Population genomics studies identify signatures of global dispersal and drug resistance in Plasmodium vivax

Population Genetics, Evolutionary Genomics, and Genome-Wide Studies of Malaria: A View Across the International Centers of Excellence for Malaria Research

(2015) Jane M. Carlton et al.   AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE

Genome-Scale Protein Microarray Comparison of Human Antibody Responses in Plasmodium vivax Relapse and Reinfection

(2015) Raul Chuquiyauri et al.   AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE

A molecular mechanism of artemisinin resistance in Plasmodium falciparum malaria

(2015) Alassane Mbengue et al.   NATURE

Modeling malaria genomics reveals transmission decline and rebound in Senegal

(2015) Rachel F. Daniels et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Development of a Single Nucleotide Polymorphism Barcode to Genotype Plasmodium vivax Infections

(2015) Mary Lynn Baniecki et al.   PLoS Neglected Tropical Diseases

Multiple Origins of Mutations in the mdr1 Gene—A Putative Marker of Chloroquine Resistance in P. vivax

(2015) Mette L. Schousboe et al.   PLoS Neglected Tropical Diseases

Plasmodium vivax Diversity and Population Structure across Four Continents

(2015) Cristian Koepfli et al.   PLoS Neglected Tropical Diseases

Using Mitochondrial Genome Sequences to Track the Origin of Imported Plasmodium vivax Infections Diagnosed in the United States

(2014) Priscila T. Rodrigues et al.   AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

The remarkable journey of adaptation of the Plasmodium falciparum malaria parasite to New World anopheline mosquitoes

(2014) Alvaro Molina-Cruz et al.   MEMORIAS DO INSTITUTO OSWALDO CRUZ

Automated Reconstruction of Whole-Genome Phylogenies from Short-Sequence Reads

(2014) Frederic Bertels et al.   MOLECULAR BIOLOGY AND EVOLUTION

The origin and diversification of the merozoite surface protein 3 (msp3) multi-gene family in Plasmodium vivax and related parasites

(2014) Benjamin L. Rice et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The Evolutionary History of Plasmodium vivax as Inferred from Mitochondrial Genomes: Parasite Genetic Diversity in the Americas

(2013) Jesse E. Taylor et al.   MOLECULAR BIOLOGY AND EVOLUTION

A molecular marker of artemisinin-resistant Plasmodium falciparum malaria

(2013) Frédéric Ariey et al.   NATURE

The Human Malaria Parasite Pfs47 Gene Mediates Evasion of the Mosquito Immune System

(2013) A. Molina-Cruz et al.   SCIENCE

Whole Genome Sequencing of Field Isolates Reveals a Common Duplication of the Duffy Binding Protein Gene in Malagasy Plasmodium vivax Strains

(2013) Didier Menard et al.   PLoS Neglected Tropical Diseases

A high-performance computing toolset for relatedness and principal component analysis of SNP data

(2012) X. Zheng et al.   BIOINFORMATICS

Evidence of purifying selection on merozoite surface protein 8 (MSP8) and 10 (MSP10) in Plasmodium spp.

(2012) M. Andreína Pacheco et al.   INFECTION GENETICS AND EVOLUTION

Plasmodium cynomolgi genome sequences provide insight into Plasmodium vivax and the monkey malaria clade

(2012) Shin-Ichiro Tachibana et al.   NATURE GENETICS

The malaria parasite Plasmodium vivax exhibits greater genetic diversity than Plasmodium falciparum

(2012) Daniel E Neafsey et al.   NATURE GENETICS

A Long Neglected World Malaria Map: Plasmodium vivax Endemicity in 2010

(2012) Peter W. Gething et al.   PLoS Neglected Tropical Diseases

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

The Origins of African Plasmodium vivax; Insights from Mitochondrial Genome Sequencing

(2011) Richard Culleton et al.   PLoS One

Hybrid selection for sequencing pathogen genomes from clinical samples

(2011) Alexandre Melnikov et al.   GENOME BIOLOGY

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Complete mtDNA genomes of Anopheles darlingi and an approach to anopheline divergence time

(2010) Marta Moreno et al.   MALARIA JOURNAL

Plasmodium vivax clinical malaria is commonly observed in Duffy-negative Malagasy people

(2010) D. Menard et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads

(2009) K. Ye et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

Reconstructing Indian population history

(2009) David Reich et al.   NATURE

Comparative genomics of the neglected human malaria parasite Plasmodium vivax

(2008) Jane M. Carlton et al.   NATURE

TRAP-like protein of Plasmodium sporozoites: linking gliding motility to host-cell traversal

(2008) Céline Lacroix et al.   TRENDS IN PARASITOLOGY