Rootstock–scion combination contributes to shape diversity and composition of microbial communities associated with grapevine root system

Back to our roots: exploring the role of root morphology as a mediator of beneficial plant–microbe interactions

(2022) Courtney Horn Herms et al.   ENVIRONMENTAL MICROBIOLOGY

Deciphering the role of specialist and generalist plant–microbial interactions as drivers of plant–soil feedback

(2022) Marina Semchenko et al.   NEW PHYTOLOGIST

Rare Species-Driven Diversity–Ecosystem Multifunctionality Relationships are Promoted by Stochastic Community Assembly

(2022) Zhengqing Zhang et al.   mBio

A global microbiome survey of vineyard soils highlights the microbial dimension of viticultural terroirs

(2022) Alex Gobbi et al.   Communications Biology

Grapevine Microbiota Reflect Diversity among Compartments and Complex Interactions within and among Root and Shoot Systems

(2021) Joel F. Swift et al.   Microorganisms

Enabling sustainable agriculture through understanding and enhancement of microbiomes

(2021) Pankaj Trivedi et al.   NEW PHYTOLOGIST

Interactive Effects of Scion and Rootstock Genotypes on the Root Microbiome of Grapevines (Vitis spp. L.)

(2021) Stefanie Nicoline Vink et al.   Applied Sciences-Basel

Sources and Assembly of Microbial Communities in Vineyards as a Functional Component of Winegrowing

(2021) Reid G. Griggs et al.   Frontiers in Microbiology

Protist diversity and community complexity in the rhizosphere of switchgrass are dynamic as plants develop

(2021) Javier A. Ceja-Navarro et al.   Microbiome

Rootstocks Shape Their Microbiome—Bacterial Communities in the Rhizosphere of Different Grapevine Rootstocks

(2021) Leonie Dries et al.   Microorganisms

Engineering Host Microbiome for Crop Improvement and Sustainable Agriculture

(2021) Sanjana Kaul et al.   Frontiers in Microbiology

Rhizosphere engineering: leading towards a sustainable viticulture?

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Apple scion cultivars regulate the rhizosphere microbiota of scion/rootstock combinations

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Mycorrhizal symbiosis balances rootstock-mediated growth-defence tradeoffs

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The microbiota of the grapevine holobiont: A key component of plant health

(2021) Pauline Bettenfeld et al.   Journal of Advanced Research

Crosstalk amongst phytohormones from planta and PGPR under biotic and abiotic stresses

(2020) Naeem Khan et al.   PLANT GROWTH REGULATION

Diversity buffers winegrowing regions from climate change losses

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Discovering the bacteriome of Vitis vinifera cv. Pinot Noir in a conventionally managed vineyard

(2020) Elisa Gamalero et al.   Scientific Reports

Plant Grafting Shapes Complexity and Co-occurrence of Rhizobacterial Assemblages

(2020) Yang Ruan et al.   MICROBIAL ECOLOGY

Crop microbiome and sustainable agriculture

(2020) Brajesh K. Singh et al.   NATURE REVIEWS MICROBIOLOGY

Bacterial community dynamics varies with soil management and irrigation practices in grapevines (Vitis vinifera L.)

(2020) Stefanie N. Vink et al.   APPLIED SOIL ECOLOGY

Cross-Biome Drivers of Soil Bacterial Alpha Diversity on a Worldwide Scale

(2019) Manuel Delgado-Baquerizo et al.   ECOSYSTEMS

Genetic diversity and parentage analysis of grape rootstocks

(2019) Summaira Riaz et al.   THEORETICAL AND APPLIED GENETICS

The Fungal and Bacterial Rhizosphere Microbiome Associated With Grapevine Rootstock Genotypes in Mature and Young Vineyards

(2019) Carmen Berlanas et al.   Frontiers in Microbiology

More Than the Sum of Its Parts: Microbiome Biodiversity as a Driver of Plant Growth and Soil Health

(2019) Muhammad Saleem et al.   Annual Review of Ecology Evolution and Systematics

Root exudates: from plant to rhizosphere and beyond

(2019) Vicente Vives-Peris et al.   PLANT CELL REPORTS

Climate change effects on plant-soil feedbacks and consequences for biodiversity and functioning of terrestrial ecosystems

(2019) Francisco I. Pugnaire et al.   Science Advances

The stage of soil development modulates rhizosphere effect along a High Arctic desert chronosequence

(2018) Francesca Mapelli et al.   ISME Journal

Lost in diversity: the interactions between soil-borne fungi, biodiversity and plant productivity

(2018) Liesje Mommer et al.   NEW PHYTOLOGIST

Transcriptome dynamics atArabidopsisgraft junctions reveal an intertissue recognition mechanism that activates vascular regeneration

(2018) Charles W. Melnyk et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Embracing Community Ecology in Plant Microbiome Research

(2018) Francisco Dini-Andreote et al.   TRENDS IN PLANT SCIENCE

Feed Your Friends: Do Plant Exudates Shape the Root Microbiome?

(2018) Joelle Sasse et al.   TRENDS IN PLANT SCIENCE

Root exudate metabolites drive plant-soil feedbacks on growth and defense by shaping the rhizosphere microbiota

(2018) Lingfei Hu et al.   Nature Communications

Microbial interactions within the plant holobiont

(2018) M. Amine Hassani et al.   Microbiome

Grapevine rootstocks shape underground bacterial microbiome and networking but not potential functionality

(2018) Ramona Marasco et al.   Microbiome

Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly

(2018) Kateryna Zhalnina et al.   Nature Microbiology

Chloroplast sequence variation and the efficacy of peptide nucleic acids for blocking host amplification in plant microbiome studies

(2018) Connor R. Fitzpatrick et al.   Microbiome

Plant health: feedback effect of root exudates-rhizobiome interactions

(2018) Oluwaseyi Samuel Olanrewaju et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Merging genotypes: graft union formation and scion–rootstock interactions

(2018) Antoine T Gautier et al.   JOURNAL OF EXPERIMENTAL BOTANY

Rhizosheath microbial community assembly of sympatric desert speargrasses is independent of the plant host

(2018) Ramona Marasco et al.   Microbiome

Small molecules below-ground: the role of specialized metabolites in the rhizosphere

(2017) Hassan Massalha et al.   PLANT JOURNAL

Phytohormones and Beneficial Microbes: Essential Components for Plants to Balance Stress and Fitness

(2017) Dilfuza Egamberdieva et al.   Frontiers in Microbiology

Normalization and microbial differential abundance strategies depend upon data characteristics

(2017) Sophie Weiss et al.   Microbiome

Plant growth-promoting bacterial endophytes

(2016) Gustavo Santoyo et al.   MICROBIOLOGICAL RESEARCH

Root-associated bacteria promote grapevine growth: from the laboratory to the field

(2016) Eleonora Rolli et al.   PLANT AND SOIL

Vineyard soil bacterial diversity and composition revealed by 16S rRNA genes: Differentiation by vineyard management

(2016) Kayla N. Burns et al.   SOIL BIOLOGY & BIOCHEMISTRY

Rootstocks: Diversity, Domestication, and Impacts on Shoot Phenotypes

(2016) Emily J. Warschefsky et al.   TRENDS IN PLANT SCIENCE

Metabolomics in the Rhizosphere: Tapping into Belowground Chemical Communication

(2016) Nicole M. van Dam et al.   TRENDS IN PLANT SCIENCE

Associations among Wine Grape Microbiome, Metabolome, and Fermentation Behavior Suggest Microbial Contribution to Regional Wine Characteristics

(2016) Nicholas A. Bokulich et al.   mBio

Microbes Drive Evolution of Animals and Plants: the Hologenome Concept

(2016) Eugene Rosenberg et al.   mBio

Roots Withstanding their Environment: Exploiting Root System Architecture Responses to Abiotic Stress to Improve Crop Tolerance

(2016) Iko T. Koevoets et al.   Frontiers in Plant Science

Roostocks/Scion/Nitrogen Interactions Affect Secondary Metabolism in the Grape Berry

(2016) Aude Habran et al.   Frontiers in Plant Science

The importance of the microbiome of the plant holobiont

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Root surface as a frontier for plant microbiome research: Fig. 1.

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Salicylic acid modulates colonization of the root microbiome by specific bacterial taxa

(2015) S. L. Lebeis et al.   SCIENCE

Engineering Microbiomes to Improve Plant and Animal Health

(2015) U.G. Mueller et al.   TRENDS IN MICROBIOLOGY

The Soil Microbiome Influences Grapevine-Associated Microbiota

(2015) Iratxe Zarraonaindia et al.   mBio

Associations with rhizosphere bacteria can confer an adaptive advantage to plants

(2015) Cara H. Haney et al.   Nature Plants

Water limitation and rootstock genotype interact to alter grape berry metabolism through transcriptome reprogramming

(2015) Mariam Berdeja et al.   Horticulture Research

Bacterial communities in the rhizosphere of Vitis vinifera L. cultivated under distinct agricultural practices in Argentina

(2014) A. D. Vega-Avila et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Shoot chloride exclusion and salt tolerance in grapevine is associated with differential ion transporter expression in roots

(2014) Sam W Henderson et al.   BMC PLANT BIOLOGY

Improved plant resistance to drought is promoted by the root-associated microbiome as a water stress-dependent trait

(2014) Eleonora Rolli et al.   ENVIRONMENTAL MICROBIOLOGY

An abundant ‘Candidatus Phytoplasma solani’ tuf b strain is associated with grapevine, stinging nettle and Hyalesthes obsoletus

(2014) A. Aryan et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

Horizontal genome transfer as an asexual path to the formation of new species

(2014) Ignacia Fuentes et al.   NATURE

Belowground biodiversity and ecosystem functioning

(2014) Richard D. Bardgett et al.   NATURE

Functional Soil Microbiome: Belowground Solutions to an Aboveground Problem

(2014) V. Lakshmanan et al.   PLANT PHYSIOLOGY

Bacterial Endophytic Communities in the Grapevine Depend on Pest Management

(2014) Andrea Campisano et al.   PLoS One

Structure and Functions of the Bacterial Microbiota of Plants

(2013) Davide Bulgarelli et al.   Annual Review of Plant Biology

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

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(2013) Paul J. McMurdie et al.   PLoS One

Plant Growth Promotion Potential Is Equally Represented in Diverse Grapevine Root-Associated Bacterial Communities from Different Biopedoclimatic Environments

(2013) Ramona Marasco et al.   Biomed Research International

Grapevine rootstock effects on scion sap phenolic levels, resistance to Xylella fastidiosa infection, and progression of Pierce's disease

(2013) Christopher M. Wallis et al.   Frontiers in Plant Science

Fungal Endophytic Communities in Grapevines (Vitis vinifera L.) Respond to Crop Management

(2012) Michael Pancher et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

Mapping genetic loci for tolerance to lime-induced iron deficiency chlorosis in grapevine rootstocks (Vitis sp.)

(2012) Pierre-François Bert et al.   THEORETICAL AND APPLIED GENETICS

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(2012) Roeland L. Berendsen et al.   TRENDS IN PLANT SCIENCE

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QIIME allows analysis of high-throughput community sequencing data

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Hormonal signaling in rootstock–scion interactions

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Auxin Control of Root Development

(2010) P. Overvoorde et al.   Cold Spring Harbor Perspectives in Biology

Scion genotype controls biomass allocation and root development in grafted grapevine

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