Coala: an R framework for coalescent simulation

scrm: efficiently simulating long sequences using the approximated coalescent with recombination

(2015) Paul R. Staab et al.   BIOINFORMATICS

Cosi2: an efficient simulator of exact and approximate coalescent with selection

(2014) Ilya Shlyakhter et al.   BIOINFORMATICS

Genetic Simulation Resources: a website for the registration and discovery of genetic data simulators

(2013) B. Peng et al.   BIOINFORMATICS

Why to account for finite sites in population genetic studies and how to do this with Jaatha 2.0

(2013) Lisha A. Mathew et al.   Ecology and Evolution

OmegaPlus: a scalable tool for rapid detection of selective sweeps in whole-genome datasets

(2012) N. Alachiotis et al.   BIOINFORMATICS

rehh: an R package to detect footprints of selection in genome-wide SNP data from haplotype structure

(2012) Mathieu Gautier et al.   BIOINFORMATICS

abc: an R package for approximate Bayesian computation (ABC)

(2012) Katalin Csilléry et al.   Methods in Ecology and Evolution

fastsimcoal: a continuous-time coalescent simulator of genomic diversity under arbitrarily complex evolutionary scenarios

(2011) Laurent Excoffier et al.   BIOINFORMATICS

Jaatha: a fast composite-likelihood approach to estimate demographic parameters

(2011) LISHA NADUVILEZHATH et al.   MOLECULAR ECOLOGY

MSMS: a coalescent simulation program including recombination, demographic structure and selection at a single locus

(2010) Gregory Ewing et al.   BIOINFORMATICS

Fast and flexible simulation of DNA sequence data

(2008) G. K. Chen et al.   GENOME RESEARCH