Spatial scale drives patterns in soil bacterial diversity

Microbial composition alters the response of litter decomposition to environmental change

(2015) Kristin L. Matulich et al.   ECOLOGY

The Earth Microbiome project: successes and aspirations

(2014) Jack A Gilbert et al.   BMC BIOLOGY

The spatial structure of bacterial communities is influenced by historical environmental conditions

(2014) Martin G. I. Andersson et al.   ECOLOGY

Why are some microbes more ubiquitous than others? Predicting the habitat breadth of soil bacteria

(2014) Albert Barberán et al.   ECOLOGY LETTERS

Impact of long-term N, P, K, and NPK fertilization on the composition and potential functions of the bacterial community in grassland soil

(2014) Yao Pan et al.   FEMS MICROBIOLOGY ECOLOGY

Microbial community composition explains soil respiration responses to changing carbon inputs along an Andes-to-Amazon elevation gradient

(2014) Jeanette Whitaker et al.   JOURNAL OF ECOLOGY

Local-scale biogeography and spatiotemporal variability in communities of mycorrhizal fungi

(2014) Mohammad Bahram et al.   NEW PHYTOLOGIST

High throughput sequencing analysis of biogeographical distribution of bacterial communities in the black soils of northeast China

(2014) Junjie Liu et al.   SOIL BIOLOGY & BIOCHEMISTRY

Soil properties and tree species drive ß-diversity of soil bacterial communities

(2014) William J. Landesman et al.   SOIL BIOLOGY & BIOCHEMISTRY

Recently identified microbial guild mediates soil N2O sink capacity

(2014) Christopher M. Jones et al.   Nature Climate Change

Response of microbial communities to long-term fertilization depends on their microhabitat

(2013) Dominik Neumann et al.   FEMS MICROBIOLOGY ECOLOGY

Loss in microbial diversity affects nitrogen cycling in soil

(2013) Laurent Philippot et al.   ISME Journal

Evidence for a persistent microbial seed bank throughout the global ocean

(2013) S. M. Gibbons et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Reconstructing the Microbial Diversity and Function of Pre-Agricultural Tallgrass Prairie Soils in the United States

(2013) N. Fierer et al.   SCIENCE

Micrometer-scale physical structure and microbial composition of soil macroaggregates

(2013) Vanessa L. Bailey et al.   SOIL BIOLOGY & BIOCHEMISTRY

Turnover of soil bacterial diversity driven by wide-scale environmental heterogeneity

(2013) L. Ranjard et al.   Nature Communications

Oligotyping: differentiating between closely related microbial taxa using 16S rRNA gene data

(2013) A. Murat Eren et al.   Methods in Ecology and Evolution

Global soil carbon projections are improved by modelling microbial processes

(2013) William R. Wieder et al.   Nature Climate Change

Spatial distribution of N-cycling microbial communities showed complex patterns in constructed wetland sediments

(2012) David Correa-Galeote et al.   FEMS MICROBIOLOGY ECOLOGY

Chronic N-amended soils exhibit an altered bacterial community structure in Harvard Forest, MA, USA

(2012) Swathi A. Turlapati et al.   FEMS MICROBIOLOGY ECOLOGY

Consistent effects of nitrogen amendments on soil microbial communities and processes across biomes

(2012) Kelly S. Ramirez et al.   GLOBAL CHANGE BIOLOGY

The Microbial Efficiency-Matrix Stabilization (MEMS) framework integrates plant litter decomposition with soil organic matter stabilization: do labile plant inputs form stable soil organic matter?

(2012) M. Francesca Cotrufo et al.   GLOBAL CHANGE BIOLOGY

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Cross-biome metagenomic analyses of soil microbial communities and their functional attributes

(2012) N. Fierer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Inferring Correlation Networks from Genomic Survey Data

(2012) Jonathan Friedman et al.   PLoS Computational Biology

A framework for representing microbial decomposition in coupled climate models

(2011) Katherine E. O. Todd-Brown et al.   BIOGEOCHEMISTRY

The bacterial biogeography of British soils

(2011) Robert I. Griffiths et al.   ENVIRONMENTAL MICROBIOLOGY

Influence of land-use intensity on the spatial distribution of N-cycling microorganisms in grassland soils

(2011) Daniel Keil et al.   FEMS MICROBIOLOGY ECOLOGY

Grassland community composition drives small-scale spatial patterns in soil properties and processes

(2011) Sophie S. Parker et al.   GEODERMA

Comparative metagenomic, phylogenetic and physiological analyses of soil microbial communities across nitrogen gradients

(2011) Noah Fierer et al.   ISME Journal

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

(2011) Daniel McDonald et al.   ISME Journal

Using network analysis to explore co-occurrence patterns in soil microbial communities

(2011) Albert Barberán et al.   ISME Journal

Microbial seed banks: the ecological and evolutionary implications of dormancy

(2011) Jay T. Lennon et al.   NATURE REVIEWS MICROBIOLOGY

The under-recognized dominance of Verrucomicrobia in soil bacterial communities

(2011) Gaddy T. Bergmann et al.   SOIL BIOLOGY & BIOCHEMISTRY

Pyrosequencing and mid-infrared spectroscopy reveal distinct aggregate stratification of soil bacterial communities and organic matter composition

(2011) Marko Davinic et al.   SOIL BIOLOGY & BIOCHEMISTRY

Low Pore Connectivity Increases Bacterial Diversity in Soil

(2010) J. K. Carson et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The effect of nutrient deposition on bacterial communities in Arctic tundra soil

(2010) Barbara J. Campbell et al.   ENVIRONMENTAL MICROBIOLOGY

Determinants of the distribution of nitrogen-cycling microbial communities at the landscape scale

(2010) D Bru et al.   ISME Journal

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Functional diversity of microbial decomposers facilitates plant coexistence in a plant-microbe-soil feedback model

(2010) T. Miki et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Soil texture affects soil microbial and structural recovery during grassland restoration

(2010) Elizabeth M. Bach et al.   SOIL BIOLOGY & BIOCHEMISTRY

Tree species-mediated spatial patchiness of the composition of microbial community and physicochemical properties in the topsoils of a tropical montane forest

(2010) Masayuki Ushio et al.   SOIL BIOLOGY & BIOCHEMISTRY

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Testing the functional significance of microbial community composition

(2009) Michael S. Strickland et al.   ECOLOGY

Mapping field-scale spatial patterns of size and activity of the denitrifier community

(2009) Laurent Philippot et al.   ENVIRONMENTAL MICROBIOLOGY

Soil sampling based on field spatial variability of soil microbial indicators

(2009) Joséphine Peigné et al.   EUROPEAN JOURNAL OF SOIL BIOLOGY

Minerals in soil select distinct bacterial communities in their microhabitats

(2009) Jennifer K. Carson et al.   FEMS MICROBIOLOGY ECOLOGY

The Biogeography of Ammonia-Oxidizing Bacterial Communities in Soil

(2009) Noah Fierer et al.   MICROBIAL ECOLOGY

Does grassland vegetation drive soil microbial diversity?

(2009) P. Millard et al.   NUTRIENT CYCLING IN AGROECOSYSTEMS

Microbial communities and their relevance for ecosystem models: Decomposition as a case study

(2009) Krista L. McGuire et al.   SOIL BIOLOGY & BIOCHEMISTRY

Spatial scaling of functional gene diversity across various microbial taxa

(2008) J. Zhou et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA