Genome-Wide Transcriptome and Metabolome Analyses Provide Novel Insights and Suggest a Sex-Specific Response to Heat Stress in Pigs

Integration of metabolomic and transcriptomic profiles to identify biomarkers in serum of lung cancer

(2019) Quan Sun et al.   JOURNAL OF CELLULAR BIOCHEMISTRY

A controlled heat stress during late gestation affects thermoregulation, productive performance, and metabolite profiles of primiparous sow

(2019) Jianwen He et al.   JOURNAL OF THERMAL BIOLOGY

Chronic Heat Stress Induces Acute Phase Responses and Serum Metabolome Changes in Finishing Pigs

(2019) Cui et al.   Animals

Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype

(2019) Daehwan Kim et al.   NATURE BIOTECHNOLOGY

Heat stress affects fecal microbial and metabolic alterations of primiparous sows during late gestation

(2019) Jianwen He et al.   Journal of Animal Science and Biotechnology

Cardiac and Skeletal Muscle Transcriptome Response to Heat Stress in Kenyan Chicken Ecotypes Adapted to Low and High Altitudes Reveal Differences in Thermal Tolerance and Stress Response

(2019) Krishnamoorthy Srikanth et al.   Frontiers in Genetics

Characterizing the acute heat stress response in gilts: I. Thermoregulatory and production variables

(2018) J T Seibert et al.   JOURNAL OF ANIMAL SCIENCE

Metabolomics of heat stress response in pig adipose tissue reveals alteration of phospholipid and fatty acid composition during heat stress1

(2018) Huan Qu et al.   JOURNAL OF ANIMAL SCIENCE

l-Glutamine Attenuates Apoptosis in Porcine Enterocytes by Regulating Glutathione-Related Redox Homeostasis

(2018) Ning Liu et al.   JOURNAL OF NUTRITION

Prolonged environment-induced hyperthermia alters autophagy in oxidative skeletal muscle in Sus scrofa

(2018) Shanthi Ganesan et al.   JOURNAL OF THERMAL BIOLOGY

MetaboAnalyst 4.0: towards more transparent and integrative metabolomics analysis

(2018) Jasmine Chong et al.   NUCLEIC ACIDS RESEARCH

Review: Adaptation of animals to heat stress

(2018) V. Sejian et al.   Animal

Transcriptome analysis and identification of significantly differentially expressed genes in Holstein calves subjected to severe thermal stress

(2017) Krishnamoorthy Srikanth et al.   INTERNATIONAL JOURNAL OF BIOMETEOROLOGY

Physiological mechanisms through which heat stress compromises reproduction in pigs

(2017) Jason W. Ross et al.   MOLECULAR REPRODUCTION AND DEVELOPMENT

1HNMR-Based metabolomic profiling method to develop plasma biomarkers for sensitivity to chronic heat stress in growing pigs

(2017) Samir Dou et al.   PLoS One

Liver transcriptome response to hyperthermic stress in three distinct chicken lines

(2016) Xi Lan et al.   BMC GENOMICS

Causes, consequences and biomarkers of stress in swine: an update

(2016) Silvia Martínez-Miró et al.   BMC Veterinary Research

Anti-leukaemic effects induced by APR-246 are dependent on induction of oxidative stress and the NFE2L2/HMOX1 axis that can be targeted by PI3K and mTOR inhibitors in acute myeloid leukaemia cells

(2016) Dina Ali et al.   BRITISH JOURNAL OF HAEMATOLOGY

Characterization of genes and pathways that respond to heat stress in Holstein calves through transcriptome analysis

(2016) Krishnamoorthy Srikanth et al.   CELL STRESS & CHAPERONES

Metabolic responses and “omics” technologies for elucidating the effects of heat stress in dairy cows

(2016) Li Min et al.   INTERNATIONAL JOURNAL OF BIOMETEOROLOGY

Transcriptome analysis reveals that constant heat stress modifies the metabolism and structure of the porcine longissimus dorsi skeletal muscle

(2016) Yue Hao et al.   MOLECULAR GENETICS AND GENOMICS

PRDX2 protects hepatocellular carcinoma SMMC-7721 cells from oxidative stress

(2016) Silei Zhou et al.   Oncology Letters

Genome-wide DNA methylation profiles changes associated with constant heat stress in pigs as measured by bisulfite sequencing

(2016) Yue Hao et al.   Scientific Reports

Time course of the response to ACTH in pig: biological and transcriptomic study

(2015) Valérie Sautron et al.   BMC GENOMICS

Efavirenz Causes Oxidative Stress, Endoplasmic Reticulum Stress, and Autophagy in Endothelial Cells

(2015) Marlene Weiß et al.   Cardiovascular Toxicology

Heat stress effects on livestock: molecular, cellular and metabolic aspects, a review

(2015) I. Belhadj Slimen et al.   JOURNAL OF ANIMAL PHYSIOLOGY AND ANIMAL NUTRITION

Physiological consequences of heat stress in pigs

(2015) J. W. Ross et al.   Animal Production Science

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

l-Cystathionine Inhibits the Mitochondria-Mediated Macrophage Apoptosis Induced by Oxidized Low Density Lipoprotein

(2014) Mingzhu Zhu et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Glycine Stimulates Protein Synthesis and Inhibits Oxidative Stress in Pig Small Intestinal Epithelial Cells

(2014) Weiwei Wang et al.   JOURNAL OF NUTRITION

svaseq: removing batch effects and other unwanted noise from sequencing data

(2014) Jeffrey T. Leek   NUCLEIC ACIDS RESEARCH

FOXO transcription factors: key regulators of cellular quality control

(2014) Ashley E. Webb et al.   TRENDS IN BIOCHEMICAL SCIENCES

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

(2013) Y. Liao et al.   BIOINFORMATICS

The effects of heat stress and plane of nutrition on metabolism in growing pigs1

(2013) S. C. Pearce et al.   JOURNAL OF ANIMAL SCIENCE

L-Threonine induces heat shock protein expression and decreases apoptosis in heat-stressed intestinal epithelial cells

(2013) Christine H. Baird et al.   NUTRITION

RNA-Seq reveals expression signatures of genes involved in oxygen transport, protein synthesis, folding, and degradation in response to heat stress in catfish

(2013) Shikai Liu et al.   PHYSIOLOGICAL GENOMICS

Rare Variants in theTREX1Gene and Susceptibility to Autoimmune Diseases

(2013) Nadia Barizzone et al.   Biomed Research International

Oxidative stress parameters and anti-apoptotic response to hydroxyl radicals in fish erythrocytes: Protective effects of glutamine, alanine, citrulline and proline

(2012) Hua-Tao Li et al.   AQUATIC TOXICOLOGY

Elucidating Molecular Networks That Either Affect or Respond to Plasma Cortisol Concentration in Target Tissues of Liver and Muscle

(2012) S. Ponsuksili et al.   GENETICS

Effects of Heat Stress on Postabsorptive Metabolism and Energetics

(2012) Lance H. Baumgard et al.   Annual Review of Animal Biosciences

Adaptation to hot climate and strategies to alleviate heat stress in livestock production

(2011) D. Renaudeau et al.   Animal

LRRK2 Mutant iPSC-Derived DA Neurons Demonstrate Increased Susceptibility to Oxidative Stress

(2011) Ha Nam Nguyen et al.   Cell Stem Cell

The Role of Oxidative Stress Response Revealed in Preconditioning Heat Stimulation in Skeletal Muscle of Rats

(2011) Po Jung Pan et al.   JOURNAL OF SURGICAL RESEARCH

Effects of heat stress on energetic metabolism in lactating Holstein cows1

(2010) J.B. Wheelock et al.   JOURNAL OF DAIRY SCIENCE

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks

(2009) Gabriela Bindea et al.   BIOINFORMATICS

A Single, Mild, Transient Scrotal Heat Stress Causes Hypoxia and Oxidative Stress in Mouse Testes, Which Induces Germ Cell Death1

(2009) Catriona Paul et al.   BIOLOGY OF REPRODUCTION

Expression of heat shock protein 90 (Hsp90) and transcription of its corresponding mRNA in broilers exposed to high temperature

(2009) Lei Lei et al.   BRITISH POULTRY SCIENCE

Metabolic characteristics and oxidative damage to skeletal muscle in broiler chickens exposed to chronic heat stress

(2009) M.A.K. Azad et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY

l-Tryptophan exhibits therapeutic function in a porcine model of dextran sodium sulfate (DSS)-induced colitis

(2009) Connie J. Kim et al.   JOURNAL OF NUTRITIONAL BIOCHEMISTRY

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Dietary arginine supplementation enhances antioxidative capacity and improves meat quality of finishing pigs

(2008) Xianyong Ma et al.   AMINO ACIDS

Adaptive antioxidant methionine accumulation in respiratory chain complexes explains the use of a deviant genetic code in mitochondria

(2008) A. Bender et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA