Analysing high-throughput sequencing data in Python with HTSeq 2.0

HTSlib: C library for reading/writing high-throughput sequencing data

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SciPy 1.0: fundamental algorithms for scientific computing in Python

(2020) Pauli Virtanen et al.   NATURE METHODS

Array programming with NumPy

(2020) Charles R. Harris et al.   NATURE

Single-cell transcriptional dynamics of flavivirus infection

(2018) Fabio Zanini et al.   eLife

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Smart-seq2 for sensitive full-length transcriptome profiling in single cells

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Cython: The Best of Both Worlds

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