgang Hoehenwarter et al.   PROTEOMICS