Latitudinal clines in gene expression and cis-regulatory element variation in Drosophila melanogaster

Secondary contact and local adaptation contribute to genome-wide patterns of clinal variation inDrosophila melanogaster

(2016) Alan O. Bergland et al.   MOLECULAR ECOLOGY

Population genomic analysis uncovers African and European admixture inDrosophila melanogasterpopulations from the south-eastern United States and Caribbean Islands

(2015) Joyce Y. Kao et al.   MOLECULAR ECOLOGY

Parallel Gene Expression Differences between Low and High Latitude Populations of Drosophila melanogaster and D. simulans

(2015) Li Zhao et al.   PLoS Genetics

Estimates of allele-specific expression in Drosophila with a single genome sequence and RNA-seq data

(2014) Andrew Quinn et al.   BIOINFORMATICS

Parallel Geographic Variation in Drosophila melanogaster

(2014) Josie A. Reinhardt et al.   GENETICS

Gene expression drives local adaptation in humans

(2013) H. B. Fraser   GENOME RESEARCH

Count-based differential expression analysis of RNA sequencing data using R and Bioconductor

(2013) Simon Anders et al.   Nature Protocols

Genome-wide patterns of latitudinal differentiation among populations ofDrosophila melanogasterfrom North America

(2012) Daniel K. Fabian et al.   MOLECULAR ECOLOGY

The Drosophila melanogaster Genetic Reference Panel

(2012) Trudy F. C. Mackay et al.   NATURE

Reciprocal transplants demonstrate strong adaptive differentiation of the model organism Arabidopsis thaliana in its native range

(2012) Jon Ågren et al.   NEW PHYTOLOGIST

Genome-Wide Transcription Analysis of Clinal Genetic Variation in Drosophila

(2012) Ying Chen et al.   PLoS One

Population transcriptomics of Drosophila melanogaster females

(2011) Lena Müller et al.   BMC GENOMICS

Signatures of Environmental Genetic Adaptation Pinpoint Pathogens as the Main Selective Pressure through Human Evolution

(2011) Matteo Fumagalli et al.   PLoS Genetics

Genomic Differentiation Between Temperate and Tropical Australian Populations of Drosophila melanogaster

(2010) B. Kolaczkowski et al.   GENETICS

Regulatory divergence in Drosophila revealed by mRNA-seq

(2010) C. J. McManus et al.   GENOME RESEARCH

Whole-Genome Expression Plasticity across Tropical and Temperate Drosophila melanogaster Populations from Eastern Australia

(2010) M. T. Levine et al.   MOLECULAR BIOLOGY AND EVOLUTION

VarScan: variant detection in massively parallel sequencing of individual and pooled samples

(2009) Daniel C. Koboldt et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists

(2009) Eran Eden et al.   BMC BIOINFORMATICS

Allele-specific expression assays using Solexa

(2009) Bradley J Main et al.   BMC GENOMICS

Global patterns of cis variation in human cells revealed by high-density allelic expression analysis

(2009) Bing Ge et al.   NATURE GENETICS

Digital RNA allelotyping reveals tissue-specific and allele-specific gene expression in human

(2009) Kun Zhang et al.   NATURE METHODS

Genomic Analysis of Adaptive Differentiation in Drosophila melanogaster

(2008) T. L. Turner et al.   GENETICS

An amino acid polymorphism in the couch potato gene forms the basis for climatic adaptation in Drosophila melanogaster

(2008) P. S. Schmidt et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Differential Allelic Expression in the Human Genome: A Robust Approach To Identify Genetic and Epigenetic Cis-Acting Mechanisms Regulating Gene Expression

(2008) David Serre et al.   PLoS Genetics