Wine Terroir and the Soil Bacteria: An Amplicon Sequencing–Based Assessment of the Barossa Valley and Its Sub-Regions

The Fungal Microbiome Is an Important Component of Vineyard Ecosystems and Correlates with Regional Distinctiveness of Wine

(2020) Di Liu et al.   mSphere

Vineyard Soil Microbiome Composition Related to Rotundone Concentration in Australian Cool Climate ‘Peppery’ Shiraz Grapes

(2019) Vadakattu V. S. R. Gupta et al.   Frontiers in Microbiology

Soil-plant compartments affect fungal microbiome diversity and composition in grapevine

(2019) María del Pilar Martínez-Diz et al.   Fungal Ecology

From the Vineyard to the Winery: How Microbial Ecology Drives Regional Distinctiveness of Wine

(2019) Di Liu et al.   Frontiers in Microbiology

Large-scale replicated field study of maize rhizosphere identifies heritable microbes

(2018) William A. Walters et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Geographical and Cultivar Features Differentiate Grape Microbiota in Northern Italy and Spain Vineyards

(2018) Valerio Mezzasalma et al.   Frontiers in Microbiology

Cropping practices manipulate abundance patterns of root and soil microbiome members paving the way to smart farming

(2018) Kyle Hartman et al.   Microbiome

Bacterial community dynamics in the rhizosphere of a long-lived, leguminous shrub across a 40-year age sequence

(2017) Xiaofan Na et al.   JOURNAL OF SOILS AND SEDIMENTS

Is microbial terroir related to geographic distance between vineyards?

(2017) Toshiko Miura et al.   Environmental Microbiology Reports

A Concise Review on Multi-Omics Data Integration for Terroir Analysis in Vitis vinifera

(2017) Pastor Jullian Fabres et al.   Frontiers in Plant Science

Normalization and microbial differential abundance strategies depend upon data characteristics

(2017) Sophie Weiss et al.   Microbiome

BBMerge – Accurate paired shotgun read merging via overlap

(2017) Brian Bushnell et al.   PLoS One

pH is the primary determinant of the bacterial community structure in agricultural soils impacted by polycyclic aromatic hydrocarbon pollution

(2017) Yucheng Wu et al.   Scientific Reports

Bacteria as emerging indicators of soil condition

(2016) Syrie M. Hermans et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Life at the interface: above- and below-ground responses of a grazed pasture soil to reforestation

(2016) T.R. Cavagnaro   APPLIED SOIL ECOLOGY

The impact of tropical forest logging and oil palm agriculture on the soil microbiome

(2016) Binu M. Tripathi et al.   MOLECULAR ECOLOGY

Associations among Wine Grape Microbiome, Metabolome, and Fermentation Behavior Suggest Microbial Contribution to Regional Wine Characteristics

(2016) Nicholas A. Bokulich et al.   mBio

Host genotype and age shape the leaf and root microbiomes of a wild perennial plant

(2016) Maggie R. Wagner et al.   Nature Communications

Consistent responses of the microbial community structure to organic farming along the middle and lower reaches of the Yangtze River

(2016) Wenhui Wang et al.   Scientific Reports

Differential Assemblage of Functional Units in Paddy Soil Microbiomes

(2015) Yongkyu Kim et al.   PLoS One

Vineyard soil bacterial diversity and composition revealed by 16S rRNA genes: Differentiation by geographic features

(2015) Kayla N. Burns et al.   SOIL BIOLOGY & BIOCHEMISTRY

The Soil Microbiome Influences Grapevine-Associated Microbiota

(2015) Iratxe Zarraonaindia et al.   mBio

Analyses of soil microbial community compositions and functional genes reveal potential consequences of natural forest succession

(2015) Jing Cong et al.   Scientific Reports

Bacterial communities in the rhizosphere of Vitis vinifera L. cultivated under distinct agricultural practices in Argentina

(2014) A. D. Vega-Avila et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Plant age and genotype affect the bacterial community composition in the tuber rhizosphere of field-grown sweet potato plants

(2014) Joana M. Marques et al.   FEMS MICROBIOLOGY ECOLOGY

Dynamics of Soil Bacterial Communities in Response to Repeated Application of Manure Containing Sulfadiazine

(2014) Guo-Chun Ding et al.   PLoS One

High throughput sequencing analysis of biogeographical distribution of bacterial communities in the black soils of northeast China

(2014) Junjie Liu et al.   SOIL BIOLOGY & BIOCHEMISTRY

Going back to the roots: the microbial ecology of the rhizosphere

(2013) Laurent Philippot et al.   NATURE REVIEWS MICROBIOLOGY

Potential impact of soil microbiomes on the leaf metabolome and on herbivore feeding behavior

(2013) Dayakar V. Badri et al.   NEW PHYTOLOGIST

Different Selective Effects on Rhizosphere Bacteria Exerted by Genetically Modified versus Conventional Potato Lines

(2013) Armando Cavalcante Franco Dias et al.   PLoS One

Characterization of Epiphytic Bacterial Communities from Grapes, Leaves, Bark and Soil of Grapevine Plants Grown, and Their Relations

(2013) Guilherme Martins et al.   PLoS One

GenGIS 2: Geospatial Analysis of Traditional and Genetic Biodiversity, with New Gradient Algorithms and an Extensible Plugin Framework

(2013) Donovan H. Parks et al.   PLoS One

Plant growth promoting potentials ofPseudomonasspp. strain OG isolated from marine water

(2013) Dweipayan Goswami et al.   Journal of Plant Interactions

Turnover of soil bacterial diversity driven by wide-scale environmental heterogeneity

(2013) L. Ranjard et al.   Nature Communications

EMPeror: a tool for visualizing high-throughput microbial community data

(2013) Yoshiki Vázquez-Baeza et al.   GigaScience

GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research--an update

(2012) R. Peakall et al.   BIOINFORMATICS

Which sequencing depth is sufficient to describe patterns in bacterial α- and β-diversity?

(2012) Daniel Lundin et al.   Environmental Microbiology Reports

The microbial ecology of wine grape berries

(2011) A. Barata et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

(2011) Daniel McDonald et al.   ISME Journal

Endophytes of Grapevine Flowers, Berries, and Seeds: Identification of Cultivable Bacteria, Comparison with Other Plant Parts, and Visualization of Niches of Colonization

(2011) Stéphane Compant et al.   MICROBIAL ECOLOGY

Influence of Soil Characteristics on the Diversity of Bacteria in the Southern Brazilian Atlantic Forest

(2010) H. Faoro et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Different farming and water regimes in Italian rice fields affect arbuscular mycorrhizal fungal soil communities

(2010) Erica Lumini et al.   ECOLOGICAL APPLICATIONS

Climate change associated effects on grape and wine quality and production

(2010) Ramón Mira de Orduña   FOOD RESEARCH INTERNATIONAL

Effects of soil type and farm management on soil ecological functional genes and microbial activities

(2010) Jennifer R Reeve et al.   ISME Journal

Soil bacterial and fungal communities across a pH gradient in an arable soil

(2010) Johannes Rousk et al.   ISME Journal

Examining the global distribution of dominant archaeal populations in soil

(2010) Scott T Bates et al.   ISME Journal

Life history determines biogeographical patterns of soil bacterial communities over multiple spatial scales

(2010) A. BISSETT et al.   MOLECULAR ECOLOGY

Organic agriculture promotes evenness and natural pest control

(2010) David W. Crowder et al.   NATURE

Effects of plant species richness and evenness on soil microbial community diversity and function

(2010) Eric G. Lamb et al.   PLANT AND SOIL

Pyrosequencing Assessment of Soil Microbial Communities in Organic and Conventional Potato Farms

(2010) Akifumi Sugiyama et al.   PLANT DISEASE

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Soil Microbial Community Responses to Multiple Experimental Climate Change Drivers

(2009) H. F. Castro et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Pyrosequencing-Based Assessment of Soil pH as a Predictor of Soil Bacterial Community Structure at the Continental Scale

(2009) C. L. Lauber et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

GenGIS: A geospatial information system for genomic data

(2009) D. H. Parks et al.   GENOME RESEARCH

Changes in land use alter the structure of bacterial communities in Western Amazon soils

(2009) Ederson da C Jesus et al.   ISME Journal

Initial community evenness favours functionality under selective stress

(2009) Lieven Wittebolle et al.   NATURE

Diversity of Thermophilic Anaerobes

(2008) Isaac D. Wagner et al.   Annals of the New York Academy of Sciences