Soil and bark biodiversity forms discrete islands between vineyards that are not affected by distance or management regime

A DNA-barcode biodiversity standard analysis method (DNA-BSAM) reveals a large variance in the effect of a range of biological, chemical and physical soil management interventions at different sites, but location is one of the most important aspects determining the nature of agricultural soil microbiology

(2023) Matías Fernández-Huarte et al.   SOIL BIOLOGY & BIOCHEMISTRY

Rootstock–scion combination contributes to shape diversity and composition of microbial communities associated with grapevine root system

(2022) Ramona Marasco et al.   ENVIRONMENTAL MICROBIOLOGY

Wine Terroir and the Soil Bacteria: An Amplicon Sequencing–Based Assessment of the Barossa Valley and Its Sub-Regions

(2021) Jia Zhou et al.   Frontiers in Microbiology

A small effect of conservation agriculture on soil biodiversity that differs between biological kingdoms and geographic locations

(2021) Paulina Giraldo-Perez et al.   iScience

Sources and Assembly of Microbial Communities in Vineyards as a Functional Component of Winegrowing

(2021) Reid G. Griggs et al.   Frontiers in Microbiology

Network Properties of Local Fungal Communities Reveal the Anthropogenic Disturbance Consequences of Farming Practices in Vineyard Soils

(2021) Rüdiger Ortiz-Álvarez et al.   mSystems

The Utility of Macroecological Rules for Microbial Biogeography

(2021) Jonathan R. Dickey et al.   Frontiers in Ecology and Evolution

RESCRIPt: Reproducible sequence taxonomy reference database management

(2021) Michael S. Robeson et al.   PLoS Computational Biology

The global-scale distributions of soil protists and their contributions to belowground systems

(2020) Angela M. Oliverio et al.   Science Advances

Island biogeography of soil bacteria and fungi: similar patterns, but different mechanisms

(2020) Shao-peng Li et al.   ISME Journal

Effect of nitrogen on fungal growth efficiency

(2020) D. P. Di Lonardo et al.   PLANT BIOSYSTEMS

Soil Bacterial Communities Exhibit Strong Biogeographic Patterns at Fine Taxonomic Resolution

(2020) Sean K. Bay et al.   mSystems

Influence of vintage, geographic location and cultivar on the structure of microbial communities associated with the grapevine rhizosphere in vineyards of San Juan Province, Argentina

(2020) Mónica Oyuela Aguilar et al.   PLoS One

Bark and Grape Microbiome of Vitis vinifera: Influence of Geographic Patterns and Agronomic Management on Bacterial Diversity

(2019) Nicola Vitulo et al.   Frontiers in Microbiology

Interpreting distance‐decay pattern of soil bacteria via quantifying the assembly processes at multiple spatial scales

(2019) Maomao Feng et al.   MicrobiologyOpen

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

Soil and the intensification of agriculture for global food security

(2019) Peter M. Kopittke et al.   ENVIRONMENT INTERNATIONAL

Small scale fungal community differentiation in a vineyard system

(2019) Sarah J. Knight et al.   FOOD MICROBIOLOGY

Why do microbes exhibit weak biogeographic patterns?

(2018) Kyle M. Meyer et al.   ISME Journal

Effects of different management regimes on microbial biodiversity in vineyard soils

(2018) Maximilian Hendgen et al.   Scientific Reports

Biogeography of soil bacteria and archaea across France

(2018) Battle Karimi et al.   Science Advances

Broadscale Ecological Patterns Are Robust to Use of Exact Sequence Variants versus Operational Taxonomic Units

(2018) Sydney I. Glassman et al.   mSphere

From vineyard to winery: a source map of microbial diversity driving wine fermentation

(2017) Peter Morrison-Whittle et al.   ENVIRONMENTAL MICROBIOLOGY

Stochastic Community Assembly: Does It Matter in Microbial Ecology?

(2017) Jizhong Zhou et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Distribution patterns of soil microbial eukaryotes suggests widespread algivory by phagotrophic protists as an alternative pathway for nutrient cycling

(2017) Christophe V.W. Seppey et al.   SOIL BIOLOGY & BIOCHEMISTRY

Is microbial terroir related to geographic distance between vineyards?

(2017) Toshiko Miura et al.   Environmental Microbiology Reports

Uncovering the Horseshoe Effect in Microbial Analyses

(2017) James T. Morton et al.   mSystems

Spatial scale drives patterns in soil bacterial diversity

(2016) Sarah L. O'Brien et al.   ENVIRONMENTAL MICROBIOLOGY

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Vineyard soil bacterial diversity and composition revealed by 16S rRNA genes: Differentiation by vineyard management

(2016) Kayla N. Burns et al.   SOIL BIOLOGY & BIOCHEMISTRY

A Latitudinal Diversity Gradient in Terrestrial Bacteria of the Genus Streptomyces

(2016) Cheryl P. Andam et al.   mBio

Microbes as Engines of Ecosystem Function: When Does Community Structure Enhance Predictions of Ecosystem Processes?

(2016) Emily B. Graham et al.   Frontiers in Microbiology

Stochastic distribution of small soil eukaryotes resulting from high dispersal and drift in a local environment

(2015) Mohammad Bahram et al.   ISME Journal

Quantifying the relative roles of selective and neutral processes in defining eukaryotic microbial communities

(2015) Peter Morrison-Whittle et al.   ISME Journal

Composition and Spatial Distribution of Soil Mesofauna Along an Elevation Gradient on the North Slope of the Changbai Mountains, China

(2015) Yunfeng JIANG et al.   PEDOSPHERE

Microbiomes in light of traits: A phylogenetic perspective

(2015) J. B. H. Martiny et al.   SCIENCE

The Soil Microbiome Influences Grapevine-Associated Microbiota

(2015) Iratxe Zarraonaindia et al.   mBio

Biodiversity and Ecosystem Functioning

(2014) David Tilman et al.   Annual Review of Ecology Evolution and Systematics

Microbial biogeography: the end of the ubiquitous dispersal hypothesis?

(2014) Christopher J. van der Gast   ENVIRONMENTAL MICROBIOLOGY

Pyrosequencing reveals regional differences in fruit-associated fungal communities

(2014) Michael W. Taylor et al.   ENVIRONMENTAL MICROBIOLOGY

Spore dispersal of basidiomycete fungi at the landscape scale is driven by stochastic and deterministic processes and generates variability in plant-fungal interactions

(2014) Kabir G. Peay et al.   NEW PHYTOLOGIST

Redesign of PCR primers for mitochondrial cytochromecoxidase subunit I for marine invertebrates and application in all-taxa biotic surveys

(2013) J. Geller et al.   Molecular Ecology Resources

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Characterization of Epiphytic Bacterial Communities from Grapes, Leaves, Bark and Soil of Grapevine Plants Grown, and Their Relations

(2013) Guilherme Martins et al.   PLoS One

PNAS Plus: From the Cover: Microbial biogeography of wine grapes is conditioned by cultivar, vintage, and climate

(2013) N. A. Bokulich et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Global biogeography of highly diverse protistan communities in soil

(2012) Scott T Bates et al.   ISME Journal

Beyond biogeographic patterns: processes shaping the microbial landscape

(2012) China A. Hanson et al.   NATURE REVIEWS MICROBIOLOGY

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

The Vineyard Yeast Microbiome, a Mixed Model Microbial Map

(2012) Mathabatha Evodia Setati et al.   PLoS One

Transitions in bacterial communities along the 2000 km salinity gradient of the Baltic Sea

(2011) Daniel PR Herlemann et al.   ISME Journal

Flowers as Islands: Spatial Distribution of Nectar-Inhabiting Microfungi among Plants of Mimulus aurantiacus, a Hummingbird-Pollinated Shrub

(2011) Melinda Belisle et al.   MICROBIAL ECOLOGY

Drivers of bacterial  -diversity depend on spatial scale

(2011) J. B. H. Martiny et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Using null models to disentangle variation in community dissimilarity from variation in α-diversity

(2011) Jonathan M. Chase et al.   Ecosphere

Assembly history dictates ecosystem functioning: evidence from wood decomposer communities

(2010) Tadashi Fukami et al.   ECOLOGY LETTERS

Experimental tests of the bacterial distance–decay relationship

(2010) Thomas Bell   ISME Journal

Conceptual Synthesis in Community Ecology

(2010) Mark Vellend   QUARTERLY REVIEW OF BIOLOGY

Contrasting Soil pH Effects on Fungal and Bacterial Growth Suggest Functional Redundancy in Carbon Mineralization

(2009) J. Rousk et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A general framework for the distance-decay of similarity in ecological communities

(2008) Hélène Morlon et al.   ECOLOGY LETTERS

Microbial Biogeography: From Taxonomy to Traits

(2008) J. L. Green et al.   SCIENCE