Quantitative phosphoproteomics reveals the role of the AMPK plant ortholog SnRK1 as a metabolic master regulator under energy deprivation

An evolutionary perspective of AMPK–TOR signaling in the three domains of life

(2016) Valentin Roustan et al.   JOURNAL OF EXPERIMENTAL BOTANY

SnRK1-triggered switch of bZIP63 dimerization mediates the low-energy response in plants

(2015) Andrea Mair et al.   eLife

Boron nitride as desalting material in combination with phosphopeptide enrichment in shotgun proteomics

(2014) Takeshi Furuhashi et al.   ANALYTICAL BIOCHEMISTRY

The Role of Target of Rapamycin Signaling Networks in Plant Growth and Metabolism

(2014) Y. Xiong et al.   PLANT PHYSIOLOGY

A Complex Containing SNF1-Related Kinase (SnRK1) and Adenosine Kinase in Arabidopsis

(2014) Gireesha Mohannath et al.   PLoS One

Solving the Differential Biochemical Jacobian from Metabolomics Covariance Data

(2014) Thomas Nägele et al.   PLoS One

Mechanisms of regulation of SNF1/AMPK/SnRK1 protein kinases

(2014) Pierre Crozet et al.   Frontiers in Plant Science

Mathematical modeling reveals that metabolic feedback regulation of SnRK1 and hexokinase is sufficient to control sugar homeostasis from energy depletion to full recovery

(2014) Thomas Nägele et al.   Frontiers in Plant Science

The low energy signaling network

(2014) Filipa Tomé et al.   Frontiers in Plant Science

Eukaryotic initiation factor 5A dephosphorylation is required for translational arrest in stationary phase cells

(2013) Janete Chung et al.   BIOCHEMICAL JOURNAL

mTOR direct interactions with Rheb-GTPase and raptor: sub-cellular localization using fluorescence lifetime imaging

(2013) Rahul B Yadav et al.   BMC CELL BIOLOGY

PGRL1 Is the Elusive Ferredoxin-Plastoquinone Reductase in Photosynthetic Cyclic Electron Flow

(2013) Alexander P. Hertle et al.   MOLECULAR CELL

Differential Regulation of Carbon Partitioning by the Central Growth Regulator Target of Rapamycin (TOR)

(2013) Yi Zhang et al.   Molecular Plant

Using ProtMAX to create high-mass-accuracy precursor alignments from label-free quantitative mass spectrometry data generated in shotgun proteomics experiments

(2013) Volker Egelhofer et al.   Nature Protocols

Arabidopsis CURVATURE THYLAKOID1 Proteins Modify Thylakoid Architecture by Inducing Membrane Curvature

(2013) U. Armbruster et al.   PLANT CELL

Photosynthetic Control of Arabidopsis Leaf Cytoplasmic Translation Initiation by Protein Phosphorylation

(2013) Edouard Boex-Fontvieille et al.   PLoS One

Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action

(2013) P. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identification of the Phosphorylated Residues in TveIF5A by Mass Spectrometry

(2013) Laura Itzel Quintas-Granados et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

DanteR: an extensible R-based tool for quantitative analysis of -omics data

(2012) Tom Taverner et al.   BIOINFORMATICS

Sensing nutrient and energy status by SnRK1 and TOR kinases

(2012) Christophe Robaglia et al.   CURRENT OPINION IN PLANT BIOLOGY

COVAIN: a toolbox for uni- and multivariate statistics, time-series and correlation network analysis and inverse estimation of the differential Jacobian from metabolomics covariance data

(2012) Xiaoliang Sun et al.   Metabolomics

Granger causality in integrated GC–MS and LC–MS metabolomics data reveals the interface of primary and secondary metabolism

(2012) Hannes Doerfler et al.   Metabolomics

Identification of Novelin vivoMAP Kinase Substrates inArabidopsis thalianaThrough Use of Tandem Metal Oxide Affinity Chromatography

(2012) Wolfgang Hoehenwarter et al.   MOLECULAR & CELLULAR PROTEOMICS

Platform-independent and Label-free Quantitation of Proteomic Data Using MS1 Extracted Ion Chromatograms in Skyline

(2012) Birgit Schilling et al.   MOLECULAR & CELLULAR PROTEOMICS

Possible dual regulatory circuits involving AtS6K1 in the regulation of plant cell cycle and growth

(2012) Yun-jeong Shin et al.   MOLECULES AND CELLS

Fiji: an open-source platform for biological-image analysis

(2012) Johannes Schindelin et al.   NATURE METHODS

Target of Rapamycin Signaling Regulates Metabolism, Growth, and Life Span in Arabidopsis

(2012) M. Ren et al.   PLANT CELL

Regulatory Functions of SnRK1 in Stress-Responsive Gene Expression and in Plant Growth and Development

(2012) Y.-H. Cho et al.   PLANT PHYSIOLOGY

Inhibition of SnRK1 by metabolites: Tissue-dependent effects and cooperative inhibition by glucose 1-phosphate in combination with trehalose 6-phosphate

(2012) Cátia Nunes et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

P3DB: An Integrated Database for Plant Protein Phosphorylation

(2012) Qiuming Yao et al.   Frontiers in Plant Science

Unpredictability of metabolism—the key role of metabolomics science in combination with next-generation genome sequencing

(2011) Wolfram Weckwerth   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Regulation of plant growth and metabolism by the TOR kinase

(2011) Thomas Dobrenel et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

The AMPK/SNF1/SnRK1 fuel gauge and energy regulator: structure, function and regulation

(2011) Ruben Ghillebert et al.   FEBS Journal

AMP-activated protein kinase--an energy sensor that regulates all aspects of cell function

(2011) D. G. Hardie   GENES & DEVELOPMENT

Rapamycin and Glucose-Target of Rapamycin (TOR) Protein Signaling in Plants

(2011) Yan Xiong et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Universal and Confident Phosphorylation Site Localization Using phosphoRS

(2011) Thomas Taus et al.   JOURNAL OF PROTEOME RESEARCH

Andromeda: A Peptide Search Engine Integrated into the MaxQuant Environment

(2011) Jürgen Cox et al.   JOURNAL OF PROTEOME RESEARCH

Phosphorylation of maize eukaryotic translation initiation factor on Ser2 by catalytic subunit CK2

(2011) Elżbieta Lewandowska-Gnatowska et al.   MOLECULAR AND CELLULAR BIOCHEMISTRY

Structure of mammalian AMPK and its regulation by ADP

(2011) Bing Xiao et al.   NATURE

High Light Induced Disassembly of Photosystem II Supercomplexes in Arabidopsis Requires STN7-Dependent Phosphorylation of CP29

(2011) Rikard Fristedt et al.   PLoS One

Eukaryotic translation initiation factor (eIF) 5A stimulates protein synthesis in Saccharomyces cerevisiae

(2011) A. Henderson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

mTOR Signaling

(2011) M. Laplante et al.   Cold Spring Harbor Perspectives in Biology

Dynamics of reversible protein phosphorylation in thylakoids of flowering plants: The roles of STN7, STN8 and TAP38

(2010) Paolo Pesaresi et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Arabidopsis S6 kinase mutants display chromosome instability and altered RBR1–E2F pathway activity

(2010) Rossana Henriques et al.   EMBO JOURNAL

Cross-phosphorylation between Arabidopsis thaliana Sucrose Nonfermenting 1-related Protein Kinase 1 (AtSnRK1) and Its Activating Kinase (AtSnAK) Determines Their Catalytic Activities

(2010) Pierre Crozet et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Energy Signaling in the Regulation of Gene Expression during Stress

(2010) Elena Baena-González   Molecular Plant

Genetic analysis of pathway regulation for enhancing branched-chain amino acid biosynthesis in plants

(2010) Hao Chen et al.   PLANT JOURNAL

Snf1-related protein kinases (SnRKs) act within an intricate network that links metabolic and stress signalling in plants

(2009) Nigel G. Halford et al.   BIOCHEMICAL JOURNAL

Phosphorylation of Maize Eukaryotic Translation Initiation Factor 5A (eIF5A) by Casein Kinase 2

(2009) Maja Łebska et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Molecular mechanisms of mTOR-mediated translational control

(2009) Xiaoju Max Ma et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Inhibition of SNF1-Related Protein Kinase1 Activity and Regulation of Metabolic Pathways by Trehalose-6-Phosphate

(2009) Y. Zhang et al.   PLANT PHYSIOLOGY

Trehalose Metabolism and Signaling

(2008) Matthew J. Paul et al.   Annual Review of Plant Biology

Intrinsically Unstructured Phosphoprotein TSP9 Regulates Light Harvesting inArabidopsis thaliana†

(2008) Rikard Fristedt et al.   BIOCHEMISTRY

AMPK Phosphorylation of Raptor Mediates a Metabolic Checkpoint

(2008) Dana M. Gwinn et al.   MOLECULAR CELL

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

(2008) Jürgen Cox et al.   NATURE BIOTECHNOLOGY

Chloroplast Outer Envelope Protein CHUP1 Is Essential for Chloroplast Anchorage to the Plasma Membrane and Chloroplast Movement

(2008) K. Oikawa et al.   PLANT PHYSIOLOGY