New insights into the Plasmodium vivax transcriptome using RNA-Seq

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

The path of malaria vaccine development: challenges and perspectives

(2014) C. Arama et al.   JOURNAL OF INTERNAL MEDICINE

Antigenicity and immunogenicity of a novel Plasmodium vivax circumsporozoite derived synthetic vaccine construct

(2014) Nora Céspedes et al.   VACCINE

Malaria Vaccine Development and How External Forces Shape It: An Overview

(2014) Veronique Lorenz et al.   International Journal of Environmental Research and Public Health

A High Resolution Case Study of a Patient with Recurrent Plasmodium vivax Infections Shows That Relapses Were Caused by Meiotic Siblings

(2014) Andrew Taylor Bright et al.   PLoS Neglected Tropical Diseases

A new computational approach redefines the subtelomeric vir superfamily of Plasmodium vivax

(2013) Francisco Javier Lopez et al.   BMC GENOMICS

Evidence and Implications of Mortality Associated with Acute Plasmodium vivax Malaria

(2013) J. Kevin Baird   CLINICAL MICROBIOLOGY REVIEWS

Revealing natural antisense transcripts from Plasmodium vivax isolates: Evidence of genome regulation in complicated malaria

(2013) P.A. Boopathi et al.   INFECTION GENETICS AND EVOLUTION

Alternative splicing: a pivotal step between eukaryotic transcription and translation

(2013) Alberto R. Kornblihtt et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Diversity, host switching and evolution of Plasmodium vivax infecting African great apes

(2013) F. Prugnolle et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-wide mapping of polyadenylation sites in fission yeast reveals widespread alternative polyadenylation

(2013) Juan Mata   RNA Biology

Suppressive chemoprophylaxis invites avoidable risk of serious illness caused by Plasmodium vivax malaria

(2013) J. Kevin Baird   Travel Medicine and Infectious Disease

Neutral Polymorphisms in Putative Housekeeping Genes and Tandem Repeats Unravels the Population Genetics and Evolutionary History of Plasmodium vivax in India

(2013) Surendra K. Prajapati et al.   PLoS Neglected Tropical Diseases

De Novo Assembly of a Field Isolate Genome Reveals Novel Plasmodium vivax Erythrocyte Invasion Genes

(2013) James Hester et al.   PLoS Neglected Tropical Diseases

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Assessing the genetic diversity of the vir genes in Indian Plasmodium vivax population

(2012) P. Gupta et al.   ACTA TROPICA

Primaquine radical cure of Plasmodium vivax: a critical review of the literature

(2012) George K John et al.   MALARIA JOURNAL

The malaria parasite Plasmodium vivax exhibits greater genetic diversity than Plasmodium falciparum

(2012) Daniel E Neafsey et al.   NATURE GENETICS

Plasmodium vivax gametocyte protein Pvs230 is a transmission-blocking vaccine candidate

(2012) Mayumi Tachibana et al.   VACCINE

Whole Genome Sequencing of Field Isolates Provides Robust Characterization of Genetic Diversity in Plasmodium vivax

(2012) Ernest R. Chan et al.   PLoS Neglected Tropical Diseases

Directional gene expression and antisense transcripts in sexual and asexual stages of Plasmodium falciparum

(2011) María J López-Barragán et al.   BMC GENOMICS

Genome-wide characterization of transcriptional start sites in humans by integrative transcriptome analysis

(2011) R. Yamashita et al.   GENOME RESEARCH

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

RNA-Seq analysis of splicing in Plasmodium falciparum uncovers new splice junctions, alternative splicing and splicing of antisense transcripts

(2011) K. Sorber et al.   NUCLEIC ACIDS RESEARCH

Genomic and chromatin signals underlying transcription start-site selection

(2011) Eivind Valen et al.   TRENDS IN GENETICS

Genome Comparison of Human and Non-Human Malaria Parasites Reveals Species Subset-Specific Genes Potentially Linked to Human Disease

(2011) Christian Frech et al.   PLoS Computational Biology

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

Single-nucleotide polymorphism, linkage disequilibrium and geographic structure in the malaria parasite Plasmodium vivax: prospects for genome-wide association studies

(2010) Pamela Orjuela-Sánchez et al.   BMC GENETICS

Comprehensive Polyadenylation Site Maps in Yeast and Human Reveal Pervasive Alternative Polyadenylation

(2010) Fatih Ozsolak et al.   CELL

New insights into the blood-stage transcriptome ofPlasmodium falciparumusing RNA-Seq

(2010) Thomas D. Otto et al.   MOLECULAR MICROBIOLOGY

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Whole-genome sequencing and microarray analysis of ex vivo Plasmodium vivax reveal selective pressure on putative drug resistance genes

(2010) N. V. Dharia et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Landscape of C. elegans 3'UTRs

(2010) M. Mangone et al.   SCIENCE

A Systems-Based Analysis of Plasmodium vivax Lifecycle Transcription from Human to Mosquito

(2010) Scott J. Westenberger et al.   PLoS Neglected Tropical Diseases

Identification and Genome-Wide Prediction of DNA Binding Specificities for the ApiAP2 Family of Regulators from the Malaria Parasite

(2010) Tracey L. Campbell et al.   PLoS Pathogens

A Major Role for the Plasmodium falciparum ApiAP2 Protein PfSIP2 in Chromosome End Biology

(2010) Christian Flueck et al.   PLoS Pathogens

Artemether–lumefantrine in the treatment of uncomplicated Plasmodium falciparum malaria

(2010) Stephan Ehrhardt   Therapeutics and Clinical Risk Management

A small-scale systematic analysis of alternative splicing in Plasmodium falciparum

(2009) Hideyuki Iriko et al.   PARASITOLOGY INTERNATIONAL

Control of gene expression in Plasmodium falciparum – Ten years on

(2008) Paul Horrocks et al.   MOLECULAR AND BIOCHEMICAL PARASITOLOGY

The genome of the simian and human malaria parasite Plasmodium knowlesi

(2008) A. Pain et al.   NATURE

Comparative genomics of the neglected human malaria parasite Plasmodium vivax

(2008) Jane M. Carlton et al.   NATURE

Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution

(2008) Brian T. Wilhelm et al.   NATURE

Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing

(2008) Qun Pan et al.   NATURE GENETICS

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

PlasmoDB: a functional genomic database for malaria parasites

(2008) C. Aurrecoechea et al.   NUCLEIC ACIDS RESEARCH

Specific DNA-binding by Apicomplexan AP2 transcription factors

(2008) E. K. De Silva et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The transcriptome of Plasmodium vivax reveals divergence and diversity of transcriptional regulation in malaria parasites

(2008) Z. Bozdech et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing

(2008) U. Nagalakshmi et al.   SCIENCE

Quantitative protein expression profiling reveals extensive post-transcriptional regulation and post-translational modifications in schizont-stage malaria parasites

(2008) Bernardo J Foth et al.   GENOME BIOLOGY