- Home
- Publications
- Publication Search
- Publication Details
Title
Regulation of chromatin organization during animal regeneration
Authors
Keywords
-
Journal
Cell Regeneration
Volume 12, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2023-06-01
DOI
10.1186/s13619-023-00162-x
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- In vivo CRISPR screening identifies BAZ2 chromatin remodelers as druggable regulators of mammalian liver regeneration
- (2022) Yuemeng Jia et al. Cell Stem Cell
- Genome organization controls transcriptional dynamics during development
- (2022) Philippe J. Batut et al. SCIENCE
- Polyploidy as a Fundamental Phenomenon in Evolution, Development, Adaptation and Diseases
- (2022) Olga V. Anatskaya et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Enhancer selection dictates gene expression responses in remote organs during tissue regeneration
- (2022) Fei Sun et al. NATURE CELL BIOLOGY
- CTCF functions as an insulator for somatic genes and a chromatin remodeler for pluripotency genes during reprogramming
- (2022) Yawei Song et al. Cell Reports
- Adrenergic receptor signaling induced by Klf15, a regulator of regeneration enhancer, promotes kidney reconstruction
- (2022) Nanoka Suzuki et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Dataset for transcriptomic, H3K9ac and H3K9me3 profiles during cardiac regeneration
- (2022) Xuelong Wang et al. Data in Brief
- Topologically associating domain boundaries that are stable across diverse cell types are evolutionarily constrained and enriched for heritability
- (2021) Evonne McArthur et al. AMERICAN JOURNAL OF HUMAN GENETICS
- Understanding transcription across scales: From base pairs to chromosomes
- (2021) Seychelle M. Vos MOLECULAR CELL
- Genome-wide enhancer maps link risk variants to disease genes
- (2021) Joseph Nasser et al. NATURE
- Altered chromatin conformation and transcriptional regulation in watermelon following genome doubling
- (2021) Marleny Garcia‐Lozano et al. PLANT JOURNAL
- Deletion of CTCF sites in the SHH locus alters enhancer–promoter interactions and leads to acheiropodia
- (2021) Aki Ushiki et al. Nature Communications
- An ATAC-seq Dataset Uncovers the Regulatory Landscape During Axolotl Limb Regeneration
- (2021) Xiaoyu Wei et al. Frontiers in Cell and Developmental Biology
- Evolution and Plasticity of Genome-Wide Meiotic Recombination Rates
- (2021) Ian R. Henderson et al. Annual Review of Genetics
- DNA methylation atlas and machinery in the developing and regenerating annelid Platynereis dumerilii
- (2021) Anabelle Planques et al. BMC BIOLOGY
- Polyploidy in Tissue Repair and Regeneration
- (2021) Erin C. Bailey et al. Cold Spring Harbor Perspectives in Biology
- Chromatin remodelling and retrotransposons activities during regeneration in Drosophila
- (2021) Natalia Azpiazu et al. DEVELOPMENTAL BIOLOGY
- Regeneration enhancers: A clue to reactivation of developmental genes
- (2020) Nanoka Suzuki et al. DEVELOPMENT GROWTH & DIFFERENTIATION
- Cell Fusion-Mediated Tissue Regeneration as an Inducer of Polyploidy and Aneuploidy
- (2020) Jessica Dörnen et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- On the existence and functionality of topologically associating domains
- (2020) Jonathan A. Beagan et al. NATURE GENETICS
- Mechanisms and Functions of Chromosome Compartmentalization
- (2020) Erica M. Hildebrand et al. TRENDS IN BIOCHEMICAL SCIENCES
- AP-1 Contributes to Chromatin Accessibility to Promote Sarcomere Disassembly and Cardiomyocyte Protrusion during Zebrafish Heart Regeneration
- (2020) Arica Beisaw et al. CIRCULATION RESEARCH
- Methods for ChIP-seq analysis: A practical workflow and advanced applications
- (2020) Ryuichiro Nakato et al. METHODS
- Enhancer–promoter interactions and transcription
- (2020) Douglas R. Higgs NATURE GENETICS
- Unraveling the Epigenetic Basis of Liver Development, Regeneration and Disease
- (2020) Filippo Macchi et al. TRENDS IN GENETICS
- Genome and single-cell RNA-sequencing of the earthworm Eisenia andrei identifies cellular mechanisms underlying regeneration
- (2020) Yong Shao et al. Nature Communications
- Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors
- (2020) Anneke Dixie Kakebeen et al. eLife
- Gene regulatory programmes of tissue regeneration
- (2020) Joseph A. Goldman et al. NATURE REVIEWS GENETICS
- Damage-responsive, maturity-silenced enhancers regulate multiple genes that direct regeneration in Drosophila
- (2020) Robin E Harris et al. eLife
- Gene regulatory networks controlling vertebrate retinal regeneration
- (2020) Thanh Hoang et al. SCIENCE
- Changes in regeneration-responsive enhancers shape regenerative capacities in vertebrates
- (2020) Wei Wang et al. SCIENCE
- CTCF-mediated chromatin looping in EGR2 regulation and SUZ12 recruitment critical for peripheral myelination and repair
- (2020) Jincheng Wang et al. Nature Communications
- Forever young: Linking regeneration and genome size in salamanders
- (2020) Stanley K. Sessions et al. DEVELOPMENTAL DYNAMICS
- Cell-Type-Specific Gene Regulatory Networks Underlying Murine Neonatal Heart Regeneration at Single-Cell Resolution
- (2020) Zhaoning Wang et al. Cell Reports
- Single-cell omics analysis reveals functional diversification of hepatocytes during liver regeneration
- (2020) Tianyi Chen et al. JCI Insight
- HDAC inhibitors promote intestinal epithelial regeneration via autocrine TGFβ1 signalling in inflammation
- (2019) Marie Friedrich et al. Mucosal Immunology
- Chromatin accessibility and the regulatory epigenome
- (2019) Sandy L. Klemm et al. NATURE REVIEWS GENETICS
- Arid3a regulates nephric tubule regeneration via evolutionarily conserved regeneration signal-response enhancers
- (2019) Nanoka Suzuki et al. eLife
- Coordinated Dialogue between UHRF1 and DNMT1 to Ensure Faithful Inheritance of Methylated DNA Patterns
- (2019) Christian Bronner et al. Genes
- Acoel genome reveals the regulatory landscape of whole-body regeneration
- (2019) Andrew R. Gehrke et al. SCIENCE
- The role of transcription in shaping the spatial organization of the genome
- (2019) Bas van Steensel et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Long-range enhancer–promoter contacts in gene expression control
- (2019) Stefan Schoenfelder et al. NATURE REVIEWS GENETICS
- Chromatin dynamics during liver regeneration
- (2019) Maria Arechederra et al. SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY
- The role of 3D genome organization in development and cell differentiation
- (2019) Hui Zheng et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Biological adaptations in the Arctic cervid, the reindeer (Rangifer tarandus)
- (2019) Zeshan Lin et al. SCIENCE
- The AP-1 transcriptional complex: Local switch or remote command?
- (2019) Fabienne Bejjani et al. BIOCHIMICA ET BIOPHYSICA ACTA-REVIEWS ON CANCER
- The AP-1 transcription factor JunB functions in Xenopus tail regeneration by positively regulating cell proliferation
- (2019) Makoto Nakamura et al. BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
- Broad Distribution of Hepatocyte Proliferation in Liver Homeostasis and Regeneration
- (2019) Feng Chen et al. Cell Stem Cell
- The African turquoise killifish: A research organism to study vertebrate aging and diapause
- (2018) Chi-Kuo Hu et al. AGING CELL
- A Role for Ploidy in Heart Regeneration
- (2018) Zachary A. Kadow et al. DEVELOPMENTAL CELL
- Myocardial Polyploidization Creates a Barrier to Heart Regeneration in Zebrafish
- (2018) Juan Manuel González-Rosa et al. DEVELOPMENTAL CELL
- 3C and 3C-based techniques: the powerful tools for spatial genome organization deciphering
- (2018) Jinlei Han et al. Molecular Cytogenetics
- The genome of Schmidtea mediterranea and the evolution of core cellular mechanisms
- (2018) Markus Alexander Grohme et al. NATURE
- The axolotl genome and the evolution of key tissue formation regulators
- (2018) Sergej Nowoshilow et al. NATURE
- The Cellular and Molecular Basis for Planarian Regeneration
- (2018) Peter W. Reddien CELL
- Tissue Regeneration Enhancer Elements: A Way to Unlock Endogenous Healing Power
- (2018) KaHoua Yang et al. DEVELOPMENTAL DYNAMICS
- Damage-responsive elements in Drosophila regeneration
- (2018) Elena Vizcaya-Molina et al. GENOME RESEARCH
- Chromatin regulatory mechanisms and therapeutic opportunities in cancer
- (2018) Alfredo M. Valencia et al. NATURE CELL BIOLOGY
- Stimulation of functional neuronal regeneration from Müller glia in adult mice
- (2017) Nikolas L. Jorstad et al. NATURE
- Inflammatory memory sensitizes skin epithelial stem cells to tissue damage
- (2017) Shruti Naik et al. NATURE
- Mechanisms of action and regulation of ATP-dependent chromatin-remodelling complexes
- (2017) Cedric R. Clapier et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Histone Marks in the ‘Driver’s Seat’: Functional Roles in Steering the Transcription Cycle
- (2017) Leah A. Gates et al. TRENDS IN BIOCHEMICAL SCIENCES
- Changes in gene methylation patterns in neonatal murine hearts: Implications for the regenerative potential
- (2016) Bartosz Górnikiewicz et al. BMC GENOMICS
- The 3D Genome as Moderator of Chromosomal Communication
- (2016) Job Dekker et al. CELL
- Root Regeneration Triggers an Embryo-like Sequence Guided by Hormonal Interactions
- (2016) Idan Efroni et al. CELL
- Chromosome conformation capture technologies and their impact in understanding genome function
- (2016) Satish Sati et al. CHROMOSOMA
- Histone Deacetylase (HDAC) Inhibitors - emerging roles in neuronal memory, learning, synaptic plasticity and neural regeneration
- (2016) Shabir Ahmad Ganai et al. Current Neuropharmacology
- Modulation of tissue repair by regeneration enhancer elements
- (2016) Junsu Kang et al. NATURE
- Tempo and mode of genome evolution in a 50,000-generation experiment
- (2016) Olivier Tenaillon et al. NATURE
- Transition states and cell fate decisions in epigenetic landscapes
- (2016) Naomi Moris et al. NATURE REVIEWS GENETICS
- Regulation of disease-associated gene expression in the 3D genome
- (2016) Peter Hugo Lodewijk Krijger et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Adult cell plasticity in vivo: de-differentiation and transdifferentiation are back in style
- (2016) Allyson J. Merrell et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Activation of proto-oncogenes by disruption of chromosome neighborhoods
- (2016) D. Hnisz et al. SCIENCE
- H3K9me3-Dependent Heterochromatin: Barrier to Cell Fate Changes
- (2016) Justin S. Becker et al. TRENDS IN GENETICS
- Chromatin-remodelling factor Brg1 regulates myocardial proliferation and regeneration in zebrafish
- (2016) Chenglu Xiao et al. Nature Communications
- Persistent Alterations in Microglial Enhancers in a Model of Chronic Pain
- (2016) Franziska Denk et al. Cell Reports
- Localized epigenetic silencing of a damage-activated WNT enhancer limits regeneration in mature Drosophila imaginal discs
- (2016) Robin E Harris et al. eLife
- Chromatin remodelers: We are the drivers!!
- (2016) Monica Tyagi et al. Nucleus
- Chromatin remodelers: We are the drivers!!
- (2016) Monica Tyagi et al. Nucleus
- Transcriptional and Chromatin Dynamics of Muscle Regeneration after Severe Trauma
- (2016) Carlos A. Aguilar et al. Stem Cell Reports
- miRNA Control of Tissue Repair and Regeneration
- (2015) Chandan K. Sen et al. AMERICAN JOURNAL OF PATHOLOGY
- Cardiomyocyte proliferation in cardiac development and regeneration: a guide to methodologies and interpretations
- (2015) Marina Leone et al. AMERICAN JOURNAL OF PHYSIOLOGY-HEART AND CIRCULATORY PHYSIOLOGY
- A distinct regulatory region of the Bmp5 locus activates gene expression following adult bone fracture or soft tissue injury
- (2015) Catherine A. Guenther et al. BONE
- Chromatin modifiers and histone modifications in bone formation, regeneration, and therapeutic intervention for bone-related disease
- (2015) Jonathan A.R. Gordon et al. BONE
- No Evidence for Cardiomyocyte Number Expansion in Preadolescent Mice
- (2015) Kanar Alkass et al. CELL
- CTCF-Mediated Human 3D Genome Architecture Reveals Chromatin Topology for Transcription
- (2015) Zhonghui Tang et al. CELL
- Disruptions of Topological Chromatin Domains Cause Pathogenic Rewiring of Gene-Enhancer Interactions
- (2015) Darío G. Lupiáñez et al. CELL
- Insights into Sex Chromosome Evolution and Aging from the Genome of a Short-Lived Fish
- (2015) Kathrin Reichwald et al. CELL
- The African Turquoise Killifish Genome Provides Insights into Evolution and Genetic Architecture of Lifespan
- (2015) Dario Riccardo Valenzano et al. CELL
- Dynamic Regulation of Schwann Cell Enhancers after Peripheral Nerve Injury
- (2015) Holly A. Hung et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Pioneer factors govern super-enhancer dynamics in stem cell plasticity and lineage choice
- (2015) Rene C. Adam et al. NATURE
- Chromatin architecture reorganization during stem cell differentiation
- (2015) Jesse R. Dixon et al. NATURE
- Polycomb repressive complex PRC1 spatially constrains the mouse embryonic stem cell genome
- (2015) Stefan Schoenfelder et al. NATURE GENETICS
- Nrg1 is an injury-induced cardiomyocyte mitogen for the endogenous heart regeneration program in zebrafish
- (2015) Matthew Gemberling et al. eLife
- Reduced matrix rigidity promotes neonatal cardiomyocyte dedifferentiation, proliferation and clonal expansion
- (2015) Yfat Yahalom-Ronen et al. eLife
- Heterochromatin, histone modifications, and nuclear architecture in disease vectors
- (2015) Igor V Sharakhov et al. Current Opinion in Insect Science
- Interpreting the language of histone and DNA modifications
- (2014) Scott B. Rothbart et al. Biochimica et Biophysica Acta-Gene Regulatory Mechanisms
- Histones pass the message on
- (2014) Bryony Jones NATURE REVIEWS GENETICS
- Strategies for myelin regeneration: lessons learned from development
- (2014) Yi Pang et al. Neural Regeneration Research
- PCAF-dependent epigenetic changes promote axonal regeneration in the central nervous system
- (2014) Radhika Puttagunta et al. Nature Communications
- Architectural Protein Subclasses Shape 3D Organization of Genomes during Lineage Commitment
- (2013) Jennifer E. Phillips-Cremins et al. CELL
- Chromatin modifiers and remodellers: regulators of cellular differentiation
- (2013) Taiping Chen et al. NATURE REVIEWS GENETICS
- Cohesin and CTCF differentially affect chromatin architecture and gene expression in human cells
- (2013) J. Zuin et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A Switch Between Topological Domains Underlies HoxD Genes Collinearity in Mouse Limbs
- (2013) G. Andrey et al. SCIENCE
- Hypertrophy and Unconventional Cell Division of Hepatocytes Underlie Liver Regeneration
- (2012) Yuichiro Miyaoka et al. CURRENT BIOLOGY
- Egr-1: new conductor for the tissue repair orchestra directs harmony (regeneration) or cacophony (fibrosis)
- (2012) Swati Bhattacharyya et al. JOURNAL OF PATHOLOGY
- Topological domains in mammalian genomes identified by analysis of chromatin interactions
- (2012) Jesse R. Dixon et al. NATURE
- The Role of Apoptosis-Induced Proliferation for Regeneration and Cancer
- (2012) H. D. Ryoo et al. Cold Spring Harbor Perspectives in Biology
- Role of Transcription Factors in Peripheral Nerve Regeneration
- (2012) Smriti Patodia et al. Frontiers in Molecular Neuroscience
- Cohesin: a critical chromatin organizer in mammalian gene regulation
- (2011) Richard Chien et al. Biochemistry and Cell Biology
- The histone acetyltransferase p300 promotes intrinsic axonal regeneration
- (2011) Perrine Gaub et al. BRAIN
- Nuclear organization: taking a position on gene expression
- (2011) Pamela K Geyer et al. CURRENT OPINION IN CELL BIOLOGY
- The Cellular Basis for Animal Regeneration
- (2011) Elly M. Tanaka et al. DEVELOPMENTAL CELL
- ATP-Dependent Chromatin Remodeling Factors and Their Roles in Affecting Nucleosome Fiber Composition
- (2011) Paolo Piatti et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Early growth response transcription factors: Key mediators of fibrosis and novel targets for anti-fibrotic therapy
- (2011) Swati Bhattacharyya et al. MATRIX BIOLOGY
- Cis-regulatory elements: molecular mechanisms and evolutionary processes underlying divergence
- (2011) Patricia J. Wittkopp et al. NATURE REVIEWS GENETICS
- Phosphorylation of Junb family proteins by the Jun N-terminal kinase supports tissue regeneration in zebrafish
- (2010) Takashi Ishida et al. DEVELOPMENTAL BIOLOGY
- Evolutionary Loss of Animal Regeneration: Pattern and Process
- (2010) A. E. Bely INTEGRATIVE AND COMPARATIVE BIOLOGY
- Evidence for the Local Evolution of Mechanisms Underlying Limb Regeneration in Salamanders
- (2010) A. Acely Garza-Garcia et al. INTEGRATIVE AND COMPARATIVE BIOLOGY
- The dynamic genome of Hydra
- (2010) Jarrod A. Chapman et al. NATURE
- Zebrafish heart regeneration occurs by cardiomyocyte dedifferentiation and proliferation
- (2010) Chris Jopling et al. NATURE
- Advances in understanding tissue regenerative capacity and mechanisms in animals
- (2010) Kenneth D. Poss NATURE REVIEWS GENETICS
- Chromatin Higher-order Structure and Dynamics
- (2010) C. L. Woodcock et al. Cold Spring Harbor Perspectives in Biology
- The Biology of Chromatin Remodeling Complexes
- (2009) Cedric R. Clapier et al. Annual Review of Biochemistry
- Spatio-Temporal Plasticity in Chromatin Organization in Mouse Cell Differentiation and during Drosophila Embryogenesis
- (2009) Dipanjan Bhattacharya et al. BIOPHYSICAL JOURNAL
- Neuregulin1/ErbB4 Signaling Induces Cardiomyocyte Proliferation and Repair of Heart Injury
- (2009) Kevin Bersell et al. CELL
- Gene expression profiles of lens regeneration and development inXenopus laevis
- (2009) Erica L. Malloch et al. DEVELOPMENTAL DYNAMICS
- The evolutionary significance of ancient genome duplications
- (2009) Yves Van de Peer et al. NATURE REVIEWS GENETICS
- Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
- (2009) E. Lieberman-Aiden et al. SCIENCE
- Slicing across Kingdoms: Regeneration in Plants and Animals
- (2008) Kenneth D. Birnbaum et al. CELL
- Chromosomal Dynamics at the Shh Locus: Limb Bud-Specific Differential Regulation of Competence and Active Transcription
- (2008) Takanori Amano et al. DEVELOPMENTAL CELL
Create your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create NowBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started