Impact of Heat Stress on Transposable Element Expression and Derived Small RNAs in Drosophila subobscura
Published 2023 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Impact of Heat Stress on Transposable Element Expression and Derived Small RNAs in Drosophila subobscura
Authors
Keywords
-
Journal
Genome Biology and Evolution
Volume 15, Issue 11, Pages -
Publisher
Oxford University Press (OUP)
Online
2023-10-18
DOI
10.1093/gbe/evad189
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- High stability of the epigenome in Drosophila interspecific hybrids
- (2022) Alejandra Bodelón et al. Genome Biology and Evolution
- Stress Resistance Traits under Different Thermal Conditions in Drosophila subobscura from Two Altitudes
- (2022) Katarina Erić et al. Insects
- Analysing high-throughput sequencing data in Python with HTSeq 2.0
- (2022) Givanna H Putri et al. BIOINFORMATICS
- srnaMapper: an optimal mapping tool for sRNA-Seq reads
- (2022) Matthias Zytnicki et al. BMC BIOINFORMATICS
- piRNA-mediated gene regulation and adaptation to sex-specific transposon expression in D. melanogaster male germline
- (2021) Peiwei Chen et al. GENES & DEVELOPMENT
- Comparative transcriptomics between Drosophila mojavensis and D. arizonae reveals transgressive gene expression and underexpression of spermatogenesis-related genes in hybrid testes
- (2021) Cecilia A. Banho et al. Scientific Reports
- The Worldwide Invasion of Drosophila suzukii Is Accompanied by a Large Increase of Transposable Element Load and a Small Number of Putatively Adaptive Insertions
- (2021) Vincent Mérel et al. MOLECULAR BIOLOGY AND EVOLUTION
- Large Drosophila germline piRNA clusters are evolutionarily labile and dispensable for transposon regulation
- (2021) Daniel Gebert et al. MOLECULAR CELL
- The Bogert effect, a factor in evolution
- (2021) Martha M. Muñoz EVOLUTION
- Evolutionary dynamics of piRNA clusters in Drosophila
- (2021) Filip Wierzbicki et al. MOLECULAR ECOLOGY
- Identification and Analysis of Small Interfering RNAs Associated With Heat Stress in Flowering Chinese Cabbage Using High-Throughput Sequencing
- (2021) Waqas Ahmed et al. Frontiers in Genetics
- Basal hsp70 expression levels do not explain adaptive variation of the warm- and cold-climate O3 + 4 + 7 and OST gene arrangements of Drosophila subobscura
- (2020) Marta Puig Giribets et al. BMC EVOLUTIONARY BIOLOGY
- Global warming and chromosomal inversion adaptation in isolated islands: Drosophila subobscura populations from Madeira
- (2020) Raquel Madrenas et al. ENTOMOLOGICAL SCIENCE
- Rapid sex-specific adaptation to high temperature in Drosophila
- (2020) Sheng-Kai Hsu et al. eLife
- Drosophila Interspecific Hybridization Causes a Deregulation of the piRNA Pathway Genes
- (2020) Víctor Gámez-Visairas et al. Genes
- piRNA and transposon dynamics in Drosophila: a female story
- (2020) Bastien Saint-Leandre et al. Genome Biology and Evolution
- Neural dysfunction correlates with heat coma and CTmax in Drosophila but does not set the boundaries for heat stress survival
- (2020) Lisa B. Jørgensen et al. JOURNAL OF EXPERIMENTAL BIOLOGY
- RepeatModeler2 for automated genomic discovery of transposable element families
- (2020) Jullien M. Flynn et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Genome-Wide Transcriptome and Metabolome Analyses Provide Novel Insights and Suggest a Sex-Specific Response to Heat Stress in Pigs
- (2020) Krishnamoorthy Srikanth et al. Genes
- Integrating GWAS and Transcriptomics to Identify the Molecular Underpinnings of Thermal Stress Responses in Drosophila melanogaster
- (2020) Melise C. Lecheta et al. Frontiers in Genetics
- Proteomics reveals sex-specific heat shock response of Baikal amphipod Eulimnogammarus cyaneus
- (2020) Daria Bedulina et al. SCIENCE OF THE TOTAL ENVIRONMENT
- UniProt: the universal protein knowledgebase in 2021
- (2020) et al. NUCLEIC ACIDS RESEARCH
- Long-read based assembly and synteny analysis of a reference Drosophila subobscura genome reveals signatures of structural evolution driven by inversions recombination-suppression effects
- (2019) Charikleia Karageorgiou et al. BMC GENOMICS
- The Hsp70 chaperone is a major player in stress-induced transposable element activation
- (2019) Ugo Cappucci et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Molecular dissection of a natural transposable element invasion
- (2018) Robert Kofler et al. GENOME RESEARCH
- Genetic variation in the shape of cold-survival curves in a single fly population suggests potential for selection from climate variability
- (2018) N. M. Teets et al. JOURNAL OF EVOLUTIONARY BIOLOGY
- Climatic adaptation of chromosomal inversions in Drosophila subobscura
- (2018) Maria Galludo et al. GENETICA
- Heavy-tailed prior distributions for sequence count data: removing the noise and preserving large differences
- (2018) Anqi Zhu et al. BIOINFORMATICS
- PIWI-interacting RNAs: small RNAs with big functions
- (2018) Deniz M. Ozata et al. NATURE REVIEWS GENETICS
- eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses
- (2018) Jaime Huerta-Cepas et al. NUCLEIC ACIDS RESEARCH
- Temperature-responsive miRNAs in Drosophila orchestrate adaptation to different ambient temperatures
- (2017) Isabel Fast et al. RNA
- Latitudinal clines in gene expression and cis-regulatory element variation in Drosophila melanogaster
- (2016) Punita Juneja et al. BMC GENOMICS
- The piRNA pathway is developmentally regulated during spermatogenesis inDrosophila
- (2016) Emilie Quénerch'du et al. RNA
- Gene expression changes in response to aging compared to heat stress, oxidative stress and ionizing radiation in Drosophila melanogaster
- (2016) Gary Landis et al. Aging-US
- piRNA-guided slicing of transposon transcripts enforces their transcriptional silencing via specifying the nuclear piRNA repertoire
- (2015) Kirsten-André Senti et al. GENES & DEVELOPMENT
- Repbase Update, a database of repetitive elements in eukaryotic genomes
- (2015) Weidong Bao et al. Mobile DNA
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- Population- and Sex-Biased Gene Expression in the Excretion Organs of Drosophila melanogaster
- (2014) Ann Kathrin Huylmans et al. G3-Genes Genomes Genetics
- Distinct features of the piRNA pathway in somatic and germ cells: from piRNA cluster transcription to piRNA processing and amplification
- (2014) Emmanuelle Théron et al. Mobile DNA
- “One code to find them all”: a perl tool to conveniently parse RepeatMasker output files
- (2014) Marc Bailly-Bechet et al. Mobile DNA
- The heat shock response: A case study of chromatin dynamics in gene regulation
- (2013) Sheila S. Teves et al. Biochemistry and Cell Biology
- Analysis of piRNA-Mediated Silencing of Active TEs in Drosophila melanogaster Suggests Limits on the Evolution of Host Genome Defense
- (2013) Erin S. Kelleher et al. MOLECULAR BIOLOGY AND EVOLUTION
- Variation of Gene Expression Associated with Colonisation of an Anthropized Environment: Comparison between African and European Populations of Drosophila simulans
- (2013) François Wurmser et al. PLoS One
- BEDOPS: high-performance genomic feature operations
- (2012) Shane Neph et al. BIOINFORMATICS
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
- proTRAC - a software for probabilistic piRNA cluster detection, visualization and analysis
- (2012) David Rosenkranz et al. BMC BIOINFORMATICS
- Population and sex differences in Drosophila melanogaster brain gene expression
- (2012) Ana Catalán et al. BMC GENOMICS
- Hsp70 protein levels and thermotolerance in Drosophila subobscura: a reassessment of the thermal co-adaptation hypothesis
- (2012) G. CALABRIA et al. JOURNAL OF EVOLUTIONARY BIOLOGY
- Streaming fragment assignment for real-time analysis of sequencing experiments
- (2012) Adam Roberts et al. NATURE METHODS
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- A systematic analysis ofDrosophilaTUDOR domain-containing proteins identifies Vreteno and the Tdrd12 family as essential primary piRNA pathway factors
- (2011) Dominik Handler et al. EMBO JOURNAL
- Chromatin-associated RNA interference components contribute to transcriptional regulation in Drosophila
- (2011) Filippo M. Cernilogar et al. NATURE
- Full-length transcriptome assembly from RNA-Seq data without a reference genome
- (2011) Manfred G Grabherr et al. NATURE BIOTECHNOLOGY
- Integrative genomics viewer
- (2011) James T Robinson et al. NATURE BIOTECHNOLOGY
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- Heat shock proteins and Drosophila aging
- (2010) John Tower EXPERIMENTAL GERONTOLOGY
- Hsp90 prevents phenotypic variation by suppressing the mutagenic activity of transposons
- (2010) Valeria Specchia et al. NATURE
- BLAST+: architecture and applications
- (2009) Christiam Camacho et al. BMC BIOINFORMATICS
- Somatic, germline and sex hierarchy regulated gene expression during Drosophila metamorphosis
- (2009) Matthew S Lebo et al. BMC GENOMICS
- Specialized piRNA Pathways Act in Germline and Somatic Tissues of the Drosophila Ovary
- (2009) Colin D. Malone et al. CELL
- Collapse of Germline piRNAs in the Absence of Argonaute3 Reveals Somatic piRNAs in Flies
- (2009) Chengjian Li et al. CELL
- CLINAL PATTERNS OF CHROMOSOMAL INVERSION POLYMORPHISMS INDROSOPHILA SUBOBSCURAARE PARTLY ASSOCIATED WITH THERMAL PREFERENCES AND HEAT STRESS RESISTANCE
- (2009) Carla Rego et al. EVOLUTION
- Trithorax requires Hsp90 for maintenance of active chromatin at sites of gene expression
- (2009) M. Tariq et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Database indexing for production MegaBLAST searches
- (2008) Aleksandr Morgulis et al. BIOINFORMATICS
- Distribution of the transposable elements bilbo and gypsy in original and colonizing populations of Drosophila subobscura
- (2008) María Pilar García Guerreiro et al. BMC EVOLUTIONARY BIOLOGY
- Drosophila endogenous small RNAs bind to Argonaute 2 in somatic cells
- (2008) Yoshinori Kawamura et al. NATURE
- An endogenous small interfering RNA pathway in Drosophila
- (2008) Benjamin Czech et al. NATURE
- Analyzing real-time PCR data by the comparative CT method
- (2008) Thomas D Schmittgen et al. Nature Protocols
- Endogenous siRNAs Derived from Transposons and mRNAs in Drosophila Somatic Cells
- (2008) M. Ghildiyal et al. SCIENCE
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now