Repbase Update, a database of repetitive elements in eukaryotic genomes

Spy: A New Group of Eukaryotic DNA Transposons without Target Site Duplications

(2014) Min-Jin Han et al.   Genome Biology and Evolution

Multiple Lineages of Ancient CR1 Retroposons Shaped the Early Genome Evolution of Amniotes

(2014) Alexander Suh et al.   Genome Biology and Evolution

PASTEC: An Automatic Transposable Element Classification Tool

(2014) Claire Hoede et al.   PLoS One

A Superfamily of DNA Transposons Targeting Multicopy Small RNA Genes

(2013) Kenji K. Kojima et al.   PLoS One

Horizontal Transposon Transfer in Eukarya: Detection, Bias, and Perspectives

(2012) Gabriel Luz Wallau et al.   Genome Biology and Evolution

Dfam: a database of repetitive DNA based on profile hidden Markov models

(2012) Travis J. Wheeler et al.   NUCLEIC ACIDS RESEARCH

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Zisupton--A Novel Superfamily of DNA Transposable Elements Recently Active in Fish

(2011) A. Bohne et al.   MOLECULAR BIOLOGY AND EVOLUTION

Considering Transposable Element Diversification in De Novo Annotation Approaches

(2011) Timothée Flutre et al.   PLoS One

The catalytic domain of all eukaryotic cut-and-paste transposase superfamilies

(2011) Y.-W. Yuan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Epigenetic histone modifications of human transposable elements: genome defense versus exaptation

(2010) Ahsan Huda et al.   Mobile DNA

Simple and fast classification of non-LTR retrotransposons based on phylogeny of their RT domain protein sequences

(2009) Vladimir V. Kapitonov et al.   GENE

Exploring Repetitive DNA Landscapes Using REPCLASS, a Tool That Automates the Classification of Transposable Elements in Eukaryotic Genomes

(2009) Cédric Feschotte et al.   Genome Biology and Evolution

New Superfamilies of Eukaryotic DNA Transposons and Their Internal Divisions

(2009) W. Bao et al.   MOLECULAR BIOLOGY AND EVOLUTION

A universal classification of eukaryotic transposable elements implemented in Repbase

(2008) Vladimir V. Kapitonov et al.   NATURE REVIEWS GENETICS

Empirical comparison of ab initio repeat finding programs

(2008) S. Saha et al.   NUCLEIC ACIDS RESEARCH

GtRNAdb: a database of transfer RNA genes detected in genomic sequence

(2008) P. P. Chan et al.   NUCLEIC ACIDS RESEARCH

Repeated horizontal transfer of a DNA transposon in mammals and other tetrapods

(2008) J. K. Pace et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA