System level analysis of cacao seed ripening reveals a sequential interplay of primary and secondary metabolism leading to polyphenol accumulation and preparation of stress resistance

Application of 1H NMR for the characterisation of cocoa beans of different geographical origins and fermentation levels

(2014) Augusta Caligiani et al.   FOOD CHEMISTRY

Oligomeric Cocoa Procyanidins Possess Enhanced Bioactivity Compared to Monomeric and Polymeric Cocoa Procyanidins for Preventing the Development of Obesity, Insulin Resistance, and Impaired Glucose Tolerance during High-Fat Feeding

(2014) Melanie R. Dorenkott et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

ProteomeXchange provides globally coordinated proteomics data submission and dissemination

(2014) Juan A Vizcaíno et al.   NATURE BIOTECHNOLOGY

A universal protocol for the combined isolation of metabolites, DNA, long RNAs, small RNAs, and proteins from plants and microorganisms

(2014) Luis Valledor et al.   PLANT JOURNAL

Sparsity as Cellular Objective to Infer Directed Metabolic Networks from Steady-State Metabolome Data: A Theoretical Analysis

(2014) Melik Öksüz et al.   PLoS One

Solving the Differential Biochemical Jacobian from Metabolomics Covariance Data

(2014) Thomas Nägele et al.   PLoS One

mzGroupAnalyzer-Predicting Pathways and Novel Chemical Structures from Untargeted High-Throughput Metabolomics Data

(2014) Hannes Doerfler et al.   PLoS One

The role of photosynthesis and amino acid metabolism in the energy status during seed development

(2014) Gad Galili et al.   Frontiers in Plant Science

Perturbing the metabolic dynamics of myo-inositol in developing Brassica napus seeds through in vivo methylation impacts its utilization as phytate precursor and affects downstream metabolic pathways

(2013) Jinzhuo Dong et al.   BMC PLANT BIOLOGY

Phytochemical genomics — a new trend

(2013) Kazuki Saito   CURRENT OPINION IN PLANT BIOLOGY

Discrimination of Cocoa Beans According to Geographical Origin by Electronic Tongue and Multivariate Algorithms

(2013) Ernest Teye et al.   Food Analytical Methods

Cell-specific Analysis of the Tomato Pollen Proteome from Pollen Mother Cell to Mature Pollen Provides Evidence for Developmental Priming

(2013) Palak Chaturvedi et al.   JOURNAL OF PROTEOME RESEARCH

Comprehensive Cell-specific Protein Analysis in Early and Late Pollen Development from Diploid Microsporocytes to Pollen Tube Growth

(2013) Till Ischebeck et al.   MOLECULAR & CELLULAR PROTEOMICS

GoMapMan: integration, consolidation and visualization of plant gene annotations within the MapMan ontology

(2013) Živa Ramšak et al.   NUCLEIC ACIDS RESEARCH

An alternative pathway contributes to phenylalanine biosynthesis in plants via a cytosolic tyrosine:phenylpyruvate aminotransferase

(2013) Heejin Yoo et al.   Nature Communications

Regulation of cell division and expansion by sugar and auxin signaling

(2013) Lu Wang et al.   Frontiers in Plant Science

The Shikimate Pathway and Aromatic Amino Acid Biosynthesis in Plants

(2012) Hiroshi Maeda et al.   Annual Review of Plant Biology

Profiles of Phenolic Compounds and Purine Alkaloids during the Development of Seeds of Theobroma cacao cv. Trinitario

(2012) Gema Pereira-Caro et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Characterization of cocoa liquors by GC-MS and LC-MS/MS: focus on alkylpyrazines and flavanols

(2012) Emanuele Magi et al.   JOURNAL OF MASS SPECTROMETRY

Comparative proteomic analysis of early somatic and zygotic embryogenesis in Theobroma cacao L.

(2012) Alexandre Mboene Noah et al.   Journal of Proteomics

COVAIN: a toolbox for uni- and multivariate statistics, time-series and correlation network analysis and inverse estimation of the differential Jacobian from metabolomics covariance data

(2012) Xiaoliang Sun et al.   Metabolomics

Phytochemical composition of Potentilla anserina L. analyzed by an integrative GC-MS and LC-MS metabolomics platform

(2012) Angela Mari et al.   Metabolomics

Granger causality in integrated GC–MS and LC–MS metabolomics data reveals the interface of primary and secondary metabolism

(2012) Hannes Doerfler et al.   Metabolomics

MetaboLights—an open-access general-purpose repository for metabolomics studies and associated meta-data

(2012) Kenneth Haug et al.   NUCLEIC ACIDS RESEARCH

Pyrazine alkaloids via dimerization of amino acid-derived α-amino aldehydes: biomimetic synthesis of 2,5-diisopropylpyrazine, 2,5-bis(3-indolylmethyl)pyrazine and actinopolymorphol C

(2012) Sandhya Badrinarayanan et al.   ORGANIC & BIOMOLECULAR CHEMISTRY

Unpredictability of metabolism—the key role of metabolomics science in combination with next-generation genome sequencing

(2011) Wolfram Weckwerth   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Green systems biology — From single genomes, proteomes and metabolomes to ecosystems research and biotechnology

(2011) Wolfram Weckwerth   Journal of Proteomics

From Amino Acid to Glucosinolate Biosynthesis: Protein Sequence Changes in the Evolution of Methylthioalkylmalate Synthase inArabidopsis

(2011) Jan-Willem de Kraker et al.   PLANT CELL

Dynamics of volatile and non-volatile compounds in cocoa (Theobroma cacao L.) during fermentation and drying processes using principal components analysis

(2010) J. Rodriguez-Campos et al.   FOOD RESEARCH INTERNATIONAL

Uptake and Partitioning of Amino Acids and Peptides

(2010) Mechthild Tegeder et al.   Molecular Plant

New Insights into the Shikimate and Aromatic Amino Acids Biosynthesis Pathways in Plants

(2010) Vered Tzin et al.   Molecular Plant

Prephenate aminotransferase directs plant phenylalanine biosynthesis via arogenate

(2010) Hiroshi Maeda et al.   Nature Chemical Biology

The genome of Theobroma cacao

(2010) Xavier Argout et al.   NATURE GENETICS

Altered Xylem-Phloem Transfer of Amino Acids Affects Metabolism and Leads to Increased Seed Yield and Oil Content in Arabidopsis

(2010) L. Zhang et al.   PLANT CELL

Metabolomics Unravel Contrasting Effects of Biodiversity on the Performance of Individual Plant Species

(2010) Christian Scherling et al.   PLoS One

Metabolomics: an integral technique in systems biology

(2010) Wolfram Weckwerth   Bioanalysis

Differences between the content of phenolic compounds in Criollo, Forastero and Trinitario cocoa seed (Theobroma cacao L.)

(2009) Silke Elwers et al.   EUROPEAN FOOD RESEARCH AND TECHNOLOGY

Efficient isolation of major procyanidin A-type dimers from peanut skins and B-type dimers from grape seeds

(2009) Maaike M. Appeldoorn et al.   FOOD CHEMISTRY

Effect of farm and industrial processing on the amino acid profile of cocoa beans

(2009) E.I. Adeyeye et al.   FOOD CHEMISTRY

Screening Antioxidants Using LC-MS: Case Study with Cocoa

(2009) Angela I. Calderón et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Deciphering Transcriptional and Metabolic Networks Associated with Lysine Metabolism during Arabidopsis Seed Development

(2009) R. Angelovici et al.   PLANT PHYSIOLOGY

Integration of Metabolomic and Proteomic Phenotypes

(2008) Stefanie Wienkoop et al.   MOLECULAR & CELLULAR PROTEOMICS

Barley Grain Maturation and Germination: Metabolic Pathway and Regulatory Network Commonalities and Differences Highlighted by New MapMan/PageMan Profiling Tools

(2008) N. Sreenivasulu et al.   PLANT PHYSIOLOGY

A rapid approach for phenotype-screening and database independent detection of cSNP/protein polymorphism using mass accuracy precursor alignment

(2008) Wolfgang Hoehenwarter et al.   PROTEOMICS