Damage-responsive, maturity-silenced enhancers regulate multiple genes that direct regeneration in Drosophila

Arid3a regulates nephric tubule regeneration via evolutionarily conserved regeneration signal-response enhancers

(2019) Nanoka Suzuki et al.   eLife

Changes in chromatin accessibility ensure robust cell cycle exit in terminally differentiated cells

(2019) Yiqin Ma et al.   PLOS BIOLOGY

CtBP impedes JNK- and Upd/STAT-driven cell fate misspecifications in regenerating Drosophila imaginal discs

(2018) Melanie I Worley et al.   eLife

Damage-responsive elements in Drosophila regeneration

(2018) Elena Vizcaya-Molina et al.   GENOME RESEARCH

Hormone-dependent control of developmental timing through regulation of chromatin accessibility

(2017) Christopher M. Uyehara et al.   GENES & DEVELOPMENT

Polycomb and Trithorax Group Genes inDrosophila

(2017) Judith A. Kassis et al.   GENETICS

The Drosophila Duox maturation factor is a key component of a positive feedback loop that sustains regeneration signaling

(2017) Sumbul Jawed Khan et al.   PLoS Genetics

Polycomb and Trithorax Group Genes inDrosophila

(2017) Judith A. Kassis et al.   GENETICS

Analysis of chromatin accessibility in human epidermis identifies putative barrier dysfunction-sensing enhancers

(2017) Julie M. Lander et al.   PLoS One

Apontic directly activates hedgehog and cyclin E for proper organ growth and patterning

(2017) Xian-Feng Wang et al.   Scientific Reports

Apontic regulates somatic stem cell numbers in Drosophila testes

(2016) Amanda J. Monahan et al.   BMC DEVELOPMENTAL BIOLOGY

JAK/STAT signalling mediates cell survival in response to tissue stress

(2016) Marco La Fortezza et al.   DEVELOPMENT

Modulation of tissue repair by regeneration enhancer elements

(2016) Junsu Kang et al.   NATURE

deepTools2: a next generation web server for deep-sequencing data analysis

(2016) Fidel Ramírez et al.   NUCLEIC ACIDS RESEARCH

Drosophila Wnt and STAT Define Apoptosis-Resistant Epithelial Cells for Tissue Regeneration after Irradiation

(2016) Shilpi Verghese et al.   PLOS BIOLOGY

Localized epigenetic silencing of a damage-activated WNT enhancer limits regeneration in mature Drosophila imaginal discs

(2016) Robin E Harris et al.   eLife

Transcriptional and Chromatin Dynamics of Muscle Regeneration after Severe Trauma

(2016) Carlos A. Aguilar et al.   Stem Cell Reports

A distinct regulatory region of the Bmp5 locus activates gene expression following adult bone fracture or soft tissue injury

(2015) Catherine A. Guenther et al.   BONE

Changes in Regenerative Capacity through Lifespan

(2015) Maximina Yun   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

DuringDrosophiladisc regeneration, JAK/STAT coordinates cell proliferation with Dilp8-mediated developmental delay

(2015) Tomonori Katsuyama et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

ROS-Induced JNK and p38 Signaling Is Required for Unpaired Cytokine Activation during Drosophila Regeneration

(2015) Paula Santabárbara-Ruiz et al.   PLoS Genetics

Spontaneous hair cell regeneration in the neonatal mouse cochlea in vivo

(2014) B. C. Cox et al.   DEVELOPMENT

Tools and methods for studying Notch signaling in Drosophila melanogaster

(2014) Evanthia Zacharioudaki et al.   METHODS

Genome-scale functional characterization of Drosophila developmental enhancers in vivo

(2014) Evgeny Z. Kvon et al.   NATURE

Evolutionarily conserved transcription factor Apontic controls the G1/S progression by inducingcyclin Eduring eye development

(2014) Qing-Xin Liu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Common Set of DNA Regulatory Elements Shapes Drosophila Appendages

(2013) Daniel J. McKay et al.   DEVELOPMENTAL CELL

Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position

(2013) Jason D Buenrostro et al.   NATURE METHODS

The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote

(2013) Yang Liao et al.   NUCLEIC ACIDS RESEARCH

Software for Computing and Annotating Genomic Ranges

(2013) Michael Lawrence et al.   PLoS Computational Biology

Tissue Homeostasis in the Wing Disc of Drosophila melanogaster: Immediate Response to Massive Damage during Development

(2013) Salvador C. Herrera et al.   PLoS Genetics

Possible roles of DLK1 in the Notch pathway during development and disease

(2012) Farah A. Falix et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE

A Versatile ΦC31 Based Reporter System for Measuring AP-1 and Nrf2 Signaling in Drosophila and in Tissue Culture

(2012) Nirmalya Chatterjee et al.   PLoS One

Regulation of neonatal and adult mammalian heart regeneration by the miR-15 family

(2012) E. R. Porrello et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Secreted Peptide Dilp8 Coordinates Drosophila Tissue Growth with Developmental Timing

(2012) J. Colombani et al.   SCIENCE

A Survey of 6,300 Genomic Fragments for cis-Regulatory Activity in the Imaginal Discs of Drosophila melanogaster

(2012) Aurélie Jory et al.   Cell Reports

The Cellular Basis for Animal Regeneration

(2011) Elly M. Tanaka et al.   DEVELOPMENTAL CELL

Focusing Transgene Expression in Drosophila by Coupling Gal4 With a Novel Split-LexA Expression System

(2011) Chun-Yuan Ting et al.   GENETICS

MiMIC: a highly versatile transposon insertion resource for engineering Drosophila melanogaster genes

(2011) Koen J T Venken et al.   NATURE METHODS

DSL-Notch Signaling in the Drosophila Brain in Response to Olfactory Stimulation

(2011) Toby Lieber et al.   NEURON

Transient Regenerative Potential of the Neonatal Mouse Heart

(2011) E. R. Porrello et al.   SCIENCE

Retinoids Regulate a Developmental Checkpoint for Tissue Regeneration in Drosophila

(2010) Adrian Halme et al.   CURRENT BIOLOGY

Cell death-induced regeneration in wing imaginal discs requires JNK signalling

(2010) C. Bergantinos et al.   DEVELOPMENT

Spps, a Drosophila Sp1/KLF family member, binds to PREs and is required for PRE activity late in development

(2010) J. L. Brown et al.   DEVELOPMENT

Regeneration and transdetermination: The role of wingless and its regulation

(2010) Margrit Schubiger et al.   DEVELOPMENTAL BIOLOGY

Spatial Restriction of FGF Signaling by a Matrix Metalloprotease Controls Branching Morphogenesis

(2010) Qiong Wang et al.   DEVELOPMENTAL CELL

Refinement of Tools for Targeted Gene Expression in Drosophila

(2010) B. D. Pfeiffer et al.   GENETICS

Comprehensive analysis of the chromatin landscape in Drosophila melanogaster

(2010) Peter V. Kharchenko et al.   NATURE

FlyFactorSurvey: a database of Drosophila transcription factor binding specificities determined using the bacterial one-hybrid system

(2010) Lihua Julie Zhu et al.   NUCLEIC ACIDS RESEARCH

Refined LexA transactivators and their use in combination with the Drosophila Gal4 system

(2010) R. Yagi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Regenerative Growth in Drosophila Imaginal Discs Is Regulated by Wingless and Myc

(2009) Rachel K. Smith-Bolton et al.   DEVELOPMENTAL CELL

The atypical mammalian ligand Delta-like1 (Dlk1) can regulate Notch signalling in Drosophila

(2008) Sarah J Bray et al.   BMC DEVELOPMENTAL BIOLOGY

Feedback Inhibition of JAK/STAT Signaling by Apontic Is Required to Limit an Invasive Cell Population

(2008) Michelle Starz-Gaiano et al.   DEVELOPMENTAL CELL

A Wingless and Notch double-repression mechanism regulates G1–S transition in the Drosophila wing

(2008) Héctor Herranz et al.   EMBO JOURNAL

Tools for neuroanatomy and neurogenetics in Drosophila

(2008) B. D. Pfeiffer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

OSM-11 Facilitates LIN-12 Notch Signaling during Caenorhabditis elegans Vulval Development

(2008) Hidetoshi Komatsu et al.   PLOS BIOLOGY

Model-based Analysis of ChIP-Seq (MACS)

(2008) Yong Zhang et al.   GENOME BIOLOGY