The Worldwide Invasion of Drosophila suzukii Is Accompanied by a Large Increase of Transposable Element Load and a Small Number of Putatively Adaptive Insertions

A whole-genome scan for association with invasion success in the fruit fly Drosophila suzukii using contrasts of allele frequencies corrected for population structure

(2020) Laure Olazcuaga et al.   MOLECULAR BIOLOGY AND EVOLUTION

Viral infection impacts transposable element transcript amounts in Drosophila

(2020) Marlène Roy et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomic Analysis of European Drosophila melanogaster Populations Reveals Longitudinal Structure, Continent-Wide Selection, and Previously Unknown DNA Viruses

(2020) Martin Kapun et al.   MOLECULAR BIOLOGY AND EVOLUTION

Near-chromosome level genome assembly of the fruit pest Drosophila suzukii using long-read sequencing

(2020) Mathilde Paris et al.   Scientific Reports

Transposable elements in Drosophila

(2020) Vincent Mérel et al.   Mobile DNA

Stress response, behavior, and development are shaped by transposable element-induced mutations in Drosophila

(2019) Gabriel E. Rech et al.   PLoS Genetics

Transposable elements drive rapid phenotypic variation in Capsella rubella

(2019) Xiao-Min Niu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Biological invasion: The influence of the hidden side of the (epi)genome

(2019) Pierre Marin et al.   FUNCTIONAL ECOLOGY

A benchmark of transposon insertion detection tools using real data

(2019) Pol Vendrell-Mir et al.   Mobile DNA

Evidence for positive selection on recent human transposable element insertions

(2018) Lavanya Rishishwar et al.   GENE

Molecular dissection of a natural transposable element invasion

(2018) Robert Kofler et al.   GENOME RESEARCH

The Genomic Basis of Color Pattern Polymorphism in the Harlequin Ladybird

(2018) Mathieu Gautier et al.   CURRENT BIOLOGY

Transposable Elements Contribute to the Adaptation of Arabidopsis thaliana

(2018) Zi-Wen Li et al.   Genome Biology and Evolution

Population-specific dynamics and selection patterns of transposable element insertions in European natural populations

(2018) Emmanuelle Lerat et al.   MOLECULAR ECOLOGY

PIWI-interacting RNAs: small RNAs with big functions

(2018) Deniz M. Ozata et al.   NATURE REVIEWS GENETICS

QTL mapping of natural variation reveals that the developmental regulator bruno reduces tolerance to P-element transposition in the Drosophila female germline

(2018) Erin S. Kelleher et al.   PLOS BIOLOGY

Rapid Increase in Genome Size as a Consequence of Transposable Element Hyperactivity in Wood-White (Leptidea) Butterflies

(2017) Venkat Talla et al.   Genome Biology and Evolution

Genome-Wide Estimates of Transposable Element Insertion and Deletion Rates in Drosophila Melanogaster

(2017) Jeffrey R. Adrion et al.   Genome Biology and Evolution

WorldClim 2: new 1-km spatial resolution climate surfaces for global land areas

(2017) Stephen E. Fick et al.   INTERNATIONAL JOURNAL OF CLIMATOLOGY

Revisiting the Relationship between Transposable Elements and the Eukaryotic Stress Response

(2017) Vivien Horváth et al.   TRENDS IN GENETICS

Pervasive epigenetic effects of Drosophila euchromatic transposable elements impact their evolution

(2017) Yuh Chwen G Lee et al.   eLife

Is There a Genetic Paradox of Biological Invasion?

(2016) Arnaud Estoup et al.   Annual Review of Ecology Evolution and Systematics

Strong phylogenetic inertia on genome size and transposable element content among 26 species of flies

(2016) Camille Sessegolo et al.   Biology Letters

Exploration of the Drosophila buzzatii transposable element content suggests underestimation of repeats in Drosophila genomes

(2016) Nuria Rius et al.   BMC GENOMICS

PoPoolationTE2: Comparative Population Genomics of Transposable Elements Using Pool-Seq

(2016) Robert Kofler et al.   MOLECULAR BIOLOGY AND EVOLUTION

A haplotype method detects diverse scenarios of local adaptation from genomic sequence variation

(2016) Jeremy D. Lange et al.   MOLECULAR ECOLOGY

The industrial melanism mutation in British peppered moths is a transposable element

(2016) Arjen E. van’t Hof et al.   NATURE

Genome-Wide Scan for Adaptive Divergence and Association with Population-Specific Covariates

(2015) M. Gautier   GENETICS

Transposable elements as agents of rapid adaptation may explain the genetic paradox of invasive species

(2015) Jessica Stapley et al.   MOLECULAR ECOLOGY

A genetic perspective on rapid evolution in cane toads (Rhinella marina)

(2015) Lee A. Rollins et al.   MOLECULAR ECOLOGY

The Dfam database of repetitive DNA families

(2015) Robert Hubley et al.   NUCLEIC ACIDS RESEARCH

The recent invasion of naturalDrosophila simulanspopulations by the P-element

(2015) Robert Kofler et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Tempo and Mode of Transposable Element Activity in Drosophila

(2015) Robert Kofler et al.   PLoS Genetics

“One code to find them all”: a perl tool to conveniently parse RepeatMasker output files

(2014) Marc Bailly-Bechet et al.   Mobile DNA

An Age-of-Allele Test of Neutrality for Transposable Element Insertions

(2013) J. P. Blumenstiel et al.   GENETICS

Mantel test in population genetics

(2013) José Alexandre F. Diniz-Filho et al.   GENETICS AND MOLECULAR BIOLOGY

Linking Genomics and Ecology to Investigate the Complex Evolution of an Invasive Drosophila Pest

(2013) Lino Ometto et al.   Genome Biology and Evolution

Abundance and Distribution of Transposable Elements in Two Drosophila QTL Mapping Resources

(2013) Julie M. Cridland et al.   MOLECULAR BIOLOGY AND EVOLUTION

Distribution, evolution, and diversity of retrotransposons at the flamenco locus reflect the regulatory properties of piRNA clusters

(2013) V. Zanni et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome of Drosophila suzukii , the Spotted Wing Drosophila

(2013) Joanna C. Chiu et al.   G3-Genes Genomes Genetics

Sequencing of Pooled DNA Samples (Pool-Seq) Uncovers Complex Dynamics of Transposable Element Insertions in Drosophila melanogaster

(2012) Robert Kofler et al.   PLoS Genetics

Osvaldo and Isis retrotransposons as markers of the Drosophila buzzatii colonisation in Australia

(2011) María Pilar García Guerreiro et al.   BMC EVOLUTIONARY BIOLOGY

Phylogeographic consequences of different introduction histories of invasive Australian Acacia species and Paraserianthes lophantha (Fabaceae) in South Africa

(2011) Johannes J. Le Roux et al.   DIVERSITY AND DISTRIBUTIONS

Long-term evolution of the roo transposable element copy number in mutation accumulation lines of Drosophila melanogaster

(2011) JULIA DÍAZ-GONZÁLEZ et al.   Genetics Research

What makes transposable elements move in the Drosophila genome?

(2011) M P García Guerreiro   HEREDITY

Considering Transposable Element Diversification in De Novo Annotation Approaches

(2011) Timothée Flutre et al.   PLoS One

PoPoolation: A Toolbox for Population Genetic Analysis of Next Generation Sequencing Data from Pooled Individuals

(2011) Robert Kofler et al.   PLoS One

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Genetic uniformity characterizes the invasive spread of water hyacinth (Eichhornia crassipes), a clonal aquatic plant

(2010) YUAN-YE ZHANG et al.   MOLECULAR ECOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Understanding invasion history: genetic structure and diversity of two globally invasive plants and implications for their management

(2009) P. J. Prentis et al.   DIVERSITY AND DISTRIBUTIONS

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

A Recent Adaptive Transposable Element Insertion Near Highly Conserved Developmental Loci in Drosophila melanogaster

(2009) J. Gonzalez et al.   MOLECULAR BIOLOGY AND EVOLUTION

The B73 Maize Genome: Complexity, Diversity, and Dynamics

(2009) P. S. Schnable et al.   SCIENCE

Using native and syntenically mapped cDNA alignments to improve de novo gene finding

(2008) Mario Stanke et al.   BIOINFORMATICS

Distribution of the transposable elements bilbo and gypsy in original and colonizing populations of Drosophila subobscura

(2008) María Pilar García Guerreiro et al.   BMC EVOLUTIONARY BIOLOGY

High Rate of Recent Transposable Element–Induced Adaptation in Drosophila melanogaster

(2008) Josefa González et al.   PLOS BIOLOGY