Temperature-responsive miRNAs in Drosophila orchestrate adaptation to different ambient temperatures

Gene‐specific correlation of RNA and protein levels in human cells and tissues

(2016) Fredrik Edfors et al.   Molecular Systems Biology

One Loop to Rule Them All: The Ping-Pong Cycle and piRNA-Guided Silencing

(2016) Benjamin Czech et al.   TRENDS IN BIOCHEMICAL SCIENCES

miARma-Seq: a comprehensive tool for miRNA, mRNA and circRNA analysis

(2016) Eduardo Andrés-León et al.   Scientific Reports

TEtranscripts: a package for including transposable elements in differential expression analysis of RNA-seq datasets

(2015) Ying Jin et al.   BIOINFORMATICS

Temperature during early development has long-term effects on microRNA expression in Atlantic cod

(2015) Teshome Tilahun Bizuayehu et al.   BMC GENOMICS

Temperature-Related Reaction Norms of Gene Expression: Regulatory Architecture and Functional Implications

(2015) Jun Chen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Slicing and Binding by Ago3 or Aub Trigger Piwi-Bound piRNA Production by Distinct Mechanisms

(2015) Wei Wang et al.   MOLECULAR CELL

piRNA cluster database: a web resource for piRNA producing loci

(2015) David Rosenkranz   NUCLEIC ACIDS RESEARCH

Genome-wide profiling of nucleosome sensitivity and chromatin accessibility inDrosophila melanogaster

(2015) Răzvan V. Chereji et al.   NUCLEIC ACIDS RESEARCH

Ensembl 2016

(2015) Andrew Yates et al.   NUCLEIC ACIDS RESEARCH

Tupaia small RNAs provide insights into function and evolution of RNAi-based transposon defense in mammals

(2015) David Rosenkranz et al.   RNA

Shifts in temperature within the physiologic range modify strand-specific expression of select human microRNAs

(2015) Ratnakar Potla et al.   RNA

Piwi Proteins and piRNAs in Mammalian Oocytes and Early Embryos

(2015) Elke F. Roovers et al.   Cell Reports

Impact of age-associated increase in 2'-O-methylation of miRNAs on aging and neurodegeneration in Drosophila

(2014) M. Abe et al.   GENES & DEVELOPMENT

Gene Ontology Consortium: going forward

(2014)   NUCLEIC ACIDS RESEARCH

Molecular Mechanisms of RNA Interference

(2013) Ross C. Wilson et al.   Annual Review of Biophysics

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

(2013) Y. Liao et al.   BIOINFORMATICS

miRBase: annotating high confidence microRNAs using deep sequencing data

(2013) Ana Kozomara et al.   NUCLEIC ACIDS RESEARCH

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Structure and function of Zucchini endoribonuclease in piRNA biogenesis

(2012) Hiroshi Nishimasu et al.   NATURE

The structural biochemistry of Zucchini implicates it as a nuclease in piRNA biogenesis

(2012) Jonathan J. Ipsaro et al.   NATURE

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

shutdown is a component of the Drosophila piRNA biogenesis machinery

(2012) J. B. Preall et al.   RNA

A detailed investigation of accessibilities around target sites of siRNAs and miRNAs

(2011) Hisanori Kiryu et al.   BIOINFORMATICS

What makes transposable elements move in the Drosophila genome?

(2011) M P García Guerreiro   HEREDITY

Heterotypic piRNA Ping-Pong Requires Qin, a Protein with Both E3 Ligase and Tudor Domains

(2011) Zhao Zhang et al.   MOLECULAR CELL

Drosophila vitelline membrane assembly: A critical role for an evolutionarily conserved cysteine in the “VM domain” of sV23

(2010) T. Wu et al.   DEVELOPMENTAL BIOLOGY

Roles for the Yb body components Armitage and Yb in primary piRNA biogenesis in Drosophila

(2010) K. Saito et al.   GENES & DEVELOPMENT

Genetic framework for flowering-time regulation by ambient temperature-responsive miRNAs in Arabidopsis

(2010) Hanna Lee et al.   NUCLEIC ACIDS RESEARCH

Small RNA-based silencing strategies for transposons in the process of invading Drosophila species

(2010) N. V. Rozhkov et al.   RNA

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Insect Fat Body: Energy, Metabolism, and Regulation

(2009) Estela L. Arrese et al.   Annual Review of Entomology

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Effects of temperature on gene expression in embryos of the coral Montastraea faveolata

(2009) Christian R Voolstra et al.   BMC GENOMICS

H2A.Z-Containing Nucleosomes Mediate the Thermosensory Response in Arabidopsis

(2009) S. Vinod Kumar et al.   CELL

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

GtRNAdb: a database of transfer RNA genes detected in genomic sequence

(2008) P. P. Chan et al.   NUCLEIC ACIDS RESEARCH

Microarray-based analysis of stress-regulated microRNAs in Arabidopsis thaliana

(2008) H.-H. Liu et al.   RNA