Adrenergic receptor signaling induced by Klf15, a regulator of regeneration enhancer, promotes kidney reconstruction

Krüppel-like factor 1 is a core cardiomyogenic trigger in zebrafish

(2021) Masahito Ogawa et al.   SCIENCE

Liquid condensation of reprogramming factor KLF4 with DNA provides a mechanism for chromatin organization

(2021) Rajesh Sharma et al.   Nature Communications

Current Developments on the Role of α1-Adrenergic Receptors in Cognition, Cardioprotection, and Metabolism

(2021) Dianne M. Perez   Frontiers in Cell and Developmental Biology

JASPAR 2022: the 9th release of the open-access database of transcription factor binding profiles

(2021) Jaime A Castro-Mondragon et al.   NUCLEIC ACIDS RESEARCH

Regeneration enhancers: A clue to reactivation of developmental genes

(2020) Nanoka Suzuki et al.   DEVELOPMENT GROWTH & DIFFERENTIATION

Effects of chronic prazosin, an alpha-1 adrenergic antagonist, on anxiety-like behavior and cortisol levels in a chronic unpredictable stress model in zebrafish (Danio rerio)

(2020) Michael P. O’Daniel et al.   PeerJ

Identification and requirements of enhancers that direct gene expression during zebrafish fin regeneration

(2020) John D. Thompson et al.   DEVELOPMENT

Comparison of differential accessibility analysis strategies for ATAC-seq data

(2020) Paul Gontarz et al.   Scientific Reports

Changes in regeneration-responsive enhancers shape regenerative capacities in vertebrates

(2020) Wei Wang et al.   SCIENCE

Arid3a regulates nephric tubule regeneration via evolutionarily conserved regeneration signal-response enhancers

(2019) Nanoka Suzuki et al.   eLife

Modeling congenital kidney diseases in Xenopus laevis

(2019) Alexandria T. M. Blackburn et al.   Disease Models & Mechanisms

Enhancer Activity Requires CBP/P300 Bromodomain-Dependent Histone H3K27 Acetylation

(2018) Ryan Raisner et al.   Cell Reports

SP and KLF Transcription Factors in Digestive Physiology and Diseases

(2017) Chang-Kyung Kim et al.   GASTROENTEROLOGY

Tissue-Specific Gene Inactivation inXenopus laevis: Knockout oflhx1in the Kidney with CRISPR/Cas9

(2017) Bridget D. DeLay et al.   GENETICS

An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues

(2017) M Ryan Corces et al.   NATURE METHODS

Tissue-Specific Gene Inactivation inXenopus laevis: Knockout oflhx1in the Kidney with CRISPR/Cas9

(2017) Bridget D. DeLay et al.   GENETICS

Using Xenopus to study genetic kidney diseases

(2016) Soeren S. Lienkamp   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Localized epigenetic silencing of a damage-activated WNT enhancer limits regeneration in mature Drosophila imaginal discs

(2016) Robin E Harris et al.   eLife

Pioneer Transcription Factors Target Partial DNA Motifs on Nucleosomes to Initiate Reprogramming

(2015) Abdenour Soufi et al.   CELL

Kruppel-like factor family genes are expressed duringXenopusembryogenesis and involved in germ layer formation and body axis patterning

(2015) Yan Gao et al.   DEVELOPMENTAL DYNAMICS

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

(2013) Y. Liao et al.   BIOINFORMATICS

Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position

(2013) Jason D Buenrostro et al.   NATURE METHODS

A far-upstream (−70 kb) enhancer mediates Sox9 auto-regulation in somatic tissues during development and adult regeneration

(2013) Timothy J. Mead et al.   NUCLEIC ACIDS RESEARCH

Regeneration of Functional Pronephric Proximal Tubules After Partial Nephrectomy inXenopus laevis

(2012) Shoshoni T. Caine et al.   DEVELOPMENTAL DYNAMICS

Evolution of a tissue-specific silencer underlies divergence in the expression of pax2 and pax8 paralogues

(2012) Haruki Ochi et al.   Nature Communications

Enhancers

(2012) Ken W.Y. Cho   Wiley Interdisciplinary Reviews-Developmental Biology

The Cellular Basis for Animal Regeneration

(2011) Elly M. Tanaka et al.   DEVELOPMENTAL CELL

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data

(2010) Lihua J Zhu et al.   BMC BIOINFORMATICS

Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities

(2010) Sven Heinz et al.   MOLECULAR CELL

Advances in understanding tissue regenerative capacity and mechanisms in animals

(2010) Kenneth D. Poss   NATURE REVIEWS GENETICS

Histone H3K27ac separates active from poised enhancers and predicts developmental state

(2010) M. P. Creyghton et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Stress-Mediated Increases in Systemic and Local Epinephrine Impair Skin Wound Healing: Potential New Indication for Beta Blockers

(2009) Raja K Sivamani et al.   PLOS MEDICINE

Intrinsic Epithelial Cells Repair the Kidney after Injury

(2008) Benjamin D. Humphreys et al.   Cell Stem Cell