Selective sweep suggests transcriptional regulation may underliePlasmodium vivaxresilience to malaria control measures in Cambodia
Published 2016 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Selective sweep suggests transcriptional regulation may underliePlasmodium vivaxresilience to malaria control measures in Cambodia
Authors
Keywords
-
Journal
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Volume 113, Issue 50, Pages E8096-E8105
Publisher
Proceedings of the National Academy of Sciences
Online
2016-11-29
DOI
10.1073/pnas.1608828113
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Coala: an R framework for coalescent simulation
- (2016) Paul R. Staab et al. BIOINFORMATICS
- Microsatellite genotyping and genome-wide single nucleotide polymorphism-based indices of Plasmodium falciparum diversity within clinical infections
- (2016) Lee Murray et al. MALARIA JOURNAL
- Declining malaria transmission in rural Amazon: changing epidemiology and challenges to achieve elimination
- (2016) Sheila Vitor-Silva et al. MALARIA JOURNAL
- Population genomics studies identify signatures of global dispersal and drug resistance in Plasmodium vivax
- (2016) Daniel N Hupalo et al. NATURE GENETICS
- Genomes of cryptic chimpanzee Plasmodium species reveal key evolutionary events leading to human malaria
- (2016) Sesh A. Sundararaman et al. Nature Communications
- Complexity of Infection and Genetic Diversity in Cambodian Plasmodium vivax
- (2016) Lindsey R. Friedrich et al. PLoS Neglected Tropical Diseases
- Integrated analysis of the Plasmodium species transcriptome
- (2016) Regina Hoo et al. EBioMedicine
- New insights into the Plasmodium vivax transcriptome using RNA-Seq
- (2016) Lei Zhu et al. Scientific Reports
- Increasing Prevalence of Plasmodium vivax Among Febrile Patients in Nouakchott, Mauritania
- (2015) Mohamed Salem Ould Ahmedou Salem et al. AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE
- Expression of Plasmodium vivaxcrt-oIs Related to Parasite Stage but NotEx VivoChloroquine Susceptibility
- (2015) Zuleima Pava et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- Comparison of genomic signatures of selection on Plasmodium falciparum between different regions of a country with high malaria endemicity
- (2015) Craig W. Duffy et al. BMC GENOMICS
- Plasmodium vivax Liver Stage Development and Hypnozoite Persistence in Human Liver-Chimeric Mice
- (2015) Sebastian A. Mikolajczak et al. Cell Host & Microbe
- Using Amplicon Deep Sequencing to Detect Genetic Signatures ofPlasmodium vivaxRelapse
- (2015) Jessica T. Lin et al. JOURNAL OF INFECTIOUS DISEASES
- Dihydroartemisinin-piperaquine failure associated with a triple mutant including kelch13 C580Y in Cambodia: an observational cohort study
- (2015) Michele D Spring et al. LANCET INFECTIOUS DISEASES
- Population Structure Shapes Copy Number Variation in Malaria Parasites
- (2015) Ian H. Cheeseman et al. MOLECULAR BIOLOGY AND EVOLUTION
- Evaluating the performance of selection scans to detect selective sweeps in domestic dogs
- (2015) Florencia Schlamp et al. MOLECULAR ECOLOGY
- Genetic architecture of artemisinin-resistant Plasmodium falciparum
- (2015) Olivo Miotto et al. NATURE GENETICS
- Modeling malaria genomics reveals transmission decline and rebound in Senegal
- (2015) Rachel F. Daniels et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Global transcriptional repression: An initial and essential step forPlasmodiumsexual development
- (2015) Masao Yuda et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Contrasting Transmission Dynamics of Co-endemic Plasmodium vivax and P. falciparum: Implications for Malaria Control and Elimination
- (2015) Rintis Noviyanti et al. PLoS Neglected Tropical Diseases
- Plasmodium vivax Populations Are More Genetically Diverse and Less Structured than Sympatric Plasmodium falciparum Populations
- (2015) Charlie Jennison et al. PLoS Neglected Tropical Diseases
- No more monkeying around: primate malaria model systems are key to understanding Plasmodium vivax liver-stage biology, hypnozoites, and relapses
- (2015) Chester Joyner et al. Frontiers in Microbiology
- Sampling strategies for frequency spectrum-based population genomic inference
- (2014) John D Robinson et al. BMC EVOLUTIONARY BIOLOGY
- Editing thePlasmodium vivaxGenome, Using Zinc-Finger Nucleases
- (2014) Roberto R. Moraes Barros et al. JOURNAL OF INFECTIOUS DISEASES
- Whole-Genome Scans Provide Evidence of Adaptive Evolution in Malawian Plasmodium falciparum Isolates
- (2014) Harold Ocholla et al. JOURNAL OF INFECTIOUS DISEASES
- Distinct patterns of diversity, population structure and evolution in the AMA1 genes of sympatric Plasmodium falciparum and Plasmodium vivax populations of Papua New Guinea from an area of similarly high transmission
- (2014) Alicia Arnott et al. MALARIA JOURNAL
- Spatial and temporal epidemiology of clinical malaria in Cambodia 2004–2013
- (2014) Richard J Maude et al. MALARIA JOURNAL
- The Plasmodium bottleneck: malaria parasite losses in the mosquito vector
- (2014) Ryan C Smith et al. MEMORIAS DO INSTITUTO OSWALDO CRUZ
- On Detecting Incomplete Soft or Hard Selective Sweeps Using Haplotype Structure
- (2014) Anna Ferrer-Admetlla et al. MOLECULAR BIOLOGY AND EVOLUTION
- selscan: An Efficient Multithreaded Program to Perform EHH-Based Scans for Positive Selection
- (2014) Z. A. Szpiech et al. MOLECULAR BIOLOGY AND EVOLUTION
- Genome-Wide Analysis of Selection on the Malaria Parasite Plasmodium falciparum in West African Populations of Differing Infection Endemicity
- (2014) Victor A. Mobegi et al. MOLECULAR BIOLOGY AND EVOLUTION
- Malarial liver parasites awaken in culture
- (2014) John W Barnwell et al. NATURE MEDICINE
- Persistence and activation of malaria hypnozoites in long-term primary hepatocyte cultures
- (2014) Laurent Dembélé et al. NATURE MEDICINE
- Recurrent bottlenecks in the malaria life cycle obscure signals of positive selection
- (2014) HSIAO-HAN CHANG et al. PARASITOLOGY
- Expression Levels of pvcrt-o and pvmdr-1 Are Associated with Chloroquine Resistance and Severe Plasmodium vivax Malaria in Patients of the Brazilian Amazon
- (2014) Gisely C. Melo et al. PLoS One
- Population transcriptomics of human malaria parasites reveals the mechanism of artemisinin resistance
- (2014) S. Mok et al. SCIENCE
- Differing Patterns of Selection and Geospatial Genetic Diversity within Two Leading Plasmodium vivax Candidate Vaccine Antigens
- (2014) Christian M. Parobek et al. PLoS Neglected Tropical Diseases
- LUMPY: a probabilistic framework for structural variant discovery
- (2014) Ryan M Layer et al. GENOME BIOLOGY
- Plasmodium vivax Isolates from Cambodia and Thailand Show High Genetic Complexity and Distinct Patterns of P. vivax Multidrug Resistance Gene 1 (pvmdr1) Polymorphisms
- (2013) Jessica T. Lin et al. AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE
- Higher microsatellite diversity in Plasmodium vivax than in sympatric Plasmodium falciparum populations in Pursat, Western Cambodia
- (2013) Pamela Orjuela-Sánchez et al. EXPERIMENTAL PARASITOLOGY
- Changes in Malaria Parasite Drug Resistance in an Endemic Population Over a 25-Year Period With Resulting Genomic Evidence of Selection
- (2013) Davis C. Nwakanma et al. JOURNAL OF INFECTIOUS DISEASES
- Population genetics of Plasmodium falciparum and Plasmodium vivax and asymptomatic malaria in Temotu Province, Solomon Islands
- (2013) Karen-Ann Gray et al. MALARIA JOURNAL
- Outdoor malaria transmission in forested villages of Cambodia
- (2013) Lies Durnez et al. MALARIA JOURNAL
- Structural polymorphism in the promoter ofpfmrp2confersPlasmodium falciparumtolerance to quinoline drugs
- (2013) Sachel Mok et al. MOLECULAR MICROBIOLOGY
- Targeting Plasmodium PI(4)K to eliminate malaria
- (2013) Case W. McNamara et al. NATURE
- Multiple populations of artemisinin-resistant Plasmodium falciparum in Cambodia
- (2013) Olivo Miotto et al. NATURE GENETICS
- Transposon mutagenesis identifies genes essential for Plasmodium falciparum gametocytogenesis
- (2013) H. Ikadai et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Malaria life cycle intensifies both natural selection and random genetic drift
- (2013) H.-H. Chang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Diversity, host switching and evolution of Plasmodium vivax infecting African great apes
- (2013) F. Prugnolle et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Human Malaria Parasite Pfs47 Gene Mediates Evasion of the Mosquito Immune System
- (2013) A. Molina-Cruz et al. SCIENCE
- Whole Genome Sequencing of Field Isolates Reveals a Common Duplication of the Duffy Binding Protein Gene in Malagasy Plasmodium vivax Strains
- (2013) Didier Menard et al. PLoS Neglected Tropical Diseases
- De Novo Assembly of a Field Isolate Genome Reveals Novel Plasmodium vivax Erythrocyte Invasion Genes
- (2013) James Hester et al. PLoS Neglected Tropical Diseases
- Snakemake--a scalable bioinformatics workflow engine
- (2012) J. Koster et al. BIOINFORMATICS
- Development of humanized mouse models to study human malaria parasite infection
- (2012) Ashley M Vaughan et al. Future Microbiology
- SNP Genotyping Identifies New Signatures of Selection in a Deep Sample of West African Plasmodium falciparum Malaria Parasites
- (2012) Alfred Amambua-Ngwa et al. MOLECULAR BIOLOGY AND EVOLUTION
- Genomic Sequencing of Plasmodium falciparum Malaria Parasites from Senegal Reveals the Demographic History of the Population
- (2012) Hsiao-Han Chang et al. MOLECULAR BIOLOGY AND EVOLUTION
- Population genetic correlates of declining transmission in a human pathogen
- (2012) Standwell C. Nkhoma et al. MOLECULAR ECOLOGY
- Analysis of Plasmodium falciparum diversity in natural infections by deep sequencing
- (2012) Magnus Manske et al. NATURE
- The malaria parasite Plasmodium vivax exhibits greater genetic diversity than Plasmodium falciparum
- (2012) Daniel E Neafsey et al. NATURE GENETICS
- Characterization of Within-Host Plasmodium falciparum Diversity Using Next-Generation Sequence Data
- (2012) Sarah Auburn et al. PLoS One
- Sequence-based association and selection scans identify drug resistance loci in the Plasmodium falciparum malaria parasite
- (2012) D. J. Park et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Malaria in the Greater Mekong Subregion: Heterogeneity and complexity
- (2011) Liwang Cui et al. ACTA TROPICA
- adegenet 1.3-1: new tools for the analysis of genome-wide SNP data
- (2011) Thibaut Jombart et al. BIOINFORMATICS
- Epidemiology and Infectivity of Plasmodium falciparum and Plasmodium vivax Gametocytes in Relation to Malaria Control and Elimination
- (2011) T. Bousema et al. CLINICAL MICROBIOLOGY REVIEWS
- A framework for variation discovery and genotyping using next-generation DNA sequencing data
- (2011) Mark A DePristo et al. NATURE GENETICS
- The dominant Anopheles vectors of human malaria in the Asia-Pacific region: occurrence data, distribution maps and bionomic précis
- (2011) Marianne E Sinka et al. Parasites & Vectors
- The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
- (2010) A. McKenna et al. GENOME RESEARCH
- Measuring the efficacy of anti-malarial drugs in vivo: quantitative PCR measurement of parasite clearance
- (2010) Khalid B Beshir et al. MALARIA JOURNAL
- The Apicomplexan AP2 family: Integral factors regulating Plasmodium development
- (2010) Heather J. Painter et al. MOLECULAR AND BIOCHEMICAL PARASITOLOGY
- Plasmodium falciparum genome-wide scans for positive selection, recombination hot spots and resistance to antimalarial drugs
- (2010) Jianbing Mu et al. NATURE GENETICS
- Whole-genome sequencing and microarray analysis of ex vivo Plasmodium vivax reveal selective pressure on putative drug resistance genes
- (2010) N. V. Dharia et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Bottleneck effects on vaccine-candidate antigen diversity of malaria parasites in Thailand
- (2010) Somchai Jongwutiwes et al. VACCINE
- A unique phosphatidylinositol 4-phosphate 5-kinase is activated by ADP-ribosylation factor in Plasmodium falciparum
- (2009) Werner Leber et al. INTERNATIONAL JOURNAL FOR PARASITOLOGY
- Increased expression levels of the pvcrt-o and pvmdr1 genes in a patient with severe Plasmodium vivax malaria
- (2009) Carmen Fernández-Becerra et al. MALARIA JOURNAL
- Artemisinin Resistance inPlasmodium falciparumMalaria
- (2009) Arjen M. Dondorp et al. NEW ENGLAND JOURNAL OF MEDICINE
- Inferring the Joint Demographic History of Multiple Populations from Multidimensional SNP Frequency Data
- (2009) Ryan N. Gutenkunst et al. PLoS Genetics
- ama1 Genes of Sympatric Plasmodium vivax and P. falciparum from Venezuela Differ Significantly in Genetic Diversity and Recombination Frequency
- (2008) Rosalynn L. Ord et al. PLoS One
- The transcriptome of Plasmodium vivax reveals divergence and diversity of transcriptional regulation in malaria parasites
- (2008) Z. Bozdech et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Regulatory Hotspots in the Malaria Parasite Genome Dictate Transcriptional Variation
- (2008) Joseph M Gonzales et al. PLOS BIOLOGY
- The Population Genetics of dN/dS
- (2008) Sergey Kryazhimskiy et al. PLoS Genetics
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now